RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 KLHL8Q9P2G9 620 aaPredicted RBP20.1■□□□□ 0.81
CCDC88B-204ENST00000463837 SPAG6O75602 509 aa20.1■□□□□ 0.81
CCDC88B-204ENST00000463837 KLRC1P26715 233 aa20.1■□□□□ 0.81
CCDC88B-204ENST00000463837 SDC4P31431 198 aa20.1■□□□□ 0.81
CCDC88B-204ENST00000463837 PSMC1P62191 440 aaKnown RBP20.1■□□□□ 0.81
CCDC88B-204ENST00000463837 KIF19Q2TAC6 998 aa20.1■□□□□ 0.81
CCDC88B-204ENST00000463837 NOD2Q9HC29 1040 aa20.1■□□□□ 0.81
CCDC88B-204ENST00000463837 ERFP50548 548 aa20.09■□□□□ 0.81
CCDC88B-204ENST00000463837 SNRPFP62306 86 aaKnown RBP20.09■□□□□ 0.81
CCDC88B-204ENST00000463837 RASSF3Q86WH2 238 aa20.09■□□□□ 0.81
CCDC88B-204ENST00000463837 HAUS6Q7Z4H7 955 aa20.09■□□□□ 0.81
CCDC88B-204ENST00000463837 EPB41L4AQ9HCS5 686 aaPredicted RBP20.09■□□□□ 0.81
CCDC88B-204ENST00000463837 ALG13Q9NP73 1137 aaKnown RBP20.09■□□□□ 0.81
CCDC88B-204ENST00000463837 L3MBTL1Q9Y468 752 aa20.09■□□□□ 0.81
CCDC88B-204ENST00000463837 ENO4A6NNW6 628 aa20.09■□□□□ 0.81
CCDC88B-204ENST00000463837 CYP26A1O43174 497 aa20.09■□□□□ 0.81
CCDC88B-204ENST00000463837 CRKP46108 304 aa20.09■□□□□ 0.81
CCDC88B-204ENST00000463837 BCAR1P56945 870 aa20.09■□□□□ 0.81
CCDC88B-204ENST00000463837 MAPK6Q16659 721 aa20.09■□□□□ 0.81
CCDC88B-204ENST00000463837 CDKAL1Q5VV42 579 aa20.09■□□□□ 0.81
CCDC88B-204ENST00000463837 C16orf87Q6PH81 154 aa20.09■□□□□ 0.81
CCDC88B-204ENST00000463837 ERP27Q96DN0 273 aa20.09■□□□□ 0.81
CCDC88B-204ENST00000463837 GPR101Q96P66 508 aaPredicted RBP20.09■□□□□ 0.81
CCDC88B-204ENST00000463837 SUGT1Q9Y2Z0 365 aa20.09■□□□□ 0.81
CCDC88B-204ENST00000463837 GPC3P51654 580 aa20.09■□□□□ 0.81
CCDC88B-204ENST00000463837 KCNQ4P56696 695 aa20.09■□□□□ 0.81
CCDC88B-204ENST00000463837 MED21Q13503 144 aa20.09■□□□□ 0.81
CCDC88B-204ENST00000463837 CRYMQ14894 314 aa20.09■□□□□ 0.81
CCDC88B-204ENST00000463837 HEATR6Q6AI08 1181 aaKnown RBP20.09■□□□□ 0.81
CCDC88B-204ENST00000463837 CASKIN2Q8WXE0 1202 aa20.09■□□□□ 0.81
CCDC88B-204ENST00000463837 ZBTB18Q99592 522 aa20.09■□□□□ 0.81
CCDC88B-204ENST00000463837 TMBIM4Q9HC24 238 aa20.09■□□□□ 0.81
CCDC88B-204ENST00000463837 DBR1Q9UK59 544 aaKnown RBP20.09■□□□□ 0.81
CCDC88B-204ENST00000463837 HEY1Q9Y5J3 304 aa20.09■□□□□ 0.81
CCDC88B-204ENST00000463837 SLC4A1P02730 911 aa20.08■□□□□ 0.81
CCDC88B-204ENST00000463837 FNTAP49354 379 aa20.08■□□□□ 0.81
CCDC88B-204ENST00000463837 KLHDC7AQ5VTJ3 777 aa20.08■□□□□ 0.81
CCDC88B-204ENST00000463837 SLC13A1Q9BZW2 595 aa20.08■□□□□ 0.81
CCDC88B-204ENST00000463837 ABT1Q9ULW3 272 aaKnown RBP20.08■□□□□ 0.81
CCDC88B-204ENST00000463837 RC3H1Q5TC82 1133 aaKnown RBP20.08■□□□□ 0.81
CCDC88B-204ENST00000463837 LBHD1Q9BQE6 289 aaPredicted RBP20.08■□□□□ 0.81
CCDC88B-204ENST00000463837 PPME1Q9Y570 386 aa20.08■□□□□ 0.81
CCDC88B-204ENST00000463837 CEMIPQ8WUJ3 1361 aa20.08■□□□□ 0.8
CCDC88B-204ENST00000463837 EFTUD2Q15029 972 aaKnown RBP eCLIP20.08■□□□□ 0.86e-8■■■■□ 22.8
CCDC88B-204ENST00000463837 RHPN2Q8IUC4 686 aa20.08■□□□□ 0.8
CCDC88B-204ENST00000463837 FBXL16Q8N461 479 aa20.08■□□□□ 0.8
CCDC88B-204ENST00000463837 CELF1Q92879 486 aaKnown RBP20.08■□□□□ 0.8
CCDC88B-204ENST00000463837 MTRQ99707 1265 aa20.08■□□□□ 0.8
CCDC88B-204ENST00000463837 C2orf40Q9H1Z8 148 aa20.08■□□□□ 0.8
CCDC88B-204ENST00000463837 ANKZF1Q9H8Y5 726 aa20.08■□□□□ 0.8
CCDC88B-204ENST00000463837 P3H1Q32P28 736 aa20.08■□□□□ 0.8
CCDC88B-204ENST00000463837 KIAA1841Q6NSI8 718 aa20.08■□□□□ 0.8
CCDC88B-204ENST00000463837 DTX3LQ8TDB6 740 aa20.08■□□□□ 0.8
CCDC88B-204ENST00000463837 PABPC3Q9H361 631 aaKnown RBP20.08■□□□□ 0.8
CCDC88B-204ENST00000463837 SERPINB9P50453 376 aa20.07■□□□□ 0.8
CCDC88B-204ENST00000463837 WARS2Q9UGM6 360 aaKnown RBP20.07■□□□□ 0.8
CCDC88B-204ENST00000463837 H3BQF6 201 aa20.07■□□□□ 0.8
CCDC88B-204ENST00000463837 NPEPPSP55786 919 aa20.07■□□□□ 0.8
CCDC88B-204ENST00000463837 RMDN3Q96TC7 470 aa20.07■□□□□ 0.8
CCDC88B-204ENST00000463837 DNAJC6O75061 913 aa20.07■□□□□ 0.8
CCDC88B-204ENST00000463837 SRGAP2CP0DJJ0 459 aa20.07■□□□□ 0.8
CCDC88B-204ENST00000463837 EXT2Q93063 718 aa20.07■□□□□ 0.8
CCDC88B-204ENST00000463837 KDM4CQ9H3R0 1056 aa20.07■□□□□ 0.8
CCDC88B-204ENST00000463837 MRGBPQ9NV56 204 aa20.07■□□□□ 0.8
CCDC88B-204ENST00000463837 FBXO40Q9UH90 709 aa20.07■□□□□ 0.8
CCDC88B-204ENST00000463837 NEU2Q9Y3R4 380 aa20.07■□□□□ 0.8
CCDC88B-204ENST00000463837 IGF2BP3O00425 579 aaKnown RBP eCLIP20.07■□□□□ 0.8
CCDC88B-204ENST00000463837 KLK7P49862 253 aa20.07■□□□□ 0.8
CCDC88B-204ENST00000463837 REEP2Q9BRK0 252 aa20.07■□□□□ 0.8
CCDC88B-204ENST00000463837 SNX5Q9Y5X3 404 aa20.07■□□□□ 0.8
CCDC88B-204ENST00000463837 TSTA3Q13630 321 aaPredicted RBP20.06■□□□□ 0.8
CCDC88B-204ENST00000463837 TPCN2Q8NHX9 752 aa20.06■□□□□ 0.8
CCDC88B-204ENST00000463837 FNDC3AQ9Y2H6 1198 aaKnown RBP20.06■□□□□ 0.8
CCDC88B-204ENST00000463837 PPRC1Q5VV67 1664 aaKnown RBP20.06■□□□□ 0.8
CCDC88B-204ENST00000463837 NMT1P30419 496 aaKnown RBP20.06■□□□□ 0.8
CCDC88B-204ENST00000463837 ITPRIPL1Q6GPH6 555 aa20.06■□□□□ 0.8
CCDC88B-204ENST00000463837 BARGINQ6ZT62 677 aa20.06■□□□□ 0.8
CCDC88B-204ENST00000463837 PODNQ7Z5L7 613 aa20.06■□□□□ 0.8
CCDC88B-204ENST00000463837 KIRREL3Q8IZU9 778 aa20.06■□□□□ 0.8
CCDC88B-204ENST00000463837 ADAM33Q9BZ11 813 aa20.06■□□□□ 0.8
CCDC88B-204ENST00000463837 ING2Q9H160 280 aa20.06■□□□□ 0.8
CCDC88B-204ENST00000463837 BFARQ9NZS9 450 aa20.06■□□□□ 0.8
CCDC88B-204ENST00000463837 PCSK1NQ9UHG2 260 aa20.06■□□□□ 0.8
CCDC88B-204ENST00000463837 TFR2Q9UP52 801 aa20.06■□□□□ 0.8
CCDC88B-204ENST00000463837 F5H6K3 240 aa20.06■□□□□ 0.8
CCDC88B-204ENST00000463837 PIK3R2O00459 728 aa20.06■□□□□ 0.8
CCDC88B-204ENST00000463837 KLRC3Q07444 240 aa20.06■□□□□ 0.8
CCDC88B-204ENST00000463837 KCNK16Q96T55 309 aa20.06■□□□□ 0.8
CCDC88B-204ENST00000463837 SENP7Q9BQF6 1050 aa20.06■□□□□ 0.8
CCDC88B-204ENST00000463837 AGXT2Q9BYV1 514 aa20.06■□□□□ 0.8
CCDC88B-204ENST00000463837 CPSF3Q9UKF6 684 aaKnown RBP20.06■□□□□ 0.8
CCDC88B-204ENST00000463837 KCNA3P22001 575 aa20.06■□□□□ 0.8
CCDC88B-204ENST00000463837 GRIN1Q05586 938 aa20.06■□□□□ 0.8
CCDC88B-204ENST00000463837 RABGAP1LQ5R372 815 aa20.06■□□□□ 0.8
CCDC88B-204ENST00000463837 ELMSAN1Q6PJG2 1045 aa20.06■□□□□ 0.8
CCDC88B-204ENST00000463837 POTEAQ6S8J7 498 aa20.06■□□□□ 0.8
CCDC88B-204ENST00000463837 C2orf69Q8N8R5 385 aa20.06■□□□□ 0.8
CCDC88B-204ENST00000463837 GEMIN8Q9NWZ8 242 aaKnown RBP20.06■□□□□ 0.8
CCDC88B-204ENST00000463837 GTSE1Q9NYZ3 720 aa20.06■□□□□ 0.8
CCDC88B-204ENST00000463837 KLHL2O95198 593 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms