RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 ARHGAP28Q9P2N2 729 aa17.27■□□□□ 0.36
CCDC88B-205ENST00000472524 TNFSF13BQ9Y275 285 aa17.27■□□□□ 0.36
CCDC88B-205ENST00000472524 SF3B1O75533 1304 aaKnown RBP eCLIP17.26■□□□□ 0.35
CCDC88B-205ENST00000472524 MYH15Q9Y2K3 1946 aa17.26■□□□□ 0.35
CCDC88B-205ENST00000472524 GALR2O43603 387 aaPredicted RBP17.26■□□□□ 0.35
CCDC88B-205ENST00000472524 GFRA3O60609 400 aa17.26■□□□□ 0.35
CCDC88B-205ENST00000472524 KIF4AO95239 1232 aa17.26■□□□□ 0.35
CCDC88B-205ENST00000472524 GLUD1P00367 558 aa17.26■□□□□ 0.35
CCDC88B-205ENST00000472524 PLA2G4BP0C869 781 aa17.26■□□□□ 0.35
CCDC88B-205ENST00000472524 GUCY2CP25092 1073 aa17.26■□□□□ 0.35
CCDC88B-205ENST00000472524 CUL4AQ13619 759 aa17.26■□□□□ 0.35
CCDC88B-205ENST00000472524 TMEM119Q4V9L6 283 aa17.26■□□□□ 0.35
CCDC88B-205ENST00000472524 BRAPQ7Z569 592 aa17.26■□□□□ 0.35
CCDC88B-205ENST00000472524 CEP120Q8N960 986 aa17.26■□□□□ 0.35
CCDC88B-205ENST00000472524 SYT2Q8N9I0 419 aaPredicted RBP17.26■□□□□ 0.35
CCDC88B-205ENST00000472524 ACO2Q99798 780 aaKnown RBP17.26■□□□□ 0.35
CCDC88B-205ENST00000472524 TIPINQ9BVW5 301 aa17.26■□□□□ 0.35
CCDC88B-205ENST00000472524 TARS2Q9BW92 718 aaKnown RBP17.26■□□□□ 0.35
CCDC88B-205ENST00000472524 CDT1Q9H211 546 aa17.26■□□□□ 0.35
CCDC88B-205ENST00000472524 TMEM134Q9H6X4 195 aa17.26■□□□□ 0.35
CCDC88B-205ENST00000472524 RXFP1Q9HBX9 757 aa17.26■□□□□ 0.35
CCDC88B-205ENST00000472524 CHST7Q9NS84 486 aa17.26■□□□□ 0.35
CCDC88B-205ENST00000472524 NPHP3-ACAD11A0A0J9YXS1 232 aa17.25■□□□□ 0.35
CCDC88B-205ENST00000472524 SPATA31D3P0C874 917 aa17.25■□□□□ 0.35
CCDC88B-205ENST00000472524 HARSP12081 509 aaKnown RBP17.25■□□□□ 0.35
CCDC88B-205ENST00000472524 RPL17P18621 184 aaKnown RBP17.25■□□□□ 0.35
CCDC88B-205ENST00000472524 SLC12A3P55017 1021 aa17.25■□□□□ 0.35
CCDC88B-205ENST00000472524 OSTNP61366 133 aa17.25■□□□□ 0.35
CCDC88B-205ENST00000472524 CACNB1Q02641 598 aaPredicted RBP17.25■□□□□ 0.35
CCDC88B-205ENST00000472524 NAB2Q15742 525 aa17.25■□□□□ 0.35
CCDC88B-205ENST00000472524 PRSS55Q6UWB4 352 aaPredicted RBP17.25■□□□□ 0.35
CCDC88B-205ENST00000472524 SPATA31D4Q6ZUB0 917 aa17.25■□□□□ 0.35
CCDC88B-205ENST00000472524 PALB2Q86YC2 1186 aa17.25■□□□□ 0.35
CCDC88B-205ENST00000472524 PLCD3Q8N3E9 789 aa17.25■□□□□ 0.35
CCDC88B-205ENST00000472524 CCDC94Q9BW85 323 aaPredicted RBP17.25■□□□□ 0.35
CCDC88B-205ENST00000472524 C17orf75Q9HAS0 396 aa17.25■□□□□ 0.35
CCDC88B-205ENST00000472524 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.25■□□□□ 0.35
CCDC88B-205ENST00000472524 RBM19Q9Y4C8 960 aaKnown RBP17.25■□□□□ 0.35
CCDC88B-205ENST00000472524 BMP15O95972 392 aa17.24■□□□□ 0.35
CCDC88B-205ENST00000472524 PLS3P13797 630 aa17.24■□□□□ 0.35
CCDC88B-205ENST00000472524 UBA7P41226 1012 aa17.24■□□□□ 0.35
CCDC88B-205ENST00000472524 NUBP1P53384 320 aa17.24■□□□□ 0.35
CCDC88B-205ENST00000472524 GRIN1Q05586 938 aa17.24■□□□□ 0.35
CCDC88B-205ENST00000472524 SF3A1Q15459 793 aaKnown RBP17.24■□□□□ 0.35
CCDC88B-205ENST00000472524 RTP2Q5QGT7 225 aa17.24■□□□□ 0.35
CCDC88B-205ENST00000472524 FAM171A1Q5VUB5 890 aa17.24■□□□□ 0.35
CCDC88B-205ENST00000472524 ELMSAN1Q6PJG2 1045 aa17.24■□□□□ 0.35
CCDC88B-205ENST00000472524 CCDC149Q6ZUS6 474 aa17.24■□□□□ 0.35
CCDC88B-205ENST00000472524 CEP57Q86XR8 500 aa17.24■□□□□ 0.35
CCDC88B-205ENST00000472524 CALML4Q96GE6 196 aa17.24■□□□□ 0.35
CCDC88B-205ENST00000472524 AK8Q96MA6 479 aa17.24■□□□□ 0.35
CCDC88B-205ENST00000472524 TCHPQ9BT92 498 aa17.24■□□□□ 0.35
CCDC88B-205ENST00000472524 IRF2BPLQ9H1B7 796 aa17.24■□□□□ 0.35
CCDC88B-205ENST00000472524 MYO15AQ9UKN7 3530 aa17.23■□□□□ 0.35
CCDC88B-205ENST00000472524 ZFHX2Q9C0A1 2572 aaPredicted RBP17.23■□□□□ 0.35
CCDC88B-205ENST00000472524 CCDC195A0A1B0GUA6 201 aa17.23■□□□□ 0.35
CCDC88B-205ENST00000472524 RFPL2O75678 378 aa17.23■□□□□ 0.35
CCDC88B-205ENST00000472524 GRM5P41594 1212 aa17.23■□□□□ 0.35
CCDC88B-205ENST00000472524 SMTNP53814 917 aa17.23■□□□□ 0.35
CCDC88B-205ENST00000472524 YARSP54577 528 aaKnown RBP17.23■□□□□ 0.35
CCDC88B-205ENST00000472524 STRN3Q13033 797 aa17.23■□□□□ 0.35
CCDC88B-205ENST00000472524 DHX8Q14562 1220 aaKnown RBP17.23■□□□□ 0.35
CCDC88B-205ENST00000472524 ASTLQ6HA08 431 aaPredicted RBP17.23■□□□□ 0.35
CCDC88B-205ENST00000472524 OTOP3Q7RTS5 596 aa17.23■□□□□ 0.35
CCDC88B-205ENST00000472524 KCTD17Q8N5Z5 321 aa17.23■□□□□ 0.35
CCDC88B-205ENST00000472524 RASSF8Q8NHQ8 419 aa17.23■□□□□ 0.35
CCDC88B-205ENST00000472524 ACSF2Q96CM8 615 aaPredicted RBP17.23■□□□□ 0.35
CCDC88B-205ENST00000472524 PPP1R10Q96QC0 940 aaKnown RBP17.23■□□□□ 0.35
CCDC88B-205ENST00000472524 TTPALQ9BTX7 342 aa17.23■□□□□ 0.35
CCDC88B-205ENST00000472524 BACH2Q9BYV9 841 aa17.23■□□□□ 0.35
CCDC88B-205ENST00000472524 GOLGA2P5Q9HBQ8 144 aa17.23■□□□□ 0.35
CCDC88B-205ENST00000472524 PTPRHQ9HD43 1115 aa17.23■□□□□ 0.35
CCDC88B-205ENST00000472524 FNIP2Q9P278 1114 aa17.23■□□□□ 0.35
CCDC88B-205ENST00000472524 ANKFY1Q9P2R3 1169 aa17.23■□□□□ 0.35
CCDC88B-205ENST00000472524 DPP7Q9UHL4 492 aa17.23■□□□□ 0.35
CCDC88B-205ENST00000472524 TGM5O43548 720 aa17.22■□□□□ 0.35
CCDC88B-205ENST00000472524 PDCP20941 246 aa17.22■□□□□ 0.35
CCDC88B-205ENST00000472524 CREMQ03060 361 aa17.22■□□□□ 0.35
CCDC88B-205ENST00000472524 KARSQ15046 597 aaKnown RBP17.22■□□□□ 0.35
CCDC88B-205ENST00000472524 MPZL3Q6UWV2 235 aa17.22■□□□□ 0.35
CCDC88B-205ENST00000472524 C15orf39Q6ZRI6 1047 aa17.22■□□□□ 0.35
CCDC88B-205ENST00000472524 GPBP1Q86WP2 473 aa17.22■□□□□ 0.35
CCDC88B-205ENST00000472524 GPR65Q8IYL9 337 aa17.22■□□□□ 0.35
CCDC88B-205ENST00000472524 TMEM161BQ8NDZ6 487 aa17.22■□□□□ 0.35
CCDC88B-205ENST00000472524 CMASQ8NFW8 434 aaPredicted RBP17.22■□□□□ 0.35
CCDC88B-205ENST00000472524 LRRC15Q8TF66 581 aa17.22■□□□□ 0.35
CCDC88B-205ENST00000472524 SPIRE2Q8WWL2 714 aa17.22■□□□□ 0.35
CCDC88B-205ENST00000472524 ZBTB45Q96K62 511 aaPredicted RBP17.22■□□□□ 0.35
CCDC88B-205ENST00000472524 MFSD1Q9H3U5 465 aa17.22■□□□□ 0.35
CCDC88B-205ENST00000472524 TOPORSQ9NS56 1045 aaPredicted RBP17.22■□□□□ 0.35
CCDC88B-205ENST00000472524 FOXD4L1Q9NU39 408 aa17.22■□□□□ 0.35
CCDC88B-205ENST00000472524 KCND2Q9NZV8 630 aa17.22■□□□□ 0.35
CCDC88B-205ENST00000472524 CFAP54Q96N23 3096 aa17.22■□□□□ 0.35
CCDC88B-205ENST00000472524 CACNA1HO95180 2353 aa17.22■□□□□ 0.35
CCDC88B-205ENST00000472524 SLC26A4O43511 780 aa17.21■□□□□ 0.35
CCDC88B-205ENST00000472524 N4BP1O75113 896 aaKnown RBP17.21■□□□□ 0.35
CCDC88B-205ENST00000472524 B3GAT3O94766 335 aa17.21■□□□□ 0.35
CCDC88B-205ENST00000472524 MAPTP10636 758 aaKnown RBP17.21■□□□□ 0.35
CCDC88B-205ENST00000472524 MCF2P10911 925 aa17.21■□□□□ 0.35
CCDC88B-205ENST00000472524 PLCG1P19174 1290 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms