RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 HIF1AQ16665 826 aa15.65■□□□□ 0.1
PTPRU-205ENST00000460170 ZDHHC15Q96MV8 337 aa15.65■□□□□ 0.1
PTPRU-205ENST00000460170 COL5A2P05997 1499 aaPredicted RBP15.64■□□□□ 0.1
PTPRU-205ENST00000460170 SPDYE16A6NNV3 312 aaPredicted RBP15.64■□□□□ 0.1
PTPRU-205ENST00000460170 C19orf81C9J6K1 198 aa15.64■□□□□ 0.1
PTPRU-205ENST00000460170 SPDYE2Q495Y8 402 aa15.64■□□□□ 0.1
PTPRU-205ENST00000460170 KCNV1Q6PIU1 500 aa15.64■□□□□ 0.1
PTPRU-205ENST00000460170 DCTN4Q9UJW0 460 aa15.64■□□□□ 0.1
PTPRU-205ENST00000460170 CPSF3Q9UKF6 684 aaKnown RBP15.64■□□□□ 0.1
PTPRU-205ENST00000460170 SH3BGRP55822 239 aaPredicted RBP15.64■□□□□ 0.09
PTPRU-205ENST00000460170 PRKCEQ02156 737 aa15.64■□□□□ 0.09
PTPRU-205ENST00000460170 MICALL2Q8IY33 904 aa15.64■□□□□ 0.09
PTPRU-205ENST00000460170 MMP19Q99542 508 aa15.64■□□□□ 0.09
PTPRU-205ENST00000460170 TRIM56Q9BRZ2 755 aaKnown RBP15.64■□□□□ 0.09
PTPRU-205ENST00000460170 RIMS1Q86UR5 1692 aaKnown RBP15.64■□□□□ 0.09
PTPRU-205ENST00000460170 HLA-DRAP01903 254 aa15.64■□□□□ 0.09
PTPRU-205ENST00000460170 COPB2P35606 906 aa15.64■□□□□ 0.09
PTPRU-205ENST00000460170 EMC2Q15006 297 aa15.64■□□□□ 0.09
PTPRU-205ENST00000460170 HEATR6Q6AI08 1181 aaKnown RBP15.64■□□□□ 0.09
PTPRU-205ENST00000460170 SCFD1Q8WVM8 642 aa15.64■□□□□ 0.09
PTPRU-205ENST00000460170 RBM15Q96T37 977 aaKnown RBP eCLIP15.64■□□□□ 0.09
PTPRU-205ENST00000460170 KLHL11Q9NVR0 708 aa15.64■□□□□ 0.09
PTPRU-205ENST00000460170 STAP1Q9ULZ2 295 aa15.64■□□□□ 0.09
PTPRU-205ENST00000460170 G3BP2Q9UN86 482 aaKnown RBP15.64■□□□□ 0.09
PTPRU-205ENST00000460170 PEX19P40855 299 aa15.64■□□□□ 0.09
PTPRU-205ENST00000460170 TKFCQ3LXA3 575 aa15.64■□□□□ 0.09
PTPRU-205ENST00000460170 EHD4Q9H223 541 aa15.64■□□□□ 0.09
PTPRU-205ENST00000460170 UNC45AQ9H3U1 944 aa15.64■□□□□ 0.09
PTPRU-205ENST00000460170 FBXO28Q9NVF7 368 aa15.64■□□□□ 0.09
PTPRU-205ENST00000460170 ANGPTL2Q9UKU9 493 aa15.64■□□□□ 0.09
PTPRU-205ENST00000460170 SPAG7O75391 227 aa15.64■□□□□ 0.09
PTPRU-205ENST00000460170 XRRA1Q6P2D8 792 aa15.64■□□□□ 0.09
PTPRU-205ENST00000460170 SEPT1Q8WYJ6 367 aa15.64■□□□□ 0.09
PTPRU-205ENST00000460170 ETNK1Q9HBU6 452 aa15.64■□□□□ 0.09
PTPRU-205ENST00000460170 ATMINO43313 823 aaPredicted RBP15.63■□□□□ 0.09
PTPRU-205ENST00000460170 MAP3K7O43318 606 aa15.63■□□□□ 0.09
PTPRU-205ENST00000460170 HAUS5O94927 633 aa15.63■□□□□ 0.09
PTPRU-205ENST00000460170 HSPA4LO95757 839 aa15.63■□□□□ 0.09
PTPRU-205ENST00000460170 IL1R1P14778 569 aa15.63■□□□□ 0.09
PTPRU-205ENST00000460170 CHN1P15882 459 aa15.63■□□□□ 0.09
PTPRU-205ENST00000460170 CASP4P49662 377 aa15.63■□□□□ 0.09
PTPRU-205ENST00000460170 MXD4Q14582 209 aaPredicted RBP15.63■□□□□ 0.09
PTPRU-205ENST00000460170 KIAA0895Q8NCT3 520 aa15.63■□□□□ 0.09
PTPRU-205ENST00000460170 RBM46Q8TBY0 533 aaKnown RBP15.63■□□□□ 0.09
PTPRU-205ENST00000460170 CNOT7Q9UIV1 285 aaKnown RBP15.63■□□□□ 0.09
PTPRU-205ENST00000460170 CFAP73A6NFT4 308 aa15.63■□□□□ 0.09
PTPRU-205ENST00000460170 TAF1BQ53T94 588 aaPredicted RBP15.63■□□□□ 0.09
PTPRU-205ENST00000460170 TWF2Q6IBS0 349 aaKnown RBP15.63■□□□□ 0.09
PTPRU-205ENST00000460170 RWDD4Q6NW29 188 aaKnown RBP15.63■□□□□ 0.09
PTPRU-205ENST00000460170 ZC3H18Q86VM9 953 aaKnown RBP15.63■□□□□ 0.09
PTPRU-205ENST00000460170 ACER1Q8TDN7 264 aa15.63■□□□□ 0.09
PTPRU-205ENST00000460170 OSBPL8Q9BZF1 889 aa15.63■□□□□ 0.09
PTPRU-205ENST00000460170 WDR35Q9P2L0 1181 aa15.63■□□□□ 0.09
PTPRU-205ENST00000460170 PPP1R9AQ9ULJ8 1098 aa15.63■□□□□ 0.09
PTPRU-205ENST00000460170 IGSF9BQ9UPX0 1349 aa15.63■□□□□ 0.09
PTPRU-205ENST00000460170 SPECC1L-ADORA2AF8WAN1 911 aa15.63■□□□□ 0.09
PTPRU-205ENST00000460170 LPXNO60711 386 aa15.63■□□□□ 0.09
PTPRU-205ENST00000460170 RPS6P62753 249 aaKnown RBP15.63■□□□□ 0.09
PTPRU-205ENST00000460170 DRP2Q13474 957 aa15.63■□□□□ 0.09
PTPRU-205ENST00000460170 SGSM1Q2NKQ1 1148 aa15.63■□□□□ 0.09
PTPRU-205ENST00000460170 CDKL3Q8IVW4 592 aaPredicted RBP15.63■□□□□ 0.09
PTPRU-205ENST00000460170 C9orf72Q96LT7 481 aa15.63■□□□□ 0.09
PTPRU-205ENST00000460170 THAP2Q9H0W7 228 aa15.63■□□□□ 0.09
PTPRU-205ENST00000460170 FIS1Q9Y3D6 152 aa15.63■□□□□ 0.09
PTPRU-205ENST00000460170 ARHGAP23Q9P227 1491 aa15.63■□□□□ 0.09
PTPRU-205ENST00000460170 TCP11X1B4DZS4 312 aa15.63■□□□□ 0.09
PTPRU-205ENST00000460170 KIF3CO14782 793 aa15.63■□□□□ 0.09
PTPRU-205ENST00000460170 ARFIP2P53365 341 aa15.63■□□□□ 0.09
PTPRU-205ENST00000460170 EIF3EP60228 445 aaKnown RBP15.63■□□□□ 0.09
PTPRU-205ENST00000460170 MDM2Q00987 491 aaPredicted RBP15.63■□□□□ 0.09
PTPRU-205ENST00000460170 EN1Q05925 392 aaPredicted RBP15.63■□□□□ 0.09
PTPRU-205ENST00000460170 P3H1Q32P28 736 aa15.63■□□□□ 0.09
PTPRU-205ENST00000460170 MUM1L1Q5H9M0 696 aa15.63■□□□□ 0.09
PTPRU-205ENST00000460170 N4BP2L2Q92802 583 aaPredicted RBP15.63■□□□□ 0.09
PTPRU-205ENST00000460170 KIF12Q96FN5 646 aa15.63■□□□□ 0.09
PTPRU-205ENST00000460170 PRMT1Q99873 361 aaKnown RBP15.63■□□□□ 0.09
PTPRU-205ENST00000460170 DHX35Q9H5Z1 703 aaKnown RBP15.63■□□□□ 0.09
PTPRU-205ENST00000460170 A8MXQ7 604 aa15.62■□□□□ 0.09
PTPRU-205ENST00000460170 LMNAP02545 664 aaKnown RBP15.62■□□□□ 0.09
PTPRU-205ENST00000460170 MUTP22033 750 aa15.62■□□□□ 0.09
PTPRU-205ENST00000460170 KCNJ1P48048 391 aa15.62■□□□□ 0.09
PTPRU-205ENST00000460170 GMCL1Q96IK5 515 aa15.62■□□□□ 0.09
PTPRU-205ENST00000460170 XPO6Q96QU8 1125 aaKnown RBP15.62■□□□□ 0.09
PTPRU-205ENST00000460170 GTF3C4Q9UKN8 822 aa15.62■□□□□ 0.09
PTPRU-205ENST00000460170 APOBEC2Q9Y235 224 aaKnown RBP15.62■□□□□ 0.09
PTPRU-205ENST00000460170 BAZ2BQ9UIF8 2168 aaKnown RBP15.62■□□□□ 0.09
PTPRU-205ENST00000460170 FOXN3O00409 490 aaPredicted RBP15.62■□□□□ 0.09
PTPRU-205ENST00000460170 TTC4O95801 387 aa15.62■□□□□ 0.09
PTPRU-205ENST00000460170 KYAT1Q16773 422 aa15.62■□□□□ 0.09
PTPRU-205ENST00000460170 LONRF1Q17RB8 773 aa15.62■□□□□ 0.09
PTPRU-205ENST00000460170 SH3RF1Q7Z6J0 888 aa15.62■□□□□ 0.09
PTPRU-205ENST00000460170 VPS39Q96JC1 886 aa15.62■□□□□ 0.09
PTPRU-205ENST00000460170 TRABDQ9H4I3 376 aa15.62■□□□□ 0.09
PTPRU-205ENST00000460170 TXNP10599 105 aaKnown RBP15.62■□□□□ 0.09
PTPRU-205ENST00000460170 PLCB4Q15147 1175 aa15.62■□□□□ 0.09
PTPRU-205ENST00000460170 C1orf228Q6PIY5 440 aa15.62■□□□□ 0.09
PTPRU-205ENST00000460170 H0Y3Z8 333 aa15.62■□□□□ 0.09
PTPRU-205ENST00000460170 GNAT1P11488 350 aa15.62■□□□□ 0.09
PTPRU-205ENST00000460170 ART3Q13508 389 aa15.62■□□□□ 0.09
PTPRU-205ENST00000460170 COL9A3Q14050 684 aaPredicted RBP15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms