RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 NOL4O94818 638 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 P4HA1P13674 534 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 DLG4P78352 724 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 DGKZQ13574 1117 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 COBLL1Q53SF7 1204 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 XKR3Q5GH77 459 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 EP400NLQ6ZTU2 488 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 SESTD1Q86VW0 696 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 TTC16Q8NEE8 873 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 AENQ8WTP8 325 aaKnown RBP12.4□□□□□ -0.42
NPHP4-204ENST00000460696 C18orf8Q96DM3 657 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 TRIM7Q9C029 511 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 PCDHGC5Q9Y5F6 944 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 LAMA4Q16363 1823 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 MYH13Q9UKX3 1938 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 UBE4BO95155 1302 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 AKAP11Q9UKA4 1901 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.4□□□□□ -0.42
NPHP4-204ENST00000460696 GTPBP10A4D1E9 387 aaKnown RBP12.4□□□□□ -0.42
NPHP4-204ENST00000460696 TGFB1I1O43294 461 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 GUCY2CP25092 1073 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 CCNA1P78396 465 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 BASP1P80723 227 aaKnown RBP12.4□□□□□ -0.42
NPHP4-204ENST00000460696 LMNB2Q03252 620 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 PPP2R5CQ13362 524 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 TRADDQ15628 312 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 CDR2LQ86X02 465 aaPredicted RBP12.4□□□□□ -0.42
NPHP4-204ENST00000460696 C7orf31Q8N865 590 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 TMEM35BQ8NCS4 154 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 ARHGEF26Q96DR7 871 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 TMEM8AQ9HCN3 771 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 PCSK1NQ9UHG2 260 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 HLA-DRAP01903 254 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 VCAM1P19320 739 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 ZNF131P52739 623 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 TFDP1Q14186 410 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 CDO1Q16878 200 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 MUM1L1Q5H9M0 696 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 IRF2BP2Q7Z5L9 587 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 ARHGEF19Q8IW93 802 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 RNF149Q8NC42 400 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 IL31RAQ8NI17 732 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 FBXO25Q8TCJ0 367 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 SAYSD1Q9NPB0 183 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 TAS2R14Q9NYV8 317 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 DBR1Q9UK59 544 aaKnown RBP12.4□□□□□ -0.42
NPHP4-204ENST00000460696 SCINQ9Y6U3 715 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 CRYBG1Q9Y4K1 1723 aa12.4□□□□□ -0.42
NPHP4-204ENST00000460696 SYNJ2BP-COX16A0A087WUM0 186 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 PHF2O75151 1096 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 SYF2O95926 243 aaKnown RBP12.39□□□□□ -0.43
NPHP4-204ENST00000460696 CLK2P49760 499 aaKnown RBP12.39□□□□□ -0.43
NPHP4-204ENST00000460696 SLC29A2Q14542 456 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 BBS9Q3SYG4 887 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 ZNF568Q3ZCX4 644 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 SPDYE2Q495Y8 402 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 PLCD3Q8N3E9 789 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 MDM1Q8TC05 714 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 ACTRT1Q8TDG2 376 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 PSPC1Q8WXF1 523 aaKnown RBP12.39□□□□□ -0.43
NPHP4-204ENST00000460696 ARHGEF2Q92974 986 aaKnown RBP12.39□□□□□ -0.43
NPHP4-204ENST00000460696 COX16Q9P0S2 106 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 MYH7P12883 1935 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 USP54Q70EL1 1684 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 PHF20L1A8MW92 1017 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 SUN1O94901 812 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 CYP3A4P08684 503 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 FDX1P10109 184 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 ITGB5P18084 799 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 FECHP22830 423 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 PSMA2P25787 234 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 STAT5BP51692 787 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 YWHAGP61981 247 aaKnown RBP eCLIP12.39□□□□□ -0.43
NPHP4-204ENST00000460696 HYIQ5T013 277 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 MMS22LQ6ZRQ5 1243 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 ZNF662Q6ZS27 426 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 P3H4Q92791 437 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 AGO4Q9HCK5 861 aaKnown RBP12.39□□□□□ -0.43
NPHP4-204ENST00000460696 FRMPD4Q14CM0 1322 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 WDR91A4D1P6 747 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 ITIH3Q06033 890 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 PPP3CAQ08209 521 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 PPP2R5DQ14738 602 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 ZNF699Q32M78 642 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 ZCWPW2Q504Y3 356 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 FYB2Q5VWT5 728 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 HIBCHQ6NVY1 386 aaPredicted RBP12.39□□□□□ -0.43
NPHP4-204ENST00000460696 SV2AQ7L0J3 742 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 OPTNQ96CV9 577 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 C9orf72Q96LT7 481 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 TACO1Q9BSH4 297 aaKnown RBP12.39□□□□□ -0.43
NPHP4-204ENST00000460696 ANKEF1Q9NU02 776 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 UVRAGQ9P2Y5 699 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 HESX1Q9UBX0 185 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.39□□□□□ -0.43
NPHP4-204ENST00000460696 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.39□□□□□ -0.43
NPHP4-204ENST00000460696 GLI3P10071 1580 aa12.39□□□□□ -0.43
NPHP4-204ENST00000460696 RASSF10A6NK89 507 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 ACTR2P61160 394 aa12.38□□□□□ -0.43
NPHP4-204ENST00000460696 MTM1Q13496 603 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms