RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 OR2I1PQ8NGU4 316 aa5.96□□□□□ -1.46
HMGB1-207ENST00000468384 ZNF707Q96C28 371 aaPredicted RBP5.96□□□□□ -1.46
HMGB1-207ENST00000468384 ZNF558Q96NG5 402 aa5.96□□□□□ -1.46
HMGB1-207ENST00000468384 RAVER2Q9HCJ3 691 aaKnown RBP5.96□□□□□ -1.46
HMGB1-207ENST00000468384 HOMER2Q9NSB8 354 aa5.96□□□□□ -1.46
HMGB1-207ENST00000468384 DONSONQ9NYP3 566 aa5.96□□□□□ -1.46
HMGB1-207ENST00000468384 TMX2Q9Y320 296 aa5.96□□□□□ -1.46
HMGB1-207ENST00000468384 MN1Q10571 1320 aaPredicted RBP5.96□□□□□ -1.46
HMGB1-207ENST00000468384 LOXHD1Q8IVV2 1947 aa5.95□□□□□ -1.46
HMGB1-207ENST00000468384 NSD1Q96L73 2696 aaPredicted RBP5.95□□□□□ -1.46
HMGB1-207ENST00000468384 RFPL2O75678 378 aa5.95□□□□□ -1.46
HMGB1-207ENST00000468384 RECKO95980 971 aa5.95□□□□□ -1.46
HMGB1-207ENST00000468384 F2P00734 622 aa5.95□□□□□ -1.46
HMGB1-207ENST00000468384 LDHCP07864 332 aa5.95□□□□□ -1.46
HMGB1-207ENST00000468384 SCTRP47872 440 aa5.95□□□□□ -1.46
HMGB1-207ENST00000468384 GIT2Q14161 759 aa5.95□□□□□ -1.46
HMGB1-207ENST00000468384 SKIDA1Q1XH10 827 aa5.95□□□□□ -1.46
HMGB1-207ENST00000468384 ZXDCQ2QGD7 858 aaPredicted RBP5.95□□□□□ -1.46
HMGB1-207ENST00000468384 LRRC24Q50LG9 513 aa5.95□□□□□ -1.46
HMGB1-207ENST00000468384 WDR44Q5JSH3 913 aa5.95□□□□□ -1.46
HMGB1-207ENST00000468384 FAM102BQ5T8I3 360 aa5.95□□□□□ -1.46
HMGB1-207ENST00000468384 SIAH1Q8IUQ4 282 aa5.95□□□□□ -1.46
HMGB1-207ENST00000468384 VPS52Q8N1B4 723 aa5.95□□□□□ -1.46
HMGB1-207ENST00000468384 ZNF248Q8NDW4 579 aa5.95□□□□□ -1.46
HMGB1-207ENST00000468384 SEMA3CQ99985 751 aa5.95□□□□□ -1.46
HMGB1-207ENST00000468384 ZBP1Q9H171 429 aa5.95□□□□□ -1.46
HMGB1-207ENST00000468384 ACAD9Q9H845 621 aa5.95□□□□□ -1.46
HMGB1-207ENST00000468384 PIDD1Q9HB75 910 aa5.95□□□□□ -1.46
HMGB1-207ENST00000468384 MAN1C1Q9NR34 630 aa5.95□□□□□ -1.46
HMGB1-207ENST00000468384 GNL3LQ9NVN8 582 aaKnown RBP5.95□□□□□ -1.46
HMGB1-207ENST00000468384 ZNF358Q9NW07 568 aa5.95□□□□□ -1.46
HMGB1-207ENST00000468384 PLAAQ9Y263 795 aa5.95□□□□□ -1.46
HMGB1-207ENST00000468384 NUDCQ9Y266 331 aa5.95□□□□□ -1.46
HMGB1-207ENST00000468384 PIAS3Q9Y6X2 628 aa5.95□□□□□ -1.46
HMGB1-207ENST00000468384 MAP1AP78559 2803 aaPredicted RBP5.95□□□□□ -1.46
HMGB1-207ENST00000468384 UBE4BO95155 1302 aa5.95□□□□□ -1.46
HMGB1-207ENST00000468384 MYO16Q9Y6X6 1858 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 DLG5Q8TDM6 1919 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 ANO9A1A5B4 782 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 FAM229AH3BQW9 127 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 K7ENP7 123 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 MPHOSPH10O00566 681 aaKnown RBP5.94□□□□□ -1.46
HMGB1-207ENST00000468384 BRINP1O60477 761 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 ZBED4O75132 1171 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 CFIP05156 583 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 ZNF286BP0CG31 522 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 TXNP10599 105 aaKnown RBP5.94□□□□□ -1.46
HMGB1-207ENST00000468384 SFTPCP11686 197 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 IBSPP21815 317 aaPredicted RBP5.94□□□□□ -1.46
HMGB1-207ENST00000468384 CCNE1P24864 410 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 KLRC2P26717 231 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 SHMT1P34896 483 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 PI4KAP42356 2102 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 DHPSP49366 369 aaPredicted RBP5.94□□□□□ -1.46
HMGB1-207ENST00000468384 RAB15P59190 212 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 GSTO1P78417 241 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 GFPT1Q06210 699 aaPredicted RBP5.94□□□□□ -1.46
HMGB1-207ENST00000468384 DGKDQ16760 1214 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 TBC1D25Q3MII6 688 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 DGKKQ5KSL6 1271 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 FAM83BQ5T0W9 1011 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 FHL5Q5TD97 284 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 INO80CQ6PI98 192 aaPredicted RBP5.94□□□□□ -1.46
HMGB1-207ENST00000468384 ZNF280BQ86YH2 543 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 SCFD2Q8WU76 684 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 FAM20AQ96MK3 541 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 SLF1Q9BQI6 1058 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 NRSN2Q9GZP1 204 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 TMEM74BQ9NUR3 256 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 SERPINB13Q9UIV8 391 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 PCOLCE2Q9UKZ9 415 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 EML5Q05BV3 1969 aa5.94□□□□□ -1.46
HMGB1-207ENST00000468384 CUBNO60494 3623 aa5.93□□□□□ -1.46
HMGB1-207ENST00000468384 C17orf102A2RUQ5 167 aa5.93□□□□□ -1.46
HMGB1-207ENST00000468384 TMEM200CA6NKL6 621 aa5.93□□□□□ -1.46
HMGB1-207ENST00000468384 TMEM229AB2RXF0 380 aa5.93□□□□□ -1.46
HMGB1-207ENST00000468384 GJB3O75712 270 aa5.93□□□□□ -1.46
HMGB1-207ENST00000468384 THBS1P07996 1170 aa5.93□□□□□ -1.46
HMGB1-207ENST00000468384 CTSAP10619 480 aa5.93□□□□□ -1.46
HMGB1-207ENST00000468384 PHKA1P46020 1223 aa5.93□□□□□ -1.46
HMGB1-207ENST00000468384 RNASELQ05823 741 aaKnown RBP5.93□□□□□ -1.46
HMGB1-207ENST00000468384 G3BP1Q13283 466 aaKnown RBP eCLIP5.93□□□□□ -1.46
HMGB1-207ENST00000468384 DUSP27Q5VZP5 1158 aa5.93□□□□□ -1.46
HMGB1-207ENST00000468384 TMPRSS12Q86WS5 348 aa5.93□□□□□ -1.46
HMGB1-207ENST00000468384 SYT12Q8IV01 421 aa5.93□□□□□ -1.46
HMGB1-207ENST00000468384 RGL4Q8IZJ4 473 aa5.93□□□□□ -1.46
HMGB1-207ENST00000468384 SLC34A3Q8N130 599 aa5.93□□□□□ -1.46
HMGB1-207ENST00000468384 SLC39A11Q8N1S5 342 aa5.93□□□□□ -1.46
HMGB1-207ENST00000468384 HELQQ8TDG4 1101 aa5.93□□□□□ -1.46
HMGB1-207ENST00000468384 FGF13Q92913 245 aa5.93□□□□□ -1.46
HMGB1-207ENST00000468384 FTHL17Q9BXU8 183 aa5.93□□□□□ -1.46
HMGB1-207ENST00000468384 PLA2G2FQ9BZM2 168 aa5.93□□□□□ -1.46
HMGB1-207ENST00000468384 EHD4Q9H223 541 aa5.93□□□□□ -1.46
HMGB1-207ENST00000468384 MYH16Q9H6N6 1097 aa5.93□□□□□ -1.46
HMGB1-207ENST00000468384 SH2D4AQ9H788 454 aa5.93□□□□□ -1.46
HMGB1-207ENST00000468384 ARHGEF10LQ9HCE6 1279 aa5.93□□□□□ -1.46
HMGB1-207ENST00000468384 PGPEP1Q9NXJ5 209 aa5.93□□□□□ -1.46
HMGB1-207ENST00000468384 SLC6A14Q9UN76 642 aa5.93□□□□□ -1.46
HMGB1-207ENST00000468384 SLC8A2Q9UPR5 921 aa5.93□□□□□ -1.46
HMGB1-207ENST00000468384 CTDP1Q9Y5B0 961 aaPredicted RBP5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms