RNA–Protein interactions for RNA: ENST00000477573.1

RTFDC1-207, Transcript of Protein RTF2 homolog, humanhuman

TSL 1 (best)

Gene RTFDC1, Length 2,193 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-207ENST00000477573 SHMT1P34896 483 aa13.48□□□□□ -0.25
RTFDC1-207ENST00000477573 AP1B1Q10567 949 aa13.48□□□□□ -0.25
RTFDC1-207ENST00000477573 ZC2HC1CQ53FD0 456 aaPredicted RBP13.48□□□□□ -0.25
RTFDC1-207ENST00000477573 KLHL35Q6PF15 583 aa13.48□□□□□ -0.25
RTFDC1-207ENST00000477573 PIK3AP1Q6ZUJ8 805 aa13.48□□□□□ -0.25
RTFDC1-207ENST00000477573 NEK10Q6ZWH5 1172 aa13.48□□□□□ -0.25
RTFDC1-207ENST00000477573 CCDC125Q86Z20 511 aa13.48□□□□□ -0.25
RTFDC1-207ENST00000477573 ZSCAN29Q8IWY8 852 aaPredicted RBP13.48□□□□□ -0.25
RTFDC1-207ENST00000477573 FAM133AQ8N9E0 248 aa13.48□□□□□ -0.25
RTFDC1-207ENST00000477573 PLEKHO2Q8TD55 490 aa13.48□□□□□ -0.25
RTFDC1-207ENST00000477573 RBM12Q9NTZ6 932 aaKnown RBP13.48□□□□□ -0.25
RTFDC1-207ENST00000477573 CCDC194A0A1B0GVG4 234 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 GRID2IPA4D2P6 1211 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 CLASP2O75122 1294 aaKnown RBP13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 ENPP1P22413 925 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 TKTP29401 623 aaKnown RBP13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 GNA11P29992 359 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 RASSF2P50749 326 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 LRP8Q14114 963 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 UAP1Q16222 522 aaPredicted RBP13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 ARL13BQ3SXY8 428 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 BOLA3Q53S33 107 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 FAM209AQ5JX71 171 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 USP17L2Q6R6M4 530 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 TMCO5AQ8N6Q1 288 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 SLC17A8Q8NDX2 589 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 CCDC110Q8TBZ0 833 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 GPKOWQ92917 476 aaPredicted RBP eCLIP13.47□□□□□ -0.258e-6■■□□□ 13.6
RTFDC1-207ENST00000477573 ANKRD36BP1Q96IX9 119 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 CHP1Q99653 195 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 PDGFDQ9GZP0 370 aaPredicted RBP13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 MAGEC2Q9UBF1 373 aaPredicted RBP13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 ZNHIT2Q9UHR6 403 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 HDAC9Q9UKV0 1011 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 PPP1R9AQ9ULJ8 1098 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 SATB2Q9UPW6 733 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 MYH10P35580 1976 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 SH3PXD2BA1X283 911 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 FAM205CA6NFA0 338 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 MAP3K7O43318 606 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 SPAG1Q07617 926 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 EARS2Q5JPH6 523 aaKnown RBP13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 RNF43Q68DV7 783 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 LRRC74BQ6ZQY2 392 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 CROCCP2Q86T23 111 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 LARGE2Q8N3Y3 721 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 SPERTQ8NA61 448 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 GABPB2Q8TAK5 448 aaPredicted RBP13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 NSMCE3Q96MG7 304 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 MED15Q96RN5 788 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 INTS9Q9NV88 658 aaKnown RBP13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 TMOD2Q9NZR1 351 aa13.47□□□□□ -0.25
RTFDC1-207ENST00000477573 ZNF646O15015 1829 aaPredicted RBP13.46□□□□□ -0.25
RTFDC1-207ENST00000477573 A6NJR5 290 aa13.46□□□□□ -0.25
RTFDC1-207ENST00000477573 USP17L5A8MUK1 530 aa13.46□□□□□ -0.25
RTFDC1-207ENST00000477573 MAGEB3O15480 346 aa13.46□□□□□ -0.25
RTFDC1-207ENST00000477573 ENTPD3O75355 529 aa13.46□□□□□ -0.25
RTFDC1-207ENST00000477573 ZBED1O96006 694 aa13.46□□□□□ -0.25
RTFDC1-207ENST00000477573 SHBGP04278 402 aa13.46□□□□□ -0.25
RTFDC1-207ENST00000477573 DPEP1P16444 411 aa13.46□□□□□ -0.25
RTFDC1-207ENST00000477573 NAPAP54920 295 aa13.46□□□□□ -0.25
RTFDC1-207ENST00000477573 TCP10Q12799 353 aa13.46□□□□□ -0.25
RTFDC1-207ENST00000477573 ZNF174Q15697 407 aa13.46□□□□□ -0.25
RTFDC1-207ENST00000477573 KRT71Q3SY84 523 aa13.46□□□□□ -0.25
RTFDC1-207ENST00000477573 NELFCDQ8IXH7 590 aa13.46□□□□□ -0.25
RTFDC1-207ENST00000477573 TRMT44Q8IYL2 757 aaKnown RBP13.46□□□□□ -0.25
RTFDC1-207ENST00000477573 FITM2Q8N6M3 262 aa13.46□□□□□ -0.25
RTFDC1-207ENST00000477573 EFHD2Q96C19 240 aaPredicted RBP13.46□□□□□ -0.25
RTFDC1-207ENST00000477573 PYM1Q9BRP8 204 aaKnown RBP13.46□□□□□ -0.25
RTFDC1-207ENST00000477573 PARVGQ9HBI0 331 aa13.46□□□□□ -0.25
RTFDC1-207ENST00000477573 C6orf50Q9HD87 102 aa13.46□□□□□ -0.25
RTFDC1-207ENST00000477573 SNX9Q9Y5X1 595 aa13.46□□□□□ -0.25
RTFDC1-207ENST00000477573 FAM47E-STBD1D6RA91 191 aa13.45□□□□□ -0.26
RTFDC1-207ENST00000477573 SNHG28P0DPA3 235 aa13.45□□□□□ -0.26
RTFDC1-207ENST00000477573 MYBP10242 640 aa13.45□□□□□ -0.26
RTFDC1-207ENST00000477573 FOSL1P15407 271 aa13.45□□□□□ -0.26
RTFDC1-207ENST00000477573 VEGFAP15692 232 aaPredicted RBP13.45□□□□□ -0.26
RTFDC1-207ENST00000477573 TGFB2P61812 414 aa13.45□□□□□ -0.26
RTFDC1-207ENST00000477573 ATP2C1P98194 919 aaPredicted RBP13.45□□□□□ -0.26
RTFDC1-207ENST00000477573 PLCB3Q01970 1234 aa13.45□□□□□ -0.26
RTFDC1-207ENST00000477573 SLC34A1Q06495 639 aa13.45□□□□□ -0.26
RTFDC1-207ENST00000477573 ACVR2BQ13705 512 aa13.45□□□□□ -0.26
RTFDC1-207ENST00000477573 SPCS2Q15005 226 aa13.45□□□□□ -0.26
RTFDC1-207ENST00000477573 GPATCH4Q5T3I0 446 aaKnown RBP13.45□□□□□ -0.26
RTFDC1-207ENST00000477573 RSBN1LQ6PCB5 846 aaPredicted RBP13.45□□□□□ -0.26
RTFDC1-207ENST00000477573 ACMSDQ8TDX5 336 aa13.45□□□□□ -0.26
RTFDC1-207ENST00000477573 ZMYND12Q9H0C1 365 aa13.45□□□□□ -0.26
RTFDC1-207ENST00000477573 CSRNP2Q9H175 543 aa13.45□□□□□ -0.26
RTFDC1-207ENST00000477573 RIOX1Q9H6W3 641 aa13.45□□□□□ -0.26
RTFDC1-207ENST00000477573 METTL14Q9HCE5 456 aaKnown RBP13.45□□□□□ -0.26
RTFDC1-207ENST00000477573 ZNF212Q9UDV6 495 aa13.45□□□□□ -0.26
RTFDC1-207ENST00000477573 FAM198AQ9UFP1 575 aa13.45□□□□□ -0.26
RTFDC1-207ENST00000477573 LIMA1Q9UHB6 759 aaKnown RBP13.45□□□□□ -0.26
RTFDC1-207ENST00000477573 TRIM17Q9Y577 477 aa13.45□□□□□ -0.26
RTFDC1-207ENST00000477573 PSME4Q14997 1843 aa13.45□□□□□ -0.26
RTFDC1-207ENST00000477573 TRIM64CA6NLI5 447 aa13.45□□□□□ -0.26
RTFDC1-207ENST00000477573 YDJCA8MPS7 323 aa13.45□□□□□ -0.26
RTFDC1-207ENST00000477573 TEX28O15482 410 aa13.45□□□□□ -0.26
RTFDC1-207ENST00000477573 POLR2DO15514 142 aaKnown RBP13.45□□□□□ -0.26
RTFDC1-207ENST00000477573 FBXO21O94952 628 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms