RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 EPS15L1Q9UBC2 864 aa21.74■■□□□ 1.07
COL9A3-210ENST00000472880 DNM3Q9UQ16 869 aa21.74■■□□□ 1.07
COL9A3-210ENST00000472880 CCDC169A6NNP5 214 aa21.73■■□□□ 1.07
COL9A3-210ENST00000472880 K7ERI5 159 aa21.73■■□□□ 1.07
COL9A3-210ENST00000472880 ZMYND10O75800 440 aa21.73■■□□□ 1.07
COL9A3-210ENST00000472880 TOB1P50616 345 aaPredicted RBP21.73■■□□□ 1.07
COL9A3-210ENST00000472880 CLCN5P51795 746 aa21.73■■□□□ 1.07
COL9A3-210ENST00000472880 C8orf34Q49A92 452 aa21.73■■□□□ 1.07
COL9A3-210ENST00000472880 GLRA4Q5JXX5 417 aa21.73■■□□□ 1.07
COL9A3-210ENST00000472880 NT5DC1Q5TFE4 455 aa21.73■■□□□ 1.07
COL9A3-210ENST00000472880 LIN9Q5TKA1 542 aa21.73■■□□□ 1.07
COL9A3-210ENST00000472880 MYADMQ96S97 322 aa21.73■■□□□ 1.07
COL9A3-210ENST00000472880 FBXW11Q9UKB1 542 aa21.73■■□□□ 1.07
COL9A3-210ENST00000472880 PP2D1A8MPX8 630 aa21.72■■□□□ 1.07
COL9A3-210ENST00000472880 E9PMD0 336 aa21.72■■□□□ 1.07
COL9A3-210ENST00000472880 PEX3P56589 373 aa21.72■■□□□ 1.07
COL9A3-210ENST00000472880 DMP1Q13316 513 aaPredicted RBP21.72■■□□□ 1.07
COL9A3-210ENST00000472880 CWF19L1Q69YN2 538 aaKnown RBP21.72■■□□□ 1.07
COL9A3-210ENST00000472880 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.72■■□□□ 1.07
COL9A3-210ENST00000472880 SIX5Q8N196 739 aa21.72■■□□□ 1.07
COL9A3-210ENST00000472880 LNX1Q8TBB1 728 aaPredicted RBP21.72■■□□□ 1.07
COL9A3-210ENST00000472880 RSAD2Q8WXG1 361 aa21.72■■□□□ 1.07
COL9A3-210ENST00000472880 DRC1Q96MC2 740 aa21.72■■□□□ 1.07
COL9A3-210ENST00000472880 CLSTN3Q9BQT9 956 aa21.72■■□□□ 1.07
COL9A3-210ENST00000472880 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP21.72■■□□□ 1.07
COL9A3-210ENST00000472880 TNFSF13BQ9Y275 285 aa21.72■■□□□ 1.07
COL9A3-210ENST00000472880 NARSO43776 548 aaKnown RBP21.71■■□□□ 1.07
COL9A3-210ENST00000472880 HIP1RO75146 1068 aa21.71■■□□□ 1.07
COL9A3-210ENST00000472880 PRPHP41219 470 aa21.71■■□□□ 1.07
COL9A3-210ENST00000472880 NPTX2P47972 431 aa21.71■■□□□ 1.07
COL9A3-210ENST00000472880 YARSP54577 528 aaKnown RBP21.71■■□□□ 1.07
COL9A3-210ENST00000472880 ZNF568Q3ZCX4 644 aa21.71■■□□□ 1.07
COL9A3-210ENST00000472880 DTHD1Q6ZMT9 781 aa21.71■■□□□ 1.07
COL9A3-210ENST00000472880 NXPE3Q969Y0 559 aa21.71■■□□□ 1.07
COL9A3-210ENST00000472880 PPP1R10Q96QC0 940 aaKnown RBP21.71■■□□□ 1.07
COL9A3-210ENST00000472880 TOPORSQ9NS56 1045 aaPredicted RBP21.71■■□□□ 1.07
COL9A3-210ENST00000472880 TMEM189-UBE2V1I3L0A0 370 aa21.7■■□□□ 1.06
COL9A3-210ENST00000472880 ST18O60284 1047 aa21.7■■□□□ 1.06
COL9A3-210ENST00000472880 B3GAT3O94766 335 aa21.7■■□□□ 1.06
COL9A3-210ENST00000472880 C8AP07357 584 aa21.7■■□□□ 1.06
COL9A3-210ENST00000472880 RABEP1Q15276 862 aa21.7■■□□□ 1.06
COL9A3-210ENST00000472880 PPM1LQ5SGD2 360 aa21.7■■□□□ 1.06
COL9A3-210ENST00000472880 MCTP1Q6DN14 999 aa21.7■■□□□ 1.06
COL9A3-210ENST00000472880 UROC1Q96N76 676 aa21.7■■□□□ 1.06
COL9A3-210ENST00000472880 CCDC94Q9BW85 323 aaPredicted RBP21.7■■□□□ 1.06
COL9A3-210ENST00000472880 MRPL4Q9BYD3 311 aaKnown RBP21.7■■□□□ 1.06
COL9A3-210ENST00000472880 CDT1Q9H211 546 aa21.7■■□□□ 1.06
COL9A3-210ENST00000472880 KMT5AQ9NQR1 393 aa21.7■■□□□ 1.06
COL9A3-210ENST00000472880 EIF4ENIF1Q9NRA8 985 aaKnown RBP21.7■■□□□ 1.06
COL9A3-210ENST00000472880 GFRA3O60609 400 aa21.69■■□□□ 1.06
COL9A3-210ENST00000472880 CFHP08603 1231 aa21.69■■□□□ 1.06
COL9A3-210ENST00000472880 HNRNPA1P09651 372 aaKnown RBP eCLIP21.69■■□□□ 1.06
COL9A3-210ENST00000472880 AOC1P19801 751 aa21.69■■□□□ 1.06
COL9A3-210ENST00000472880 RFX1P22670 979 aa21.69■■□□□ 1.06
COL9A3-210ENST00000472880 CDC25AP30304 524 aa21.69■■□□□ 1.06
COL9A3-210ENST00000472880 GRM5P41594 1212 aa21.69■■□□□ 1.06
COL9A3-210ENST00000472880 CLCNKBP51801 687 aa21.69■■□□□ 1.06
COL9A3-210ENST00000472880 DAW1Q8N136 415 aa21.69■■□□□ 1.06
COL9A3-210ENST00000472880 CEP120Q8N960 986 aa21.69■■□□□ 1.06
COL9A3-210ENST00000472880 ACO2Q99798 780 aaKnown RBP21.69■■□□□ 1.06
COL9A3-210ENST00000472880 RUSC1Q9BVN2 902 aa21.69■■□□□ 1.06
COL9A3-210ENST00000472880 TMEM134Q9H6X4 195 aa21.69■■□□□ 1.06
COL9A3-210ENST00000472880 VWA8A3KMH1 1905 aa21.68■■□□□ 1.06
COL9A3-210ENST00000472880 TRAPPC3O43617 180 aa21.68■■□□□ 1.06
COL9A3-210ENST00000472880 SRFP11831 508 aa21.68■■□□□ 1.06
COL9A3-210ENST00000472880 LAMP2P13473 410 aa21.68■■□□□ 1.06
COL9A3-210ENST00000472880 FSHRP23945 695 aa21.68■■□□□ 1.06
COL9A3-210ENST00000472880 ZRSR1Q15695 479 aaKnown RBP21.68■■□□□ 1.06
COL9A3-210ENST00000472880 IL17AQ16552 155 aa21.68■■□□□ 1.06
COL9A3-210ENST00000472880 RILPL1Q5EBL4 403 aa21.68■■□□□ 1.06
COL9A3-210ENST00000472880 DCLRE1AQ6PJP8 1040 aa21.68■■□□□ 1.06
COL9A3-210ENST00000472880 GRASPQ7Z6J2 395 aaPredicted RBP21.68■■□□□ 1.06
COL9A3-210ENST00000472880 RTP3Q9BQQ7 232 aa21.68■■□□□ 1.06
COL9A3-210ENST00000472880 C17orf75Q9HAS0 396 aa21.68■■□□□ 1.06
COL9A3-210ENST00000472880 GOLGA2P5Q9HBQ8 144 aa21.68■■□□□ 1.06
COL9A3-210ENST00000472880 ARHGAP28Q9P2N2 729 aa21.68■■□□□ 1.06
COL9A3-210ENST00000472880 WNT16Q9UBV4 365 aa21.68■■□□□ 1.06
COL9A3-210ENST00000472880 POLIQ9UNA4 740 aa21.68■■□□□ 1.06
COL9A3-210ENST00000472880 RBM19Q9Y4C8 960 aaKnown RBP21.68■■□□□ 1.06
COL9A3-210ENST00000472880 DOCK8Q8NF50 2099 aa21.67■■□□□ 1.06
COL9A3-210ENST00000472880 ADAM12O43184 909 aa21.67■■□□□ 1.06
COL9A3-210ENST00000472880 XYLBO75191 536 aa21.67■■□□□ 1.06
COL9A3-210ENST00000472880 NPR3P17342 541 aa21.67■■□□□ 1.06
COL9A3-210ENST00000472880 FGFR3P22607 806 aa21.67■■□□□ 1.06
COL9A3-210ENST00000472880 HOXA9P31269 272 aa21.67■■□□□ 1.06
COL9A3-210ENST00000472880 OR1D2P34982 312 aa21.67■■□□□ 1.06
COL9A3-210ENST00000472880 OSTNP61366 133 aa21.67■■□□□ 1.06
COL9A3-210ENST00000472880 UPP1Q16831 310 aa21.67■■□□□ 1.06
COL9A3-210ENST00000472880 RINT1Q6NUQ1 792 aa21.67■■□□□ 1.06
COL9A3-210ENST00000472880 SLC44A3Q8N4M1 653 aa21.67■■□□□ 1.06
COL9A3-210ENST00000472880 SLC7A14Q8TBB6 771 aa21.67■■□□□ 1.06
COL9A3-210ENST00000472880 MMTAG2Q9BU76 263 aaKnown RBP21.67■■□□□ 1.06
COL9A3-210ENST00000472880 TIPINQ9BVW5 301 aa21.67■■□□□ 1.06
COL9A3-210ENST00000472880 TARS2Q9BW92 718 aaKnown RBP21.67■■□□□ 1.06
COL9A3-210ENST00000472880 SLC38A7Q9NVC3 462 aa21.67■■□□□ 1.06
COL9A3-210ENST00000472880 MTRRQ9UBK8 725 aa21.67■■□□□ 1.06
COL9A3-210ENST00000472880 ZFP37Q9Y6Q3 630 aaPredicted RBP21.67■■□□□ 1.06
COL9A3-210ENST00000472880 SMIM28A0A1B0GU29 152 aa21.66■■□□□ 1.06
COL9A3-210ENST00000472880 STK25O00506 426 aa21.66■■□□□ 1.06
COL9A3-210ENST00000472880 CCL16O15467 120 aa21.66■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms