RNA–Protein interactions for RNA: ENST00000483506.1

HDAC6-225, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-225ENST00000483506 TMC7Q7Z402 723 aa19.68■□□□□ 0.74
HDAC6-225ENST00000483506 CCDC65Q8IXS2 484 aa19.68■□□□□ 0.74
HDAC6-225ENST00000483506 MRPL43Q8N983 215 aaKnown RBP19.68■□□□□ 0.74
HDAC6-225ENST00000483506 STAMQ92783 540 aa19.68■□□□□ 0.74
HDAC6-225ENST00000483506 CNTN3Q9P232 1028 aa19.68■□□□□ 0.74
HDAC6-225ENST00000483506 USP25Q9UHP3 1055 aa19.68■□□□□ 0.74
HDAC6-225ENST00000483506 PRG3Q9Y2Y8 225 aaPredicted RBP19.68■□□□□ 0.74
HDAC6-225ENST00000483506 STYXL1Q9Y6J8 313 aa19.68■□□□□ 0.74
HDAC6-225ENST00000483506 SMIM28A0A1B0GU29 152 aa19.67■□□□□ 0.74
HDAC6-225ENST00000483506 HIDE1A8MVS5 230 aa19.67■□□□□ 0.74
HDAC6-225ENST00000483506 ACTN4O43707 911 aaKnown RBP19.67■□□□□ 0.74
HDAC6-225ENST00000483506 SLFN14P0C7P3 912 aa19.67■□□□□ 0.74
HDAC6-225ENST00000483506 NRIP1P48552 1158 aa19.67■□□□□ 0.74
HDAC6-225ENST00000483506 KCNC3Q14003 757 aa19.67■□□□□ 0.74
HDAC6-225ENST00000483506 BMS1Q14692 1282 aaKnown RBP19.67■□□□□ 0.74
HDAC6-225ENST00000483506 KYAT1Q16773 422 aa19.67■□□□□ 0.74
HDAC6-225ENST00000483506 L1TD1Q5T7N2 865 aaKnown RBP19.67■□□□□ 0.74
HDAC6-225ENST00000483506 HERC2P3Q9BVR0 1158 aa19.67■□□□□ 0.74
HDAC6-225ENST00000483506 COLEC11Q9BWP8 271 aa19.67■□□□□ 0.74
HDAC6-225ENST00000483506 TLE6Q9H808 572 aa19.67■□□□□ 0.74
HDAC6-225ENST00000483506 TTC28Q96AY4 2481 aa19.67■□□□□ 0.74
HDAC6-225ENST00000483506 A0A1B0GVL5 298 aa19.66■□□□□ 0.74
HDAC6-225ENST00000483506 OGTO15294 1046 aa19.66■□□□□ 0.74
HDAC6-225ENST00000483506 SOD2P04179 222 aa19.66■□□□□ 0.74
HDAC6-225ENST00000483506 CLTAP09496 248 aa19.66■□□□□ 0.74
HDAC6-225ENST00000483506 HARSP12081 509 aaKnown RBP19.66■□□□□ 0.74
HDAC6-225ENST00000483506 CASP5P51878 434 aa19.66■□□□□ 0.74
HDAC6-225ENST00000483506 OSTNP61366 133 aa19.66■□□□□ 0.74
HDAC6-225ENST00000483506 EHHADHQ08426 723 aa19.66■□□□□ 0.74
HDAC6-225ENST00000483506 HSP90AA2PQ14568 343 aaPredicted RBP19.66■□□□□ 0.74
HDAC6-225ENST00000483506 SLC10A6Q3KNW5 377 aa19.66■□□□□ 0.74
HDAC6-225ENST00000483506 SLFN12LQ6IEE8 588 aa19.66■□□□□ 0.74
HDAC6-225ENST00000483506 TMEM184AQ6ZMB5 413 aa19.66■□□□□ 0.74
HDAC6-225ENST00000483506 GPR65Q8IYL9 337 aa19.66■□□□□ 0.74
HDAC6-225ENST00000483506 FGFBP2Q9BYJ0 223 aa19.66■□□□□ 0.74
HDAC6-225ENST00000483506 PLEKHA5Q9HAU0 1116 aa19.66■□□□□ 0.74
HDAC6-225ENST00000483506 SLC38A7Q9NVC3 462 aa19.66■□□□□ 0.74
HDAC6-225ENST00000483506 CLDND1Q9NY35 253 aa19.66■□□□□ 0.74
HDAC6-225ENST00000483506 ADAM28Q9UKQ2 775 aa19.66■□□□□ 0.74
HDAC6-225ENST00000483506 CIZ1Q9ULV3 898 aaPredicted RBP19.66■□□□□ 0.74
HDAC6-225ENST00000483506 PCDHB13Q9Y5F0 798 aa19.66■□□□□ 0.74
HDAC6-225ENST00000483506 CUL9Q8IWT3 2517 aa19.65■□□□□ 0.74
HDAC6-225ENST00000483506 F8W810 466 aa19.65■□□□□ 0.74
HDAC6-225ENST00000483506 TMEM189-UBE2V1I3L0A0 370 aa19.65■□□□□ 0.74
HDAC6-225ENST00000483506 LINC01565O15544 149 aa19.65■□□□□ 0.74
HDAC6-225ENST00000483506 LILRB3O75022 631 aa19.65■□□□□ 0.74
HDAC6-225ENST00000483506 TBX10O75333 385 aa19.65■□□□□ 0.74
HDAC6-225ENST00000483506 GCNT3O95395 438 aa19.65■□□□□ 0.74
HDAC6-225ENST00000483506 GLP2RO95838 553 aa19.65■□□□□ 0.74
HDAC6-225ENST00000483506 ADRB2P07550 413 aa19.65■□□□□ 0.74
HDAC6-225ENST00000483506 BMP1P13497 986 aa19.65■□□□□ 0.74
HDAC6-225ENST00000483506 KCNA5P22460 613 aa19.65■□□□□ 0.74
HDAC6-225ENST00000483506 ASIC1P78348 528 aa19.65■□□□□ 0.74
HDAC6-225ENST00000483506 PTPN14Q15678 1187 aa19.65■□□□□ 0.74
HDAC6-225ENST00000483506 GLRA4Q5JXX5 417 aa19.65■□□□□ 0.74
HDAC6-225ENST00000483506 UNC13DQ70J99 1090 aa19.65■□□□□ 0.74
HDAC6-225ENST00000483506 RBM23Q86U06 439 aaKnown RBP19.65■□□□□ 0.74
HDAC6-225ENST00000483506 CEP57L1Q8IYX8 460 aa19.65■□□□□ 0.74
HDAC6-225ENST00000483506 UROC1Q96N76 676 aa19.65■□□□□ 0.74
HDAC6-225ENST00000483506 ZMAT2Q96NC0 199 aaKnown RBP19.65■□□□□ 0.74
HDAC6-225ENST00000483506 ACCSQ96QU6 501 aa19.65■□□□□ 0.74
HDAC6-225ENST00000483506 PAAF1Q9BRP4 392 aa19.65■□□□□ 0.74
HDAC6-225ENST00000483506 IGFLR1Q9H665 355 aa19.65■□□□□ 0.74
HDAC6-225ENST00000483506 TBC1D7Q9P0N9 293 aa19.65■□□□□ 0.74
HDAC6-225ENST00000483506 EXOC7Q9UPT5 735 aa19.65■□□□□ 0.74
HDAC6-225ENST00000483506 PVALEFA0A1B0GWK0 134 aa19.64■□□□□ 0.73
HDAC6-225ENST00000483506 TTC26A0AVF1 554 aa19.64■□□□□ 0.73
HDAC6-225ENST00000483506 CASTOR2A6NHX0 329 aa19.64■□□□□ 0.73
HDAC6-225ENST00000483506 ANKRD63C9JTQ0 380 aa19.64■□□□□ 0.73
HDAC6-225ENST00000483506 PER2O15055 1255 aa19.64■□□□□ 0.73
HDAC6-225ENST00000483506 CXCL14O95715 111 aa19.64■□□□□ 0.73
HDAC6-225ENST00000483506 MYBP10242 640 aa19.64■□□□□ 0.73
HDAC6-225ENST00000483506 MATR3P43243 847 aaKnown RBP eCLIP19.64■□□□□ 0.73
HDAC6-225ENST00000483506 POU5F1Q01860 360 aaKnown RBP19.64■□□□□ 0.73
HDAC6-225ENST00000483506 KCNA1Q09470 495 aa19.64■□□□□ 0.73
HDAC6-225ENST00000483506 FUT10Q6P4F1 479 aa19.64■□□□□ 0.73
HDAC6-225ENST00000483506 VN1R2Q8NFZ6 395 aa19.64■□□□□ 0.73
HDAC6-225ENST00000483506 MSLNLQ96KJ4 702 aa19.64■□□□□ 0.73
HDAC6-225ENST00000483506 TSPAN18Q96SJ8 248 aa19.64■□□□□ 0.73
HDAC6-225ENST00000483506 MSTO1Q9BUK6 570 aa19.64■□□□□ 0.73
HDAC6-225ENST00000483506 CHST7Q9NS84 486 aa19.64■□□□□ 0.73
HDAC6-225ENST00000483506 SERTAD1Q9UHV2 236 aa19.64■□□□□ 0.73
HDAC6-225ENST00000483506 GTF3C5Q9Y5Q8 519 aaPredicted RBP19.64■□□□□ 0.73
HDAC6-225ENST00000483506 NCOR1O75376 2440 aa19.63■□□□□ 0.73
HDAC6-225ENST00000483506 SF3B1O75533 1304 aaKnown RBP eCLIP19.63■□□□□ 0.731e-8■■■■■ 103.4
HDAC6-225ENST00000483506 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP19.63■□□□□ 0.73
HDAC6-225ENST00000483506 EIF3DO15371 548 aaKnown RBP eCLIP19.63■□□□□ 0.73
HDAC6-225ENST00000483506 KIF4AO95239 1232 aa19.63■□□□□ 0.73
HDAC6-225ENST00000483506 MYL1P05976 194 aa19.63■□□□□ 0.73
HDAC6-225ENST00000483506 CXCL8P10145 99 aa19.63■□□□□ 0.73
HDAC6-225ENST00000483506 ADSSP30520 456 aa19.63■□□□□ 0.73
HDAC6-225ENST00000483506 TNFSF9P41273 254 aa19.63■□□□□ 0.73
HDAC6-225ENST00000483506 KCNQ1P51787 676 aa19.63■□□□□ 0.73
HDAC6-225ENST00000483506 NDUFA8P51970 172 aa19.63■□□□□ 0.73
HDAC6-225ENST00000483506 DSG1Q02413 1049 aa19.63■□□□□ 0.73
HDAC6-225ENST00000483506 SOX4Q06945 474 aaPredicted RBP19.63■□□□□ 0.73
HDAC6-225ENST00000483506 DLX2Q07687 328 aaPredicted RBP19.63■□□□□ 0.73
HDAC6-225ENST00000483506 UPP1Q16831 310 aa19.63■□□□□ 0.73
HDAC6-225ENST00000483506 PUS10Q3MIT2 529 aaKnown RBP19.63■□□□□ 0.73
HDAC6-225ENST00000483506 SEZ6Q53EL9 994 aa19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms