RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 FRMD5Q7Z6J6 570 aa16.94■□□□□ 0.3
SKA3-204ENST00000462482 FBXO18Q8NFZ0 1043 aa16.94■□□□□ 0.3
SKA3-204ENST00000462482 LNX1Q8TBB1 728 aaPredicted RBP16.94■□□□□ 0.3
SKA3-204ENST00000462482 BSNDQ8WZ55 320 aa16.94■□□□□ 0.3
SKA3-204ENST00000462482 UROC1Q96N76 676 aa16.94■□□□□ 0.3
SKA3-204ENST00000462482 CLSTN3Q9BQT9 956 aa16.94■□□□□ 0.3
SKA3-204ENST00000462482 CCDC113Q9H0I3 377 aa16.94■□□□□ 0.3
SKA3-204ENST00000462482 BHMT2Q9H2M3 363 aa16.94■□□□□ 0.3
SKA3-204ENST00000462482 TOPORSQ9NS56 1045 aaPredicted RBP16.94■□□□□ 0.3
SKA3-204ENST00000462482 CACNG4Q9UBN1 327 aa16.94■□□□□ 0.3
SKA3-204ENST00000462482 FBXW11Q9UKB1 542 aa16.94■□□□□ 0.3
SKA3-204ENST00000462482 PHLPP2Q6ZVD8 1323 aa16.94■□□□□ 0.3
SKA3-204ENST00000462482 CCDC169A6NNP5 214 aa16.93■□□□□ 0.3
SKA3-204ENST00000462482 B3GAT3O94766 335 aa16.93■□□□□ 0.3
SKA3-204ENST00000462482 HOXA9P31269 272 aa16.93■□□□□ 0.3
SKA3-204ENST00000462482 FXR2P51116 673 aaKnown RBP eCLIP16.93■□□□□ 0.3
SKA3-204ENST00000462482 DCLRE1AQ6PJP8 1040 aa16.93■□□□□ 0.3
SKA3-204ENST00000462482 ASCL5Q7RTU5 278 aa16.93■□□□□ 0.3
SKA3-204ENST00000462482 GRASPQ7Z6J2 395 aaPredicted RBP16.93■□□□□ 0.3
SKA3-204ENST00000462482 SHDQ96IW2 340 aa16.93■□□□□ 0.3
SKA3-204ENST00000462482 CCDC94Q9BW85 323 aaPredicted RBP16.93■□□□□ 0.3
SKA3-204ENST00000462482 TBC1D17Q9HA65 648 aa16.93■□□□□ 0.3
SKA3-204ENST00000462482 SH2B1Q9NRF2 756 aaPredicted RBP16.93■□□□□ 0.3
SKA3-204ENST00000462482 CDH7Q9ULB5 785 aa16.93■□□□□ 0.3
SKA3-204ENST00000462482 KIAA1024Q9UPX6 916 aa16.93■□□□□ 0.3
SKA3-204ENST00000462482 KMT2EQ8IZD2 1858 aa16.93■□□□□ 0.3
SKA3-204ENST00000462482 TTLL13PA6NNM8 815 aa16.92■□□□□ 0.3
SKA3-204ENST00000462482 HTR4Q13639 388 aa16.92■□□□□ 0.3
SKA3-204ENST00000462482 PDIA5Q14554 519 aa16.92■□□□□ 0.3
SKA3-204ENST00000462482 UVSSAQ2YD98 709 aa16.92■□□□□ 0.3
SKA3-204ENST00000462482 KRT79Q5XKE5 535 aa16.92■□□□□ 0.3
SKA3-204ENST00000462482 EEF1DP3Q658K8 133 aa16.92■□□□□ 0.3
SKA3-204ENST00000462482 MTSS1LQ765P7 747 aa16.92■□□□□ 0.3
SKA3-204ENST00000462482 GPR152Q8TDT2 470 aa16.92■□□□□ 0.3
SKA3-204ENST00000462482 SNX29Q8TEQ0 813 aa16.92■□□□□ 0.3
SKA3-204ENST00000462482 KIFC3Q9BVG8 833 aa16.92■□□□□ 0.3
SKA3-204ENST00000462482 ARHGEF3Q9NR81 526 aa16.92■□□□□ 0.3
SKA3-204ENST00000462482 DDX19AQ9NUU7 478 aaKnown RBP16.92■□□□□ 0.3
SKA3-204ENST00000462482 DNM3Q9UQ16 869 aa16.92■□□□□ 0.3
SKA3-204ENST00000462482 NUMBLQ9Y6R0 609 aa16.92■□□□□ 0.3
SKA3-204ENST00000462482 KRBA1A5PL33 1030 aa16.91■□□□□ 0.3
SKA3-204ENST00000462482 ANHXE9PGG2 379 aa16.91■□□□□ 0.3
SKA3-204ENST00000462482 TMEM189-UBE2V1I3L0A0 370 aa16.91■□□□□ 0.3
SKA3-204ENST00000462482 OR1D2P34982 312 aa16.91■□□□□ 0.3
SKA3-204ENST00000462482 ST3GAL1Q11201 340 aa16.91■□□□□ 0.3
SKA3-204ENST00000462482 DMP1Q13316 513 aaPredicted RBP16.91■□□□□ 0.3
SKA3-204ENST00000462482 RAB33AQ14088 237 aa16.91■□□□□ 0.3
SKA3-204ENST00000462482 AXDND1Q5T1B0 1012 aaPredicted RBP16.91■□□□□ 0.3
SKA3-204ENST00000462482 PHLDB3Q6NSJ2 640 aa16.91■□□□□ 0.3
SKA3-204ENST00000462482 ANKS3Q6ZW76 656 aa16.91■□□□□ 0.3
SKA3-204ENST00000462482 RTL10Q7L3V2 364 aa16.91■□□□□ 0.3
SKA3-204ENST00000462482 SLC7A14Q8TBB6 771 aa16.91■□□□□ 0.3
SKA3-204ENST00000462482 KCNG4Q8TDN1 519 aa16.91■□□□□ 0.3
SKA3-204ENST00000462482 DDX27Q96GQ7 796 aaKnown RBP16.91■□□□□ 0.3
SKA3-204ENST00000462482 DRC1Q96MC2 740 aa16.91■□□□□ 0.3
SKA3-204ENST00000462482 SLC2A4RGQ9NR83 387 aa16.91■□□□□ 0.3
SKA3-204ENST00000462482 SLC38A7Q9NVC3 462 aa16.91■□□□□ 0.3
SKA3-204ENST00000462482 TNFSF13BQ9Y275 285 aa16.91■□□□□ 0.3
SKA3-204ENST00000462482 USP20Q9Y2K6 914 aa16.91■□□□□ 0.3
SKA3-204ENST00000462482 SIT1Q9Y3P8 196 aa16.91■□□□□ 0.3
SKA3-204ENST00000462482 KIF3AQ9Y496 699 aa16.91■□□□□ 0.3
SKA3-204ENST00000462482 WDFY4Q6ZS81 3184 aa16.91■□□□□ 0.3
SKA3-204ENST00000462482 CCL16O15467 120 aa16.9■□□□□ 0.3
SKA3-204ENST00000462482 ELF1P32519 619 aa16.9■□□□□ 0.3
SKA3-204ENST00000462482 ZNF568Q3ZCX4 644 aa16.9■□□□□ 0.3
SKA3-204ENST00000462482 GLRA4Q5JXX5 417 aa16.9■□□□□ 0.3
SKA3-204ENST00000462482 NT5DC1Q5TFE4 455 aa16.9■□□□□ 0.3
SKA3-204ENST00000462482 TCHPQ9BT92 498 aa16.9■□□□□ 0.3
SKA3-204ENST00000462482 MRPL4Q9BYD3 311 aaKnown RBP16.9■□□□□ 0.3
SKA3-204ENST00000462482 SEMA4AQ9H3S1 761 aa16.9■□□□□ 0.3
SKA3-204ENST00000462482 POLD4Q9HCU8 107 aa16.9■□□□□ 0.3
SKA3-204ENST00000462482 KCNG1Q9UIX4 513 aa16.9■□□□□ 0.3
SKA3-204ENST00000462482 RBM19Q9Y4C8 960 aaKnown RBP16.9■□□□□ 0.3
SKA3-204ENST00000462482 ZFHX2Q9C0A1 2572 aaPredicted RBP16.9■□□□□ 0.3
SKA3-204ENST00000462482 CACNA1HO95180 2353 aa16.89■□□□□ 0.3
SKA3-204ENST00000462482 LAD1O00515 517 aa16.89■□□□□ 0.29
SKA3-204ENST00000462482 POU2F2P09086 479 aa16.89■□□□□ 0.29
SKA3-204ENST00000462482 FGFR3P22607 806 aa16.89■□□□□ 0.29
SKA3-204ENST00000462482 GRM5P41594 1212 aa16.89■□□□□ 0.29
SKA3-204ENST00000462482 CLCNKBP51801 687 aa16.89■□□□□ 0.29
SKA3-204ENST00000462482 PEX3P56589 373 aa16.89■□□□□ 0.29
SKA3-204ENST00000462482 NAB2Q15742 525 aa16.89■□□□□ 0.29
SKA3-204ENST00000462482 PABPC1LQ4VXU2 614 aaKnown RBP16.89■□□□□ 0.29
SKA3-204ENST00000462482 SPECC1Q5M775 1068 aa16.89■□□□□ 0.29
SKA3-204ENST00000462482 ADSSL1Q8N142 457 aa16.89■□□□□ 0.29
SKA3-204ENST00000462482 PPP1R10Q96QC0 940 aaKnown RBP16.89■□□□□ 0.29
SKA3-204ENST00000462482 KMT5AQ9NQR1 393 aa16.89■□□□□ 0.29
SKA3-204ENST00000462482 MTRRQ9UBK8 725 aa16.89■□□□□ 0.29
SKA3-204ENST00000462482 KCNH3Q9ULD8 1083 aa16.89■□□□□ 0.29
SKA3-204ENST00000462482 BACE2Q9Y5Z0 518 aa16.89■□□□□ 0.29
SKA3-204ENST00000462482 CDY1Q9Y6F8 540 aa16.89■□□□□ 0.29
SKA3-204ENST00000462482 SMIM28A0A1B0GU29 152 aa16.88■□□□□ 0.29
SKA3-204ENST00000462482 ADAM12O43184 909 aa16.88■□□□□ 0.29
SKA3-204ENST00000462482 NPTX2P47972 431 aa16.88■□□□□ 0.29
SKA3-204ENST00000462482 NTHL1P78549 312 aa16.88■□□□□ 0.29
SKA3-204ENST00000462482 PFKPQ01813 784 aa16.88■□□□□ 0.29
SKA3-204ENST00000462482 PTGDRQ13258 359 aa16.88■□□□□ 0.29
SKA3-204ENST00000462482 ZC3H14Q6PJT7 736 aaKnown RBP16.88■□□□□ 0.29
SKA3-204ENST00000462482 PARM1Q6UWI2 310 aa16.88■□□□□ 0.29
SKA3-204ENST00000462482 DTHD1Q6ZMT9 781 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms