RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 CCDC148Q8NFR7 591 aa7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 CYP2W1Q8TAV3 490 aa7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 BICD2Q8TD16 824 aa7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 LMBR1Q8WVP7 490 aa7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 TNPO1Q92973 898 aaKnown RBP7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 PHKBQ93100 1093 aa7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 SLC26A6Q9BXS9 759 aa7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 TM6SF1Q9BZW5 370 aa7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 AGO4Q9HCK5 861 aaKnown RBP7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 COL4A4P53420 1690 aaPredicted RBP7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 NLRC5Q86WI3 1866 aa7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 TRANK1O15050 2925 aa7.72□□□□□ -1.17
CCDC88A-213ENST00000476903 MBLAC1A4D2B0 266 aaPredicted RBP7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 CPLX1O14810 134 aa7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 ATG7O95352 703 aa7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 AMHP03971 560 aa7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 RPLP2P05387 115 aaKnown RBP7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 CYP3A4P08684 503 aa7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 CTSHP09668 335 aa7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 ARP10275 920 aa7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 EDN3P14138 238 aa7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 ACTR2P61160 394 aa7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 CCT2P78371 535 aaKnown RBP7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 DEFB103AP81534 67 aa7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 SETQ01105 290 aaPredicted RBP7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 SSRP1Q08945 709 aaKnown RBP7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 ITGB3BPQ13352 177 aaPredicted RBP7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 NTRK3Q16288 839 aa7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 TCTN1Q2MV58 587 aa7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 PLEKHG4Q58EX7 1191 aa7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 DYMQ7RTS9 669 aa7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 RPAINQ86UA6 219 aa7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 PLA2G4DQ86XP0 818 aa7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 SEPT8Q92599 483 aa7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 APBB2Q92870 758 aa7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 ZNF274Q96GC6 653 aaPredicted RBP7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 UPF3BQ9BZI7 483 aaKnown RBP7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 NCOA5Q9HCD5 579 aaKnown RBP7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 SH3GLB2Q9NR46 395 aa7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 PDRG1Q9NUG6 133 aa7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 TUBE1Q9UJT0 475 aa7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 U3KQE9 123 aa7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 REV3LO60673 3130 aa7.71□□□□□ -1.18
CCDC88A-213ENST00000476903 RALGAPA2Q2PPJ7 1873 aa7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 PRRC2BQ5JSZ5 2229 aaKnown RBP7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 RRN3P2A6NIE6 340 aa7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 FAM86B1E9PN63 330 aa7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 IPO5O00410 1097 aaKnown RBP7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 GJB5O95377 273 aa7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 ECEL1O95672 775 aa7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 CENPBP07199 599 aaPredicted RBP7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 FAM86B2P0C5J1 330 aa7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 SLC26A2P50443 739 aa7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 STAT5BP51692 787 aa7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 NLRP5P59047 1200 aa7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 TAP1Q03518 808 aa7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 KRTAP19-4Q3LI73 84 aa7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 CPLX2Q6PUV4 134 aaKnown RBP7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 RUFY4Q6ZNE9 571 aa7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 PLPPR4Q7Z2D5 763 aa7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 TMCO2Q7Z6W1 182 aaPredicted RBP7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 USP38Q8NB14 1042 aa7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 DBF4BQ8NFT6 615 aa7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 HELQQ8TDG4 1101 aa7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 CRYGNQ8WXF5 182 aa7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 PPM1EQ8WY54 764 aa7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 MISP3Q96FF7 219 aa7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 PCYT2Q99447 389 aa7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 RAD9AQ99638 391 aa7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 ZNF577Q9BSK1 485 aa7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 IFIH1Q9BYX4 1025 aaKnown RBP7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 RC3H2Q9HBD1 1191 aaKnown RBP7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 VPS54Q9P1Q0 977 aa7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 TCEAL9Q9UHQ7 104 aa7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 FOXD3Q9UJU5 478 aaPredicted RBP7.7□□□□□ -1.18
CCDC88A-213ENST00000476903 IGLV3-22A0A075B6J6 115 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 IGKV6D-21A0A0A0MT36 114 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 M0QZ92 97 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 DDX39AO00148 427 aaKnown RBP7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 ADAMTS3O15072 1205 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 CDKL5O76039 1030 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 DEXIO95424 95 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 CCNE2O96020 404 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 CHRNA1P02708 482 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 INSRRP14616 1297 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 CIITAP33076 1130 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 ANAPC15P60006 121 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 IGBP1P78318 339 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 MGAT3Q09327 533 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 STK3Q13188 491 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 PLCB4Q15147 1175 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 PRR16Q569H4 304 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 MARCH8Q5T0T0 291 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 FAM160B1Q5W0V3 765 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 ZNF746Q6NUN9 644 aaPredicted RBP7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 MIS18BP1Q6P0N0 1132 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 LIN28BQ6ZN17 250 aaKnown RBP eCLIP7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 MYOCDQ8IZQ8 938 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 FAM177A1Q8N128 213 aaPredicted RBP7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 PLD6Q8N2A8 252 aaKnown RBP7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms