RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 ACKR2O00590 384 aa22.72■■□□□ 1.23
COL6A1-203ENST00000466285 MEFVO15553 781 aaPredicted RBP22.72■■□□□ 1.23
COL6A1-203ENST00000466285 NUBP1P53384 320 aa22.72■■□□□ 1.23
COL6A1-203ENST00000466285 SOX4Q06945 474 aaPredicted RBP22.72■■□□□ 1.23
COL6A1-203ENST00000466285 IL17AQ16552 155 aa22.72■■□□□ 1.23
COL6A1-203ENST00000466285 MAPK6Q16659 721 aa22.72■■□□□ 1.23
COL6A1-203ENST00000466285 TMEM132AQ24JP5 1023 aa22.72■■□□□ 1.23
COL6A1-203ENST00000466285 TAS1R3Q7RTX0 852 aa22.72■■□□□ 1.23
COL6A1-203ENST00000466285 GRASPQ7Z6J2 395 aaPredicted RBP22.72■■□□□ 1.23
COL6A1-203ENST00000466285 FBXO18Q8NFZ0 1043 aa22.72■■□□□ 1.23
COL6A1-203ENST00000466285 DEPTORQ8TB45 409 aa22.72■■□□□ 1.23
COL6A1-203ENST00000466285 TTPALQ9BTX7 342 aa22.72■■□□□ 1.23
COL6A1-203ENST00000466285 C2orf40Q9H1Z8 148 aa22.72■■□□□ 1.23
COL6A1-203ENST00000466285 FOXP1Q9H334 677 aaPredicted RBP22.72■■□□□ 1.23
COL6A1-203ENST00000466285 PLEKHA4Q9H4M7 779 aa22.72■■□□□ 1.23
COL6A1-203ENST00000466285 LIMCH1Q9UPQ0 1083 aa22.72■■□□□ 1.23
COL6A1-203ENST00000466285 NUMBLQ9Y6R0 609 aa22.72■■□□□ 1.23
COL6A1-203ENST00000466285 GVINP1Q7Z2Y8 2422 aa22.71■■□□□ 1.23
COL6A1-203ENST00000466285 MIA3Q5JRA6 1907 aa22.71■■□□□ 1.23
COL6A1-203ENST00000466285 CCL16O15467 120 aa22.71■■□□□ 1.23
COL6A1-203ENST00000466285 LAMP2P13473 410 aa22.71■■□□□ 1.23
COL6A1-203ENST00000466285 CCT6AP40227 531 aaKnown RBP22.71■■□□□ 1.23
COL6A1-203ENST00000466285 SAFBQ15424 915 aaKnown RBP eCLIP22.71■■□□□ 1.23
COL6A1-203ENST00000466285 POTEHQ6S545 545 aa22.71■■□□□ 1.23
COL6A1-203ENST00000466285 KCNK18Q7Z418 384 aa22.71■■□□□ 1.23
COL6A1-203ENST00000466285 HDAC7Q8WUI4 952 aa22.71■■□□□ 1.23
COL6A1-203ENST00000466285 STAMQ92783 540 aa22.71■■□□□ 1.23
COL6A1-203ENST00000466285 PPP1R10Q96QC0 940 aaKnown RBP22.71■■□□□ 1.23
COL6A1-203ENST00000466285 HCFC1R1Q9NWW0 138 aa22.71■■□□□ 1.23
COL6A1-203ENST00000466285 PCDHB6Q9Y5E3 794 aa22.71■■□□□ 1.23
COL6A1-203ENST00000466285 PATJQ8NI35 1801 aa22.71■■□□□ 1.23
COL6A1-203ENST00000466285 MYH11P35749 1972 aa22.7■■□□□ 1.23
COL6A1-203ENST00000466285 ANHXE9PGG2 379 aa22.7■■□□□ 1.22
COL6A1-203ENST00000466285 E9PMD0 336 aa22.7■■□□□ 1.22
COL6A1-203ENST00000466285 THP07101 528 aa22.7■■□□□ 1.22
COL6A1-203ENST00000466285 C8AP07357 584 aa22.7■■□□□ 1.22
COL6A1-203ENST00000466285 CDC25AP30304 524 aa22.7■■□□□ 1.22
COL6A1-203ENST00000466285 FXR2P51116 673 aaKnown RBP eCLIP22.7■■□□□ 1.22
COL6A1-203ENST00000466285 CYP26C1Q6V0L0 522 aa22.7■■□□□ 1.22
COL6A1-203ENST00000466285 GPR65Q8IYL9 337 aa22.7■■□□□ 1.22
COL6A1-203ENST00000466285 DTWD2Q8NBA8 298 aa22.7■■□□□ 1.22
COL6A1-203ENST00000466285 FGF14Q92915 247 aa22.7■■□□□ 1.22
COL6A1-203ENST00000466285 RUSC1Q9BVN2 902 aa22.7■■□□□ 1.22
COL6A1-203ENST00000466285 DDX19AQ9NUU7 478 aaKnown RBP22.7■■□□□ 1.22
COL6A1-203ENST00000466285 KIAA1024Q9UPX6 916 aa22.7■■□□□ 1.22
COL6A1-203ENST00000466285 PTPRZ1P23471 2315 aaPredicted RBP22.69■■□□□ 1.22
COL6A1-203ENST00000466285 FANCMQ8IYD8 2048 aa22.69■■□□□ 1.22
COL6A1-203ENST00000466285 LRRN2O75325 713 aa22.69■■□□□ 1.22
COL6A1-203ENST00000466285 SRFP11831 508 aa22.69■■□□□ 1.22
COL6A1-203ENST00000466285 TKTP29401 623 aaKnown RBP22.69■■□□□ 1.22
COL6A1-203ENST00000466285 BRCC3P46736 316 aa22.69■■□□□ 1.22
COL6A1-203ENST00000466285 CLCNKBP51801 687 aa22.69■■□□□ 1.22
COL6A1-203ENST00000466285 MAPK7Q13164 816 aa22.69■■□□□ 1.22
COL6A1-203ENST00000466285 ANGPT1Q15389 498 aa22.69■■□□□ 1.22
COL6A1-203ENST00000466285 ATF7IP2Q5U623 682 aa22.69■■□□□ 1.22
COL6A1-203ENST00000466285 PARM1Q6UWI2 310 aa22.69■■□□□ 1.22
COL6A1-203ENST00000466285 ERMNQ8TAM6 284 aa22.69■■□□□ 1.22
COL6A1-203ENST00000466285 ITFG1Q8TB96 612 aa22.69■■□□□ 1.22
COL6A1-203ENST00000466285 CDT1Q9H211 546 aa22.69■■□□□ 1.22
COL6A1-203ENST00000466285 TBC1D17Q9HA65 648 aa22.69■■□□□ 1.22
COL6A1-203ENST00000466285 NRG2O14511 850 aaPredicted RBP22.68■■□□□ 1.22
COL6A1-203ENST00000466285 FSHRP23945 695 aa22.68■■□□□ 1.22
COL6A1-203ENST00000466285 SLC7A14Q8TBB6 771 aa22.68■■□□□ 1.22
COL6A1-203ENST00000466285 SNX29Q8TEQ0 813 aa22.68■■□□□ 1.22
COL6A1-203ENST00000466285 DDX27Q96GQ7 796 aaKnown RBP22.68■■□□□ 1.22
COL6A1-203ENST00000466285 LLPHQ9BRT6 129 aaKnown RBP22.68■■□□□ 1.22
COL6A1-203ENST00000466285 MMTAG2Q9BU76 263 aaKnown RBP22.68■■□□□ 1.22
COL6A1-203ENST00000466285 LRWD1Q9UFC0 647 aa22.68■■□□□ 1.22
COL6A1-203ENST00000466285 DPP7Q9UHL4 492 aa22.68■■□□□ 1.22
COL6A1-203ENST00000466285 DMXL1Q9Y485 3027 aa22.67■■□□□ 1.22
COL6A1-203ENST00000466285 ABLIM1O14639 778 aa22.67■■□□□ 1.22
COL6A1-203ENST00000466285 FGFR3P22607 806 aa22.67■■□□□ 1.22
COL6A1-203ENST00000466285 OSTNP61366 133 aa22.67■■□□□ 1.22
COL6A1-203ENST00000466285 ORC2Q13416 577 aaPredicted RBP22.67■■□□□ 1.22
COL6A1-203ENST00000466285 DCAF4L1Q3SXM0 396 aa22.67■■□□□ 1.22
COL6A1-203ENST00000466285 HAUS3Q68CZ6 603 aa22.67■■□□□ 1.22
COL6A1-203ENST00000466285 ELMSAN1Q6PJG2 1045 aa22.67■■□□□ 1.22
COL6A1-203ENST00000466285 IGSF22Q8N9C0 903 aa22.67■■□□□ 1.22
COL6A1-203ENST00000466285 ZMAT2Q96NC0 199 aaKnown RBP22.67■■□□□ 1.22
COL6A1-203ENST00000466285 ADPGKQ9BRR6 497 aa22.67■■□□□ 1.22
COL6A1-203ENST00000466285 FOXQ1Q9C009 403 aa22.67■■□□□ 1.22
COL6A1-203ENST00000466285 IRF2BPLQ9H1B7 796 aa22.67■■□□□ 1.22
COL6A1-203ENST00000466285 WNT16Q9UBV4 365 aa22.67■■□□□ 1.22
COL6A1-203ENST00000466285 FRYLO94915 3013 aa22.66■■□□□ 1.22
COL6A1-203ENST00000466285 COL4A2P08572 1712 aa22.66■■□□□ 1.22
COL6A1-203ENST00000466285 HIP1RO75146 1068 aa22.66■■□□□ 1.22
COL6A1-203ENST00000466285 DCNP07585 359 aaKnown RBP22.66■■□□□ 1.22
COL6A1-203ENST00000466285 GLULP15104 373 aa22.66■■□□□ 1.22
COL6A1-203ENST00000466285 OR1D2P34982 312 aa22.66■■□□□ 1.22
COL6A1-203ENST00000466285 NPTX2P47972 431 aa22.66■■□□□ 1.22
COL6A1-203ENST00000466285 PEX3P56589 373 aa22.66■■□□□ 1.22
COL6A1-203ENST00000466285 CREMQ03060 361 aa22.66■■□□□ 1.22
COL6A1-203ENST00000466285 PTGDRQ13258 359 aa22.66■■□□□ 1.22
COL6A1-203ENST00000466285 SPECC1Q5M775 1068 aa22.66■■□□□ 1.22
COL6A1-203ENST00000466285 PPM1LQ5SGD2 360 aa22.66■■□□□ 1.22
COL6A1-203ENST00000466285 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.66■■□□□ 1.22
COL6A1-203ENST00000466285 ING5Q8WYH8 240 aa22.66■■□□□ 1.22
COL6A1-203ENST00000466285 ARHGEF3Q9NR81 526 aa22.66■■□□□ 1.22
COL6A1-203ENST00000466285 DLGAP2Q9P1A6 1054 aa22.66■■□□□ 1.22
COL6A1-203ENST00000466285 MTRRQ9UBK8 725 aa22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms