RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 SFNP31947 248 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 HSD17B3P37058 310 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 PLTPP55058 493 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 GTF2BQ00403 316 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 SV2AQ7L0J3 742 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 CDR2LQ86X02 465 aaPredicted RBP10.18□□□□□ -0.78
CUX1-206ENST00000437600 RASAL3Q86YV0 1011 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 PASD1Q8IV76 773 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 FBXO16Q8IX29 292 aaPredicted RBP10.18□□□□□ -0.78
CUX1-206ENST00000437600 PARD3BQ8TEW8 1205 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 RFFLQ8WZ73 363 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 SYT11Q9BT88 431 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 TMEM206Q9H813 350 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 XPNPEP1Q9NQW7 623 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 NENFQ9UMX5 172 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 LOC102724159A0A0B4J2E5 919 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 TTLL13PA6NNM8 815 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 SPATA31C2B4DYI2 1134 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 PSAPP07602 524 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 PYGMP11217 842 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 YY1P25490 414 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 CETN1Q12798 172 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 DMP1Q13316 513 aaPredicted RBP10.18□□□□□ -0.78
CUX1-206ENST00000437600 SNX1Q13596 522 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 PPP2R5AQ15172 486 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 PWP2Q15269 919 aaKnown RBP10.18□□□□□ -0.78
CUX1-206ENST00000437600 UAP1Q16222 522 aaPredicted RBP10.18□□□□□ -0.78
CUX1-206ENST00000437600 C10orf76Q5T2E6 689 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 FASTKD5Q7L8L6 764 aaKnown RBP10.18□□□□□ -0.78
CUX1-206ENST00000437600 SLFN11Q7Z7L1 901 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 SRLQ86TD4 932 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 ZNF784Q8NCA9 323 aaPredicted RBP10.18□□□□□ -0.78
CUX1-206ENST00000437600 LMBR1Q8WVP7 490 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 FAM212AQ96EL1 285 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 DNAJC17Q9NVM6 304 aaKnown RBP10.18□□□□□ -0.78
CUX1-206ENST00000437600 PSD3Q9NYI0 1048 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 CPA4Q9UI42 421 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 DBR1Q9UK59 544 aaKnown RBP10.18□□□□□ -0.78
CUX1-206ENST00000437600 PASKQ96RG2 1323 aa10.18□□□□□ -0.78
CUX1-206ENST00000437600 TLDC2A0PJX2 215 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 ANKRD62A6NC57 917 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 GGPS1O95749 300 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 TMOD1P28289 359 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 CTNNA1P35221 906 aaKnown RBP10.17□□□□□ -0.78
CUX1-206ENST00000437600 SMTNP53814 917 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 DHX9Q08211 1270 aaKnown RBP10.17□□□□□ -0.78
CUX1-206ENST00000437600 DRP2Q13474 957 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 TRIP13Q15645 432 aaPredicted RBP10.17□□□□□ -0.78
CUX1-206ENST00000437600 IFI16Q16666 785 aaKnown RBP10.17□□□□□ -0.78
CUX1-206ENST00000437600 HSDL1Q3SXM5 330 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 ABHD15Q6UXT9 468 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 ACTRT1Q8TDG2 376 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 EPS8L1Q8TE68 723 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 ZNF516Q92618 1163 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 ATP6V0A1Q93050 837 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 PBKQ96KB5 322 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 KCND2Q9NZV8 630 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 SUCLA2Q9P2R7 463 aaPredicted RBP10.17□□□□□ -0.78
CUX1-206ENST00000437600 RNF14Q9UBS8 474 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 AOC2O75106 756 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 STBD1O95210 358 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 TMEM253P0C7T8 217 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 TNNI1P19237 187 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 MUTP22033 750 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 GTF2A2P52657 109 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 GLE1Q53GS7 698 aaKnown RBP10.17□□□□□ -0.78
CUX1-206ENST00000437600 RIOX2Q8IUF8 465 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 CHST13Q8NET6 341 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 CYP26B1Q9NR63 512 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 PDGFCQ9NRA1 345 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 ANKFY1Q9P2R3 1169 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 MYH9P35579 1960 aaKnown RBP10.17□□□□□ -0.78
CUX1-206ENST00000437600 O00370 1275 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 CSDE1O75534 798 aaKnown RBP10.17□□□□□ -0.78
CUX1-206ENST00000437600 CETPP11597 493 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 GJC1P36383 396 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 POLGP54098 1239 aaPredicted RBP10.17□□□□□ -0.78
CUX1-206ENST00000437600 ZNF394Q53GI3 561 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 ODF2Q5BJF6 829 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 RGMBQ6NW40 437 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 PPP1R13LQ8WUF5 828 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 POLR3FQ9H1D9 316 aaPredicted RBP10.17□□□□□ -0.78
CUX1-206ENST00000437600 PPANQ9NQ55 473 aaKnown RBP10.17□□□□□ -0.78
CUX1-206ENST00000437600 ZNF302Q9NR11 478 aa10.17□□□□□ -0.78
CUX1-206ENST00000437600 LRRIQ4A6NIV6 560 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 FOXO6A8MYZ6 492 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 LYPLA2O95372 231 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 SUPT20HL2P0C7V6 817 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 CYP11B1P15538 503 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 OSBPP22059 807 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 ICE2Q659A1 982 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 OTUD6AQ7L8S5 288 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 TAS1R3Q7RTX0 852 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 PRUNE1Q86TP1 453 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 SLC9A9Q8IVB4 645 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 MSL3Q8N5Y2 521 aaKnown RBP10.16□□□□□ -0.78
CUX1-206ENST00000437600 TRAPPC12Q8WVT3 735 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 C1orf54Q8WWF1 131 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 CAVIN3Q969G5 261 aa10.16□□□□□ -0.78
CUX1-206ENST00000437600 PPP1R16BQ96T49 567 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms