RNA–Protein interactions for RNA: ENST00000480104.5

USP11-208, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 3

Gene USP11, Length 697 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-208ENST00000480104 SHROOM3Q8TF72 1996 aa13.38□□□□□ -0.27
USP11-208ENST00000480104 SF3B1O75533 1304 aaKnown RBP eCLIP13.38□□□□□ -0.27
USP11-208ENST00000480104 A0A087WV48 116 aa13.37□□□□□ -0.27
USP11-208ENST00000480104 UPK3BL1B0FP48 263 aa13.37□□□□□ -0.27
USP11-208ENST00000480104 UPK3BL2E5RIL1 263 aa13.37□□□□□ -0.27
USP11-208ENST00000480104 NMIQ13287 307 aaPredicted RBP13.37□□□□□ -0.27
USP11-208ENST00000480104 PMS2CLQ68D20 193 aa13.37□□□□□ -0.27
USP11-208ENST00000480104 MFSD6LQ8IWD5 586 aa13.37□□□□□ -0.27
USP11-208ENST00000480104 TTC8Q8TAM2 541 aa13.37□□□□□ -0.27
USP11-208ENST00000480104 LNX1Q8TBB1 728 aaPredicted RBP13.37□□□□□ -0.27
USP11-208ENST00000480104 RRP36Q96EU6 259 aaKnown RBP13.37□□□□□ -0.27
USP11-208ENST00000480104 TTPALQ9BTX7 342 aa13.37□□□□□ -0.27
USP11-208ENST00000480104 GABBR1Q9UBS5 961 aa13.37□□□□□ -0.27
USP11-208ENST00000480104 ABCA7Q8IZY2 2146 aa13.36□□□□□ -0.27
USP11-208ENST00000480104 COL6A6A6NMZ7 2263 aa13.36□□□□□ -0.27
USP11-208ENST00000480104 NUP205Q92621 2012 aa13.36□□□□□ -0.27
USP11-208ENST00000480104 MEIS1O00470 390 aa13.36□□□□□ -0.27
USP11-208ENST00000480104 DHX15O43143 795 aaKnown RBP13.36□□□□□ -0.27
USP11-208ENST00000480104 OATP04181 439 aa13.36□□□□□ -0.27
USP11-208ENST00000480104 CCR2P41597 374 aa13.36□□□□□ -0.27
USP11-208ENST00000480104 LMAN2Q12907 356 aa13.36□□□□□ -0.27
USP11-208ENST00000480104 RALGPS2Q86X27 583 aaPredicted RBP13.36□□□□□ -0.27
USP11-208ENST00000480104 SMG8Q8ND04 991 aaKnown RBP13.36□□□□□ -0.27
USP11-208ENST00000480104 PIP4K2CQ8TBX8 421 aa13.36□□□□□ -0.27
USP11-208ENST00000480104 PGBD1Q96JS3 809 aa13.36□□□□□ -0.27
USP11-208ENST00000480104 CORO1BQ9BR76 489 aa13.36□□□□□ -0.27
USP11-208ENST00000480104 KRT23Q9C075 422 aa13.36□□□□□ -0.27
USP11-208ENST00000480104 INO80BQ9C086 356 aaPredicted RBP13.36□□□□□ -0.27
USP11-208ENST00000480104 SENP2Q9HC62 589 aa13.36□□□□□ -0.27
USP11-208ENST00000480104 CACNG4Q9UBN1 327 aa13.36□□□□□ -0.27
USP11-208ENST00000480104 SEC63Q9UGP8 760 aaKnown RBP13.36□□□□□ -0.27
USP11-208ENST00000480104 EVLQ9UI08 416 aaPredicted RBP13.36□□□□□ -0.27
USP11-208ENST00000480104 HEPACAM2A8MVW5 462 aa13.35□□□□□ -0.27
USP11-208ENST00000480104 TADA2AO75478 443 aa13.35□□□□□ -0.27
USP11-208ENST00000480104 ITGA4P13612 1032 aa13.35□□□□□ -0.27
USP11-208ENST00000480104 ABCG1P45844 678 aa13.35□□□□□ -0.27
USP11-208ENST00000480104 PRKCEQ02156 737 aa13.35□□□□□ -0.27
USP11-208ENST00000480104 KCNC4Q03721 635 aa13.35□□□□□ -0.27
USP11-208ENST00000480104 RAB33AQ14088 237 aa13.35□□□□□ -0.27
USP11-208ENST00000480104 TRIM61Q5EBN2 209 aa13.35□□□□□ -0.27
USP11-208ENST00000480104 CYB5R4Q7L1T6 521 aa13.35□□□□□ -0.27
USP11-208ENST00000480104 ZNF410Q86VK4 478 aa13.35□□□□□ -0.27
USP11-208ENST00000480104 CEP57Q86XR8 500 aa13.35□□□□□ -0.27
USP11-208ENST00000480104 PLEKHM2Q8IWE5 1019 aa13.35□□□□□ -0.27
USP11-208ENST00000480104 CAMKK1Q8N5S9 505 aa13.35□□□□□ -0.27
USP11-208ENST00000480104 PNPLA1Q8N8W4 532 aa13.35□□□□□ -0.27
USP11-208ENST00000480104 LSM14AQ8ND56 463 aaKnown RBP13.35□□□□□ -0.27
USP11-208ENST00000480104 HASPINQ8TF76 798 aa13.35□□□□□ -0.27
USP11-208ENST00000480104 ADAMTS14Q8WXS8 1223 aa13.35□□□□□ -0.27
USP11-208ENST00000480104 PIGKQ92643 395 aa13.35□□□□□ -0.27
USP11-208ENST00000480104 EVI5LQ96CN4 794 aa13.35□□□□□ -0.27
USP11-208ENST00000480104 RSPRY1Q96DX4 576 aa13.35□□□□□ -0.27
USP11-208ENST00000480104 SPZ1Q9BXG8 430 aa13.35□□□□□ -0.27
USP11-208ENST00000480104 RNF39Q9H2S5 420 aa13.35□□□□□ -0.27
USP11-208ENST00000480104 UBN1Q9NPG3 1134 aa13.35□□□□□ -0.27
USP11-208ENST00000480104 DKK4Q9UBT3 224 aa13.35□□□□□ -0.27
USP11-208ENST00000480104 INVSQ9Y283 1065 aa13.35□□□□□ -0.27
USP11-208ENST00000480104 DOPEY1Q5JWR5 2465 aa13.34□□□□□ -0.27
USP11-208ENST00000480104 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.34□□□□□ -0.27
USP11-208ENST00000480104 CHADO15335 359 aa13.34□□□□□ -0.27
USP11-208ENST00000480104 PSAPP07602 524 aa13.34□□□□□ -0.27
USP11-208ENST00000480104 PTPN2P17706 415 aa13.34□□□□□ -0.27
USP11-208ENST00000480104 ENGP17813 658 aa13.34□□□□□ -0.27
USP11-208ENST00000480104 MX1P20591 662 aa13.34□□□□□ -0.27
USP11-208ENST00000480104 OR1D2P34982 312 aa13.34□□□□□ -0.27
USP11-208ENST00000480104 CDC42EP1Q00587 391 aa13.34□□□□□ -0.27
USP11-208ENST00000480104 FAM171A1Q5VUB5 890 aa13.34□□□□□ -0.27
USP11-208ENST00000480104 KSR1Q8IVT5 923 aa13.34□□□□□ -0.27
USP11-208ENST00000480104 SCUBE3Q8IX30 993 aa13.34□□□□□ -0.27
USP11-208ENST00000480104 YAF2Q8IY57 180 aa13.34□□□□□ -0.27
USP11-208ENST00000480104 ZSCAN18Q8TBC5 510 aaPredicted RBP13.34□□□□□ -0.27
USP11-208ENST00000480104 NLRP4Q96MN2 994 aa13.34□□□□□ -0.27
USP11-208ENST00000480104 TRPV4Q9HBA0 871 aa13.34□□□□□ -0.27
USP11-208ENST00000480104 PDCD11Q14690 1871 aaKnown RBP13.33□□□□□ -0.27
USP11-208ENST00000480104 GON4LQ3T8J9 2241 aa13.33□□□□□ -0.27
USP11-208ENST00000480104 PLXNB3Q9ULL4 1909 aa13.33□□□□□ -0.28
USP11-208ENST00000480104 ZNF197O14709 1029 aa13.33□□□□□ -0.28
USP11-208ENST00000480104 FTH1P19P0C7X4 201 aa13.33□□□□□ -0.28
USP11-208ENST00000480104 HOXA11P31270 313 aaPredicted RBP13.33□□□□□ -0.28
USP11-208ENST00000480104 ZNF746Q6NUN9 644 aaPredicted RBP13.33□□□□□ -0.28
USP11-208ENST00000480104 RTL10Q7L3V2 364 aa13.33□□□□□ -0.28
USP11-208ENST00000480104 RHPN2Q8IUC4 686 aa13.33□□□□□ -0.28
USP11-208ENST00000480104 PAAF1Q9BRP4 392 aa13.33□□□□□ -0.28
USP11-208ENST00000480104 NUSAP1Q9BXS6 441 aaKnown RBP13.33□□□□□ -0.28
USP11-208ENST00000480104 DCTPP1Q9H773 170 aa13.33□□□□□ -0.28
USP11-208ENST00000480104 CNNM2Q9H8M5 875 aa13.33□□□□□ -0.28
USP11-208ENST00000480104 SNTG2Q9NY99 539 aa13.33□□□□□ -0.28
USP11-208ENST00000480104 GTSE1Q9NYZ3 720 aa13.33□□□□□ -0.28
USP11-208ENST00000480104 TCEAL9Q9UHQ7 104 aa13.33□□□□□ -0.28
USP11-208ENST00000480104 MBD1Q9UIS9 605 aaPredicted RBP13.33□□□□□ -0.28
USP11-208ENST00000480104 HES2Q9Y543 173 aa13.33□□□□□ -0.28
USP11-208ENST00000480104 IPPQ9Y573 584 aa13.33□□□□□ -0.28
USP11-208ENST00000480104 PCDHA10Q9Y5I2 948 aa13.33□□□□□ -0.28
USP11-208ENST00000480104 MYH9P35579 1960 aaKnown RBP13.32□□□□□ -0.28
USP11-208ENST00000480104 IPO5O00410 1097 aaKnown RBP13.32□□□□□ -0.28
USP11-208ENST00000480104 ATG13O75143 517 aa13.32□□□□□ -0.28
USP11-208ENST00000480104 MICAL2O94851 1124 aa13.32□□□□□ -0.28
USP11-208ENST00000480104 NTRK1P04629 796 aa13.32□□□□□ -0.28
USP11-208ENST00000480104 BCKDHBP21953 392 aa13.32□□□□□ -0.28
USP11-208ENST00000480104 DHPSP49366 369 aaPredicted RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms