RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 CDCA2Q69YH5 1023 aaPredicted RBP8.57□□□□□ -1.04
CD44-211ENST00000442151 MAEAQ7L5Y9 396 aa8.57□□□□□ -1.04
CD44-211ENST00000442151 DDX27Q96GQ7 796 aaKnown RBP8.57□□□□□ -1.04
CD44-211ENST00000442151 CCDC94Q9BW85 323 aaPredicted RBP8.57□□□□□ -1.04
CD44-211ENST00000442151 EIF2AQ9BY44 585 aaKnown RBP8.57□□□□□ -1.04
CD44-211ENST00000442151 NT5C3AQ9H0P0 336 aa8.57□□□□□ -1.04
CD44-211ENST00000442151 TMEM60Q9H2L4 133 aa8.57□□□□□ -1.04
CD44-211ENST00000442151 MFSD1Q9H3U5 465 aa8.57□□□□□ -1.04
CD44-211ENST00000442151 POMKQ9H5K3 350 aa8.57□□□□□ -1.04
CD44-211ENST00000442151 TMEM134Q9H6X4 195 aa8.57□□□□□ -1.04
CD44-211ENST00000442151 TOPORSQ9NS56 1045 aaPredicted RBP8.57□□□□□ -1.04
CD44-211ENST00000442151 SLC38A7Q9NVC3 462 aa8.57□□□□□ -1.04
CD44-211ENST00000442151 ADAM28Q9UKQ2 775 aa8.57□□□□□ -1.04
CD44-211ENST00000442151 BDP1A6H8Y1 2624 aa8.56□□□□□ -1.04
CD44-211ENST00000442151 MED24O75448 989 aa8.56□□□□□ -1.04
CD44-211ENST00000442151 BMP15O95972 392 aa8.56□□□□□ -1.04
CD44-211ENST00000442151 SSBP05455 408 aaKnown RBP eCLIP8.56□□□□□ -1.04
CD44-211ENST00000442151 U2AF2P26368 475 aaKnown RBP eCLIP8.56□□□□□ -1.04
CD44-211ENST00000442151 AVPR2P30518 371 aa8.56□□□□□ -1.04
CD44-211ENST00000442151 SCNN1GP51170 649 aa8.56□□□□□ -1.04
CD44-211ENST00000442151 DMP1Q13316 513 aaPredicted RBP8.56□□□□□ -1.04
CD44-211ENST00000442151 TDGQ13569 410 aa8.56□□□□□ -1.04
CD44-211ENST00000442151 HSP90AA2PQ14568 343 aaPredicted RBP8.56□□□□□ -1.04
CD44-211ENST00000442151 AMHR2Q16671 573 aa8.56□□□□□ -1.04
CD44-211ENST00000442151 UVSSAQ2YD98 709 aa8.56□□□□□ -1.04
CD44-211ENST00000442151 FUT10Q6P4F1 479 aa8.56□□□□□ -1.04
CD44-211ENST00000442151 DCLRE1AQ6PJP8 1040 aa8.56□□□□□ -1.04
CD44-211ENST00000442151 TMC5Q6UXY8 1006 aa8.56□□□□□ -1.04
CD44-211ENST00000442151 CDK5RAP3Q96JB5 506 aa8.56□□□□□ -1.04
CD44-211ENST00000442151 MRPL4Q9BYD3 311 aaKnown RBP8.56□□□□□ -1.04
CD44-211ENST00000442151 CHST7Q9NS84 486 aa8.56□□□□□ -1.04
CD44-211ENST00000442151 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.56□□□□□ -1.04
CD44-211ENST00000442151 KCND2Q9NZV8 630 aa8.56□□□□□ -1.04
CD44-211ENST00000442151 KIAA1468Q9P260 1216 aa8.56□□□□□ -1.04
CD44-211ENST00000442151 LIMD1Q9UGP4 676 aa8.56□□□□□ -1.04
CD44-211ENST00000442151 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.56□□□□□ -1.04
CD44-211ENST00000442151 CCDC195A0A1B0GUA6 201 aa8.55□□□□□ -1.04
CD44-211ENST00000442151 CCDC169A6NNP5 214 aa8.55□□□□□ -1.04
CD44-211ENST00000442151 MEIS3P2A8K0S8 358 aa8.55□□□□□ -1.04
CD44-211ENST00000442151 C2CD4DB7Z1M9 353 aa8.55□□□□□ -1.04
CD44-211ENST00000442151 C2CD2LO14523 706 aa8.55□□□□□ -1.04
CD44-211ENST00000442151 HNRNPA1P09651 372 aaKnown RBP eCLIP8.55□□□□□ -1.04
CD44-211ENST00000442151 RFX1P22670 979 aa8.55□□□□□ -1.04
CD44-211ENST00000442151 CLCN5P51795 746 aa8.55□□□□□ -1.04
CD44-211ENST00000442151 STRN3Q13033 797 aa8.55□□□□□ -1.04
CD44-211ENST00000442151 KYAT1Q16773 422 aa8.55□□□□□ -1.04
CD44-211ENST00000442151 LIN9Q5TKA1 542 aa8.55□□□□□ -1.04
CD44-211ENST00000442151 SNX29Q8TEQ0 813 aa8.55□□□□□ -1.04
CD44-211ENST00000442151 AUTS2Q8WXX7 1259 aa8.55□□□□□ -1.04
CD44-211ENST00000442151 RIN2Q8WYP3 895 aaPredicted RBP8.55□□□□□ -1.04
CD44-211ENST00000442151 TSPAN18Q96SJ8 248 aa8.55□□□□□ -1.04
CD44-211ENST00000442151 RTP3Q9BQQ7 232 aa8.55□□□□□ -1.04
CD44-211ENST00000442151 TTPALQ9BTX7 342 aa8.55□□□□□ -1.04
CD44-211ENST00000442151 MAN1C1Q9NR34 630 aa8.55□□□□□ -1.04
CD44-211ENST00000442151 KIAA1024Q9UPX6 916 aa8.55□□□□□ -1.04
CD44-211ENST00000442151 ATG2AQ2TAZ0 1938 aa8.55□□□□□ -1.04
CD44-211ENST00000442151 XYLBO75191 536 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 PAX3P23760 479 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 AKAP5P24588 427 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 GGCXP38435 758 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 RBM10P98175 930 aaKnown RBP8.54□□□□□ -1.04
CD44-211ENST00000442151 NHLH1Q02575 133 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 PTGDRQ13258 359 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 ATF7IP2Q5U623 682 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 MCTP1Q6DN14 999 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 TMEM173Q86WV6 379 aaPredicted RBP8.54□□□□□ -1.04
CD44-211ENST00000442151 C12orf76Q8N812 135 aaPredicted RBP8.54□□□□□ -1.04
CD44-211ENST00000442151 SMG7Q92540 1137 aaKnown RBP8.54□□□□□ -1.04
CD44-211ENST00000442151 BORCS6Q96GS4 357 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 TCHPQ9BT92 498 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 BHMT2Q9H2M3 363 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 NXF3Q9H4D5 531 aaKnown RBP8.54□□□□□ -1.04
CD44-211ENST00000442151 WDR6Q9NNW5 1121 aaKnown RBP8.54□□□□□ -1.04
CD44-211ENST00000442151 MARCH5Q9NX47 278 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 MIOSQ9NXC5 875 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 SNTG2Q9NY99 539 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 FBXL21Q9UKT6 434 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 TNFSF13BQ9Y275 285 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 GTF3C3Q9Y5Q9 886 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 TMEM189-UBE2V1I3L0A0 370 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 TEX28O15482 410 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 XPOTO43592 962 aaKnown RBP8.54□□□□□ -1.04
CD44-211ENST00000442151 LIG1P18858 919 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 HOXA9P31269 272 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 GBP2P32456 591 aaPredicted RBP8.54□□□□□ -1.04
CD44-211ENST00000442151 RPL9P32969 192 aaKnown RBP8.54□□□□□ -1.04
CD44-211ENST00000442151 ARL6IP4Q66PJ3 421 aaKnown RBP8.54□□□□□ -1.04
CD44-211ENST00000442151 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.54□□□□□ -1.04
CD44-211ENST00000442151 ALYREFQ86V81 257 aaKnown RBP8.54□□□□□ -1.04
CD44-211ENST00000442151 RNF168Q8IYW5 571 aaPredicted RBP8.54□□□□□ -1.04
CD44-211ENST00000442151 IGSF22Q8N9C0 903 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 BCL7CQ8WUZ0 217 aaPredicted RBP8.54□□□□□ -1.04
CD44-211ENST00000442151 PIK3R5Q8WYR1 880 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 CALML4Q96GE6 196 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 AK8Q96MA6 479 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 ZFP42Q96MM3 310 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 ACAP3Q96P50 834 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 OXCT2Q9BYC2 517 aaPredicted RBP8.54□□□□□ -1.04
CD44-211ENST00000442151 PDZD7Q9H5P4 517 aa8.54□□□□□ -1.04
CD44-211ENST00000442151 GPRC5CQ9NQ84 441 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms