RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 WDR6Q9NNW5 1121 aaKnown RBP23.71■■□□□ 1.39
USP40-215ENST00000484528 OSTNP61366 133 aa23.7■■□□□ 1.38
USP40-215ENST00000484528 CREMQ03060 361 aa23.7■■□□□ 1.38
USP40-215ENST00000484528 RAD51AP2Q09MP3 1159 aa23.7■■□□□ 1.38
USP40-215ENST00000484528 MAPK7Q13164 816 aa23.7■■□□□ 1.38
USP40-215ENST00000484528 PSMD5Q16401 504 aa23.7■■□□□ 1.38
USP40-215ENST00000484528 LILRA6Q6PI73 481 aa23.7■■□□□ 1.38
USP40-215ENST00000484528 GPR65Q8IYL9 337 aa23.7■■□□□ 1.38
USP40-215ENST00000484528 PLIN2Q99541 437 aa23.7■■□□□ 1.38
USP40-215ENST00000484528 CDT1Q9H211 546 aa23.7■■□□□ 1.38
USP40-215ENST00000484528 PLEKHA4Q9H4M7 779 aa23.7■■□□□ 1.38
USP40-215ENST00000484528 KCNK12Q9HB15 430 aa23.7■■□□□ 1.38
USP40-215ENST00000484528 GOLGA2P5Q9HBQ8 144 aa23.7■■□□□ 1.38
USP40-215ENST00000484528 H3BQV1 296 aa23.69■■□□□ 1.38
USP40-215ENST00000484528 DMP1Q13316 513 aaPredicted RBP23.69■■□□□ 1.38
USP40-215ENST00000484528 ZNF568Q3ZCX4 644 aa23.69■■□□□ 1.38
USP40-215ENST00000484528 RINT1Q6NUQ1 792 aa23.69■■□□□ 1.38
USP40-215ENST00000484528 TAS1R3Q7RTX0 852 aa23.69■■□□□ 1.38
USP40-215ENST00000484528 HDAC7Q8WUI4 952 aa23.69■■□□□ 1.38
USP40-215ENST00000484528 PIK3R5Q8WYR1 880 aa23.69■■□□□ 1.38
USP40-215ENST00000484528 MYADMQ96S97 322 aa23.69■■□□□ 1.38
USP40-215ENST00000484528 PRRX2Q99811 253 aa23.69■■□□□ 1.38
USP40-215ENST00000484528 NT5C3AQ9H0P0 336 aa23.69■■□□□ 1.38
USP40-215ENST00000484528 KMT5AQ9NQR1 393 aa23.69■■□□□ 1.38
USP40-215ENST00000484528 FAM86C1Q9NVL1 165 aa23.69■■□□□ 1.38
USP40-215ENST00000484528 TNFSF13BQ9Y275 285 aa23.69■■□□□ 1.38
USP40-215ENST00000484528 PDCD11Q14690 1871 aaKnown RBP23.68■■□□□ 1.38
USP40-215ENST00000484528 SFI1A8K8P3 1242 aa23.68■■□□□ 1.38
USP40-215ENST00000484528 SLC16A4O15374 487 aa23.68■■□□□ 1.38
USP40-215ENST00000484528 ADAM12O43184 909 aa23.68■■□□□ 1.38
USP40-215ENST00000484528 ATP2C1P98194 919 aaPredicted RBP23.68■■□□□ 1.38
USP40-215ENST00000484528 TDGQ13569 410 aa23.68■■□□□ 1.38
USP40-215ENST00000484528 RILPL1Q5EBL4 403 aa23.68■■□□□ 1.38
USP40-215ENST00000484528 C1orf186Q6ZWK4 172 aa23.68■■□□□ 1.38
USP40-215ENST00000484528 TMEM105Q8N8V8 129 aa23.68■■□□□ 1.38
USP40-215ENST00000484528 LNX1Q8TBB1 728 aaPredicted RBP23.68■■□□□ 1.38
USP40-215ENST00000484528 RSAD2Q8WXG1 361 aa23.68■■□□□ 1.38
USP40-215ENST00000484528 STAMQ92783 540 aa23.68■■□□□ 1.38
USP40-215ENST00000484528 DRC1Q96MC2 740 aa23.68■■□□□ 1.38
USP40-215ENST00000484528 PNMA5Q96PV4 448 aa23.68■■□□□ 1.38
USP40-215ENST00000484528 PPP1R10Q96QC0 940 aaKnown RBP23.68■■□□□ 1.38
USP40-215ENST00000484528 ACO2Q99798 780 aaKnown RBP23.68■■□□□ 1.38
USP40-215ENST00000484528 CLSTN3Q9BQT9 956 aa23.68■■□□□ 1.38
USP40-215ENST00000484528 TARS2Q9BW92 718 aaKnown RBP23.68■■□□□ 1.38
USP40-215ENST00000484528 MFSD1Q9H3U5 465 aa23.68■■□□□ 1.38
USP40-215ENST00000484528 ARHGAP28Q9P2N2 729 aa23.68■■□□□ 1.38
USP40-215ENST00000484528 VWA3AA6NCI4 1184 aa23.67■■□□□ 1.38
USP40-215ENST00000484528 HARSP12081 509 aaKnown RBP23.67■■□□□ 1.38
USP40-215ENST00000484528 CLCNKBP51801 687 aa23.67■■□□□ 1.38
USP40-215ENST00000484528 CYP26C1Q6V0L0 522 aa23.67■■□□□ 1.38
USP40-215ENST00000484528 GET4Q7L5D6 327 aaPredicted RBP23.67■■□□□ 1.38
USP40-215ENST00000484528 APBB1IPQ7Z5R6 666 aaPredicted RBP23.67■■□□□ 1.38
USP40-215ENST00000484528 MRPL4Q9BYD3 311 aaKnown RBP23.67■■□□□ 1.38
USP40-215ENST00000484528 RHOBTB2Q9BYZ6 727 aa23.67■■□□□ 1.38
USP40-215ENST00000484528 PRKD2Q9BZL6 878 aa23.67■■□□□ 1.38
USP40-215ENST00000484528 ZDHHC7Q9NXF8 308 aa23.67■■□□□ 1.38
USP40-215ENST00000484528 FBXW11Q9UKB1 542 aa23.67■■□□□ 1.38
USP40-215ENST00000484528 I3L4J1 428 aa23.66■■□□□ 1.38
USP40-215ENST00000484528 NARSO43776 548 aaKnown RBP23.66■■□□□ 1.38
USP40-215ENST00000484528 ZMYND10O75800 440 aa23.66■■□□□ 1.38
USP40-215ENST00000484528 ELAVL2Q12926 359 aaKnown RBP23.66■■□□□ 1.38
USP40-215ENST00000484528 C3orf58Q8NDZ4 430 aa23.66■■□□□ 1.38
USP40-215ENST00000484528 ST13P5Q8NFI4 369 aaPredicted RBP23.66■■□□□ 1.38
USP40-215ENST00000484528 CCDC94Q9BW85 323 aaPredicted RBP23.66■■□□□ 1.38
USP40-215ENST00000484528 TMEM134Q9H6X4 195 aa23.66■■□□□ 1.38
USP40-215ENST00000484528 UPF2Q9HAU5 1272 aaKnown RBP23.66■■□□□ 1.38
USP40-215ENST00000484528 DUSP12Q9UNI6 340 aa23.66■■□□□ 1.38
USP40-215ENST00000484528 B3GAT3O94766 335 aa23.65■■□□□ 1.38
USP40-215ENST00000484528 C1RP00736 705 aa23.65■■□□□ 1.38
USP40-215ENST00000484528 GRM5P41594 1212 aa23.65■■□□□ 1.38
USP40-215ENST00000484528 YARSP54577 528 aaKnown RBP23.65■■□□□ 1.38
USP40-215ENST00000484528 SOX4Q06945 474 aaPredicted RBP23.65■■□□□ 1.38
USP40-215ENST00000484528 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.65■■□□□ 1.38
USP40-215ENST00000484528 FLCNQ8NFG4 579 aa23.65■■□□□ 1.38
USP40-215ENST00000484528 TCHPQ9BT92 498 aa23.65■■□□□ 1.38
USP40-215ENST00000484528 PTPRHQ9HD43 1115 aa23.65■■□□□ 1.38
USP40-215ENST00000484528 IGSF9Q9P2J2 1179 aa23.65■■□□□ 1.38
USP40-215ENST00000484528 FBXL21Q9UKT6 434 aa23.65■■□□□ 1.38
USP40-215ENST00000484528 SMIM28A0A1B0GU29 152 aa23.64■■□□□ 1.37
USP40-215ENST00000484528 H0Y858 1186 aa23.64■■□□□ 1.37
USP40-215ENST00000484528 C8AP07357 584 aa23.64■■□□□ 1.37
USP40-215ENST00000484528 BRCC3P46736 316 aa23.64■■□□□ 1.37
USP40-215ENST00000484528 CACNB1Q02641 598 aaPredicted RBP23.64■■□□□ 1.37
USP40-215ENST00000484528 LIN9Q5TKA1 542 aa23.64■■□□□ 1.37
USP40-215ENST00000484528 CD300LGQ6UXG3 332 aa23.64■■□□□ 1.37
USP40-215ENST00000484528 CDK5RAP3Q96JB5 506 aa23.64■■□□□ 1.37
USP40-215ENST00000484528 ZBTB45Q96K62 511 aaPredicted RBP23.64■■□□□ 1.37
USP40-215ENST00000484528 TOPORSQ9NS56 1045 aaPredicted RBP23.64■■□□□ 1.37
USP40-215ENST00000484528 SMC3Q9UQE7 1217 aa23.64■■□□□ 1.37
USP40-215ENST00000484528 MYH15Q9Y2K3 1946 aa23.64■■□□□ 1.37
USP40-215ENST00000484528 ZFHX2Q9C0A1 2572 aaPredicted RBP23.64■■□□□ 1.37
USP40-215ENST00000484528 NPHP3-ACAD11A0A0J9YXS1 232 aa23.63■■□□□ 1.37
USP40-215ENST00000484528 TMEM189-UBE2V1I3L0A0 370 aa23.63■■□□□ 1.37
USP40-215ENST00000484528 PAPLNO95428 1278 aa23.63■■□□□ 1.37
USP40-215ENST00000484528 FGFR3P22607 806 aa23.63■■□□□ 1.37
USP40-215ENST00000484528 GUCY2CP25092 1073 aa23.63■■□□□ 1.37
USP40-215ENST00000484528 TKTP29401 623 aaKnown RBP23.63■■□□□ 1.37
USP40-215ENST00000484528 OR1D2P34982 312 aa23.63■■□□□ 1.37
USP40-215ENST00000484528 NTHL1P78549 312 aa23.63■■□□□ 1.37
USP40-215ENST00000484528 UPP1Q16831 310 aa23.63■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms