RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 RNF169Q8NCN4 708 aa8.98□□□□□ -0.97
USP54-212ENST00000480210 CLP1Q92989 425 aaKnown RBP8.98□□□□□ -0.97
USP54-212ENST00000480210 P2RX5Q93086 422 aa8.98□□□□□ -0.97
USP54-212ENST00000480210 DDX27Q96GQ7 796 aaKnown RBP8.98□□□□□ -0.97
USP54-212ENST00000480210 CEP63Q96MT8 703 aa8.98□□□□□ -0.97
USP54-212ENST00000480210 UROC1Q96N76 676 aa8.98□□□□□ -0.97
USP54-212ENST00000480210 FGFBP2Q9BYJ0 223 aa8.98□□□□□ -0.97
USP54-212ENST00000480210 NXF3Q9H4D5 531 aaKnown RBP8.98□□□□□ -0.97
USP54-212ENST00000480210 GRPEL1Q9HAV7 217 aa8.98□□□□□ -0.97
USP54-212ENST00000480210 HSPBP1Q9NZL4 362 aa8.98□□□□□ -0.97
USP54-212ENST00000480210 CNTN3Q9P232 1028 aa8.98□□□□□ -0.97
USP54-212ENST00000480210 TTC26A0AVF1 554 aa8.97□□□□□ -0.97
USP54-212ENST00000480210 ARL5CA6NH57 179 aa8.97□□□□□ -0.97
USP54-212ENST00000480210 PPP1R3GB7ZBB8 358 aa8.97□□□□□ -0.97
USP54-212ENST00000480210 FAM189A1O60320 539 aa8.97□□□□□ -0.97
USP54-212ENST00000480210 EXOC3O60645 756 aa8.97□□□□□ -0.97
USP54-212ENST00000480210 RECQL4O94761 1208 aa8.97□□□□□ -0.97
USP54-212ENST00000480210 GNA14O95837 355 aa8.97□□□□□ -0.97
USP54-212ENST00000480210 NR3C1P04150 777 aa8.97□□□□□ -0.97
USP54-212ENST00000480210 CCDC192P0DO97 292 aa8.97□□□□□ -0.97
USP54-212ENST00000480210 RPL9P32969 192 aaKnown RBP8.97□□□□□ -0.97
USP54-212ENST00000480210 PPM1AP35813 382 aa8.97□□□□□ -0.97
USP54-212ENST00000480210 PSMC2P35998 433 aaKnown RBP8.97□□□□□ -0.97
USP54-212ENST00000480210 MCCD1P59942 119 aaPredicted RBP8.97□□□□□ -0.97
USP54-212ENST00000480210 RNASELQ05823 741 aaKnown RBP8.97□□□□□ -0.97
USP54-212ENST00000480210 PAK1Q13153 545 aa8.97□□□□□ -0.97
USP54-212ENST00000480210 BMS1Q14692 1282 aaKnown RBP8.97□□□□□ -0.97
USP54-212ENST00000480210 SLC10A6Q3KNW5 377 aa8.97□□□□□ -0.97
USP54-212ENST00000480210 CLLU1OSQ5K130 101 aa8.97□□□□□ -0.97
USP54-212ENST00000480210 FAM109BQ6ICB4 259 aaPredicted RBP8.97□□□□□ -0.97
USP54-212ENST00000480210 CAVIN1Q6NZI2 390 aaKnown RBP8.97□□□□□ -0.97
USP54-212ENST00000480210 FILIP1Q7Z7B0 1213 aa8.97□□□□□ -0.97
USP54-212ENST00000480210 BRSK2Q8IWQ3 736 aa8.97□□□□□ -0.97
USP54-212ENST00000480210 GLIS3Q8NEA6 775 aa8.97□□□□□ -0.97
USP54-212ENST00000480210 HELQQ8TDG4 1101 aa8.97□□□□□ -0.97
USP54-212ENST00000480210 NOC3LQ8WTT2 800 aaKnown RBP8.97□□□□□ -0.97
USP54-212ENST00000480210 ERCC4Q92889 916 aaPredicted RBP8.97□□□□□ -0.97
USP54-212ENST00000480210 TGS1Q96RS0 853 aaKnown RBP8.97□□□□□ -0.97
USP54-212ENST00000480210 GAD1Q99259 594 aa8.97□□□□□ -0.97
USP54-212ENST00000480210 CBWD1Q9BRT8 395 aa8.97□□□□□ -0.97
USP54-212ENST00000480210 APOL6Q9BWW8 343 aa8.97□□□□□ -0.97
USP54-212ENST00000480210 PBX4Q9BYU1 374 aa8.97□□□□□ -0.97
USP54-212ENST00000480210 NAT10Q9H0A0 1025 aaKnown RBP8.97□□□□□ -0.97
USP54-212ENST00000480210 SLC28A3Q9HAS3 691 aa8.97□□□□□ -0.97
USP54-212ENST00000480210 METTL14Q9HCE5 456 aaKnown RBP8.97□□□□□ -0.97
USP54-212ENST00000480210 RNF19AQ9NV58 838 aa8.97□□□□□ -0.97
USP54-212ENST00000480210 TMEM63CQ9P1W3 806 aa8.97□□□□□ -0.97
USP54-212ENST00000480210 RWDD2AQ9UIY3 292 aa8.97□□□□□ -0.97
USP54-212ENST00000480210 UBQLN1Q9UMX0 589 aaKnown RBP8.97□□□□□ -0.97
USP54-212ENST00000480210 C2CD2Q9Y426 696 aa8.97□□□□□ -0.97
USP54-212ENST00000480210 PCDHB12Q9Y5F1 795 aa8.97□□□□□ -0.97
USP54-212ENST00000480210 KIAA1671Q9BY89 1806 aa8.96□□□□□ -0.97
USP54-212ENST00000480210 SMIM28A0A1B0GU29 152 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 ARHGEF37A1IGU5 675 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 C5orf67F2Z3F1 127 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 BIN1O00499 593 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 IKBKBO14920 756 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 CLIC2O15247 247 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 SLC16A3O15427 465 aaKnown RBP8.96□□□□□ -0.98
USP54-212ENST00000480210 STX10O60499 249 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 EPB41P11171 864 aaKnown RBP8.96□□□□□ -0.98
USP54-212ENST00000480210 FGFR1P11362 822 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 HARSP12081 509 aaKnown RBP8.96□□□□□ -0.98
USP54-212ENST00000480210 KRT13P13646 458 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 BMP6P22004 513 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 NR2F2P24468 414 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 AKAP5P24588 427 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 ALDH7A1P49419 539 aaKnown RBP8.96□□□□□ -0.98
USP54-212ENST00000480210 ERVK-21P61565 698 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 UBE3AQ05086 875 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 TUSC3Q13454 348 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 SNRNP35Q16560 246 aaKnown RBP8.96□□□□□ -0.98
USP54-212ENST00000480210 STX1AQ16623 288 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 ZCWPW2Q504Y3 356 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 SPOUT1Q5T280 376 aaKnown RBP8.96□□□□□ -0.98
USP54-212ENST00000480210 ANKRD40Q6AI12 368 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 ISM2Q6H9L7 571 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 FAM117BQ6P1L5 589 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 CRELD2Q6UXH1 353 aaPredicted RBP8.96□□□□□ -0.98
USP54-212ENST00000480210 INTS8Q75QN2 995 aaKnown RBP8.96□□□□□ -0.98
USP54-212ENST00000480210 ZC3H3Q8IXZ2 948 aaKnown RBP8.96□□□□□ -0.98
USP54-212ENST00000480210 GSTCDQ8NEC7 633 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 BEST2Q8NFU1 509 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 TMC2Q8TDI7 906 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 NELFBQ8WX92 580 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 LPPQ93052 612 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 TIFAQ96CG3 184 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 SNX27Q96L92 541 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 MFSD14AQ96MC6 490 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 FNBP1Q96RU3 617 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 PPP1R9BQ96SB3 815 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 FAM213AQ9BRX8 229 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 COLEC11Q9BWP8 271 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 HAPLN2Q9GZV7 340 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 RNF39Q9H2S5 420 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 SEMA6BQ9H3T3 888 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 PCIF1Q9H4Z3 704 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 TBC1D13Q9NVG8 400 aa8.96□□□□□ -0.98
USP54-212ENST00000480210 RBAKQ9NYW8 714 aaPredicted RBP8.96□□□□□ -0.98
USP54-212ENST00000480210 MAPK8IP1Q9UQF2 711 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms