RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 GRAPQ13588 217 aa13.96□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 GRAPLQ8TC17 118 aaPredicted RBP13.96□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 CEP95Q96GE4 821 aa13.96□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 HIST1H2AHQ96KK5 128 aa13.96□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 FAM167AQ96KS9 214 aa13.96□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 HIST1H2AJQ99878 128 aa13.96□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 H2AFJQ9BTM1 129 aa13.96□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 TMEM260Q9NX78 707 aa13.96□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 ZC3H7BQ9UGR2 993 aaKnown RBP13.96□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 TAF1CQ15572 869 aaPredicted RBP13.96□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 ANKMY2Q8IV38 441 aa13.96□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 FOXP4Q8IVH2 680 aaPredicted RBP13.96□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 ZBED8Q8IZ13 594 aa13.96□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 SNX31Q8N9S9 440 aa13.96□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 SPASTQ9UBP0 616 aa13.96□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 LZTS3O60299 673 aaPredicted RBP13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 PRDX5P30044 214 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 GYS2P54840 703 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 APBA1Q02410 837 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 LRRC36Q1X8D7 754 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 APOL5Q9BWW9 433 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 NR3C1P04150 777 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 CALB1P05937 261 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 PDIA2Q13087 525 aaKnown RBP13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 TMA16Q96EY4 203 aaKnown RBP13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 TRAPPC8Q9Y2L5 1435 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 NDUFS3O75489 264 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 HMGCS2P54868 508 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 GPC5P78333 572 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 CDK17Q00537 523 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 CUL3Q13618 768 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 RASGRF1Q13972 1273 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 ACTR5Q9H9F9 607 aaPredicted RBP13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 MLH3Q9UHC1 1453 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 WDR47O94967 919 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 FKBP9O95302 570 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 FTLP02792 175 aaPredicted RBP13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 ST13P50502 369 aaKnown RBP13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 SUSD4Q5VX71 490 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 FKBP9P1Q75LS8 142 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 APOBEC3FQ8IUX4 373 aaKnown RBP13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 SLC44A2Q8IWA5 706 aaPredicted RBP13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 USP6NLQ92738 828 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 FEM1BQ9UK73 627 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 ITGAXP20702 1163 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 PLEKHA8Q96JA3 519 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 CNOT10Q9H9A5 744 aaKnown RBP13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 PARD3Q8TEW0 1356 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 DMTNQ08495 405 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 CYTH1Q15438 398 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 DUOXA2Q1HG44 320 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 KRT39Q6A163 491 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 DPF3Q92784 378 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 DDX50Q9BQ39 737 aaKnown RBP13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 TSEN34Q9BSV6 310 aaKnown RBP13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 TRIM62Q9BVG3 475 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 SCUBE2Q9NQ36 999 aa13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 ZMYND8Q9ULU4 1186 aaPredicted RBP13.95□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 NBPF26B4DH59 902 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 TXNP10599 105 aaKnown RBP13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 SULT1E1P49888 294 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 TMC4Q7Z404 712 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 LEMD2Q8NC56 503 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 ZNF564Q8TBZ8 553 aaPredicted RBP13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 TARSL2A2RTX5 802 aaKnown RBP13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 PEX1O43933 1283 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 ALDH6A1Q02252 535 aaKnown RBP13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 KCNH2Q12809 1159 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 TFDP2Q14188 446 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 RASSF10A6NK89 507 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 POLRMTO00411 1230 aaKnown RBP13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 PLIN5Q00G26 463 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 LRRC63Q05C16 580 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 C11orf88Q6PI97 169 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 FAM167BQ9BTA0 163 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 OXCT2Q9BYC2 517 aaPredicted RBP13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 IL1RL2Q9HB29 575 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 RHOT2Q8IXI1 618 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 KRT78Q8N1N4 520 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 POMGNT2Q8NAT1 580 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 ICA1LQ8NDH6 482 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 C1orf54Q8WWF1 131 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 BFARQ9NZS9 450 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 RRP15Q9Y3B9 282 aaKnown RBP13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 SDK1Q7Z5N4 2213 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 CCDC151A5D8V7 595 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 PODXLO00592 558 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 HPCAP84074 193 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 ALCAMQ13740 583 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 BTNL9Q6UXG8 535 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 KIAA2013Q8IYS2 634 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 LXNQ9BS40 222 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 ZNF335Q9H4Z2 1342 aaPredicted RBP13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 DYNC1LI2O43237 492 aaPredicted RBP13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 TRAPPC3O43617 180 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 ERAP2Q6P179 960 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 CHSY1Q86X52 802 aa13.94□□□□□ -0.18
NPHP3-ACAD11-201ENST00000471702 SLC25A41Q8N5S1 370 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms