RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 SEMA4AQ9H3S1 761 aa20.47■□□□□ 0.87
VIM-203ENST00000469543 ADAMTS5Q9UNA0 930 aa20.47■□□□□ 0.87
VIM-203ENST00000469543 TLDC2A0PJX2 215 aa20.47■□□□□ 0.87
VIM-203ENST00000469543 SPDYE16A6NNV3 312 aaPredicted RBP20.47■□□□□ 0.87
VIM-203ENST00000469543 MAGOHP61326 146 aaKnown RBP20.47■□□□□ 0.87
VIM-203ENST00000469543 SF3A3Q12874 501 aaKnown RBP eCLIP20.47■□□□□ 0.87
VIM-203ENST00000469543 BIRC3Q13489 604 aa20.47■□□□□ 0.87
VIM-203ENST00000469543 BRDTQ58F21 947 aaPredicted RBP20.47■□□□□ 0.87
VIM-203ENST00000469543 TDRD10Q5VZ19 366 aaKnown RBP20.47■□□□□ 0.87
VIM-203ENST00000469543 CATSPERGQ6ZRH7 1159 aa20.47■□□□□ 0.87
VIM-203ENST00000469543 CCDC105Q8IYK2 499 aa20.47■□□□□ 0.87
VIM-203ENST00000469543 CYFIP2Q96F07 1278 aa20.47■□□□□ 0.87
VIM-203ENST00000469543 TARS2Q9BW92 718 aaKnown RBP20.47■□□□□ 0.87
VIM-203ENST00000469543 ATP6V0A4Q9HBG4 840 aa20.47■□□□□ 0.87
VIM-203ENST00000469543 FAM114A2Q9NRY5 505 aa20.47■□□□□ 0.87
VIM-203ENST00000469543 GRHL1Q9NZI5 618 aa20.47■□□□□ 0.87
VIM-203ENST00000469543 ARHGAP28Q9P2N2 729 aa20.47■□□□□ 0.87
VIM-203ENST00000469543 ANAPC7Q9UJX3 599 aa20.47■□□□□ 0.87
VIM-203ENST00000469543 RLFQ13129 1914 aa20.47■□□□□ 0.87
VIM-203ENST00000469543 CEP350Q5VT06 3117 aa20.46■□□□□ 0.87
VIM-203ENST00000469543 HMGB1P1B2RPK0 211 aaPredicted RBP20.46■□□□□ 0.87
VIM-203ENST00000469543 EBAG9O00559 213 aa20.46■□□□□ 0.87
VIM-203ENST00000469543 CYP1A2P05177 515 aa20.46■□□□□ 0.87
VIM-203ENST00000469543 TREML2Q5T2D2 321 aa20.46■□□□□ 0.87
VIM-203ENST00000469543 CRELD2Q6UXH1 353 aaPredicted RBP20.46■□□□□ 0.87
VIM-203ENST00000469543 SAMD3Q8N6K7 520 aa20.46■□□□□ 0.87
VIM-203ENST00000469543 RNF25Q96BH1 459 aaPredicted RBP20.46■□□□□ 0.87
VIM-203ENST00000469543 KLRG1Q96E93 195 aa20.46■□□□□ 0.87
VIM-203ENST00000469543 GGA3Q9NZ52 723 aa20.46■□□□□ 0.87
VIM-203ENST00000469543 UMODL1Q5DID0 1318 aa20.46■□□□□ 0.87
VIM-203ENST00000469543 SPATA31C2B4DYI2 1134 aa20.46■□□□□ 0.87
VIM-203ENST00000469543 CAND2O75155 1236 aa20.46■□□□□ 0.87
VIM-203ENST00000469543 HIRAP54198 1017 aaPredicted RBP20.46■□□□□ 0.87
VIM-203ENST00000469543 EMC2Q15006 297 aa20.46■□□□□ 0.87
VIM-203ENST00000469543 ACAD10Q6JQN1 1059 aa20.46■□□□□ 0.87
VIM-203ENST00000469543 EIF1ADQ8N9N8 165 aaKnown RBP20.46■□□□□ 0.87
VIM-203ENST00000469543 SENP7Q9BQF6 1050 aa20.46■□□□□ 0.87
VIM-203ENST00000469543 RAB17Q9H0T7 212 aa20.46■□□□□ 0.87
VIM-203ENST00000469543 ACAD9Q9H845 621 aa20.46■□□□□ 0.87
VIM-203ENST00000469543 FBXO40Q9UH90 709 aa20.46■□□□□ 0.87
VIM-203ENST00000469543 ZNF112Q9UJU3 913 aa20.46■□□□□ 0.87
VIM-203ENST00000469543 PHF2O75151 1096 aa20.45■□□□□ 0.86
VIM-203ENST00000469543 SCP2P22307 547 aa20.45■□□□□ 0.86
VIM-203ENST00000469543 FGFR4P22455 802 aa20.45■□□□□ 0.86
VIM-203ENST00000469543 SLC29A2Q14542 456 aa20.45■□□□□ 0.86
VIM-203ENST00000469543 SIX1Q15475 284 aaPredicted RBP20.45■□□□□ 0.86
VIM-203ENST00000469543 TRIP13Q15645 432 aaPredicted RBP20.45■□□□□ 0.86
VIM-203ENST00000469543 SLC13A5Q86YT5 568 aaPredicted RBP20.45■□□□□ 0.86
VIM-203ENST00000469543 TMC2Q8TDI7 906 aa20.45■□□□□ 0.86
VIM-203ENST00000469543 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP20.45■□□□□ 0.86
VIM-203ENST00000469543 IFT74Q96LB3 600 aa20.45■□□□□ 0.86
VIM-203ENST00000469543 RPS6KC1Q96S38 1066 aa20.45■□□□□ 0.86
VIM-203ENST00000469543 NAP1L3Q99457 506 aaPredicted RBP20.45■□□□□ 0.86
VIM-203ENST00000469543 DIS3Q9Y2L1 958 aaKnown RBP20.45■□□□□ 0.86
VIM-203ENST00000469543 PCDHA3Q9Y5H8 950 aa20.45■□□□□ 0.86
VIM-203ENST00000469543 FAM169AQ9Y6X4 670 aa20.45■□□□□ 0.86
VIM-203ENST00000469543 SYNGAP1Q96PV0 1343 aa20.45■□□□□ 0.86
VIM-203ENST00000469543 MIF4GDA9UHW6 222 aaKnown RBP20.45■□□□□ 0.86
VIM-203ENST00000469543 E7EVH7 732 aa20.45■□□□□ 0.86
VIM-203ENST00000469543 PMM2O15305 246 aa20.45■□□□□ 0.86
VIM-203ENST00000469543 GLRA2P23416 452 aa20.45■□□□□ 0.86
VIM-203ENST00000469543 CTNNA2P26232 953 aa20.45■□□□□ 0.86
VIM-203ENST00000469543 SLCO1A2P46721 670 aa20.45■□□□□ 0.86
VIM-203ENST00000469543 SNRPFP62306 86 aaKnown RBP20.45■□□□□ 0.86
VIM-203ENST00000469543 IFFO1Q0D2I5 559 aa20.45■□□□□ 0.86
VIM-203ENST00000469543 DCAF15Q66K64 600 aa20.45■□□□□ 0.86
VIM-203ENST00000469543 HEMGNQ9BXL5 484 aa20.45■□□□□ 0.86
VIM-203ENST00000469543 TXLNGYQ9BZA5 131 aa20.45■□□□□ 0.86
VIM-203ENST00000469543 APOBEC3GQ9HC16 384 aaKnown RBP20.45■□□□□ 0.86
VIM-203ENST00000469543 GTF3C4Q9UKN8 822 aa20.45■□□□□ 0.86
VIM-203ENST00000469543 MAFGO15525 162 aa20.44■□□□□ 0.86
VIM-203ENST00000469543 VNN1O95497 513 aa20.44■□□□□ 0.86
VIM-203ENST00000469543 RPS12P25398 132 aaKnown RBP20.44■□□□□ 0.86
VIM-203ENST00000469543 ANKRD35Q8N283 1001 aa20.44■□□□□ 0.86
VIM-203ENST00000469543 OR5B17Q8NGF7 314 aa20.44■□□□□ 0.86
VIM-203ENST00000469543 FNBP1Q96RU3 617 aa20.44■□□□□ 0.86
VIM-203ENST00000469543 AS3MTQ9HBK9 375 aa20.44■□□□□ 0.86
VIM-203ENST00000469543 AGO2Q9UKV8 859 aaKnown RBP20.44■□□□□ 0.86
VIM-203ENST00000469543 PPFIA2O75334 1257 aa20.44■□□□□ 0.86
VIM-203ENST00000469543 HLA-DRAP01903 254 aa20.44■□□□□ 0.86
VIM-203ENST00000469543 CORO7P57737 925 aa20.44■□□□□ 0.86
VIM-203ENST00000469543 PTGISQ16647 500 aa20.44■□□□□ 0.86
VIM-203ENST00000469543 CLEC16AQ2KHT3 1053 aa20.44■□□□□ 0.86
VIM-203ENST00000469543 SEL1L2Q5TEA6 688 aa20.44■□□□□ 0.86
VIM-203ENST00000469543 LRIG3Q6UXM1 1119 aa20.44■□□□□ 0.86
VIM-203ENST00000469543 MCPH1Q8NEM0 835 aa20.44■□□□□ 0.86
VIM-203ENST00000469543 ZBTB10Q96DT7 871 aa20.44■□□□□ 0.86
VIM-203ENST00000469543 DNAJC17Q9NVM6 304 aaKnown RBP20.44■□□□□ 0.86
VIM-203ENST00000469543 MYH9P35579 1960 aaKnown RBP20.44■□□□□ 0.86
VIM-203ENST00000469543 FZD9O00144 591 aa20.43■□□□□ 0.86
VIM-203ENST00000469543 SUPT20HL2P0C7V6 817 aa20.43■□□□□ 0.86
VIM-203ENST00000469543 UNGP13051 313 aaPredicted RBP20.43■□□□□ 0.86
VIM-203ENST00000469543 SUPT20HL1Q3ZLR7 823 aa20.43■□□□□ 0.86
VIM-203ENST00000469543 CCDC25Q86WR0 208 aa20.43■□□□□ 0.86
VIM-203ENST00000469543 TMEM130Q8N3G9 435 aa20.43■□□□□ 0.86
VIM-203ENST00000469543 CCT8L2Q96SF2 557 aa20.43■□□□□ 0.86
VIM-203ENST00000469543 WNT8AQ9H1J5 351 aa20.43■□□□□ 0.86
VIM-203ENST00000469543 EPN3Q9H201 632 aa20.43■□□□□ 0.86
VIM-203ENST00000469543 RASSF4Q9H2L5 321 aa20.43■□□□□ 0.86
VIM-203ENST00000469543 CHST7Q9NS84 486 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms