RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 MRPL40Q9NQ50 206 aaKnown RBP16.25■□□□□ 0.19
PTPRF-206ENST00000429895 SELENONQ9NZV5 590 aa16.25■□□□□ 0.19
PTPRF-206ENST00000429895 TRAPPC3O43617 180 aa16.25■□□□□ 0.19
PTPRF-206ENST00000429895 GRAMD4Q6IC98 578 aa16.25■□□□□ 0.19
PTPRF-206ENST00000429895 ATP11CQ8NB49 1132 aa16.25■□□□□ 0.19
PTPRF-206ENST00000429895 HPS3Q969F9 1004 aa16.25■□□□□ 0.19
PTPRF-206ENST00000429895 TRIM62Q9BVG3 475 aa16.25■□□□□ 0.19
PTPRF-206ENST00000429895 AARS2Q5JTZ9 985 aaKnown RBP16.24■□□□□ 0.19
PTPRF-206ENST00000429895 TEDDM1Q5T9Z0 273 aa16.24■□□□□ 0.19
PTPRF-206ENST00000429895 EFHBQ8N7U6 833 aa16.24■□□□□ 0.19
PTPRF-206ENST00000429895 OTUB1Q96FW1 271 aaPredicted RBP16.24■□□□□ 0.19
PTPRF-206ENST00000429895 ELMO2Q96JJ3 720 aa16.24■□□□□ 0.19
PTPRF-206ENST00000429895 KDM5CP41229 1560 aa16.24■□□□□ 0.19
PTPRF-206ENST00000429895 UBE3AQ05086 875 aa16.24■□□□□ 0.19
PTPRF-206ENST00000429895 ECT2Q9H8V3 914 aa16.24■□□□□ 0.19
PTPRF-206ENST00000429895 GGPS1O95749 300 aa16.24■□□□□ 0.19
PTPRF-206ENST00000429895 ALDH18A1P54886 795 aaKnown RBP16.24■□□□□ 0.19
PTPRF-206ENST00000429895 PABPC5Q96DU9 382 aaKnown RBP16.24■□□□□ 0.19
PTPRF-206ENST00000429895 AGPAT1Q99943 283 aa16.24■□□□□ 0.19
PTPRF-206ENST00000429895 TTC39CQ8N584 583 aa16.24■□□□□ 0.19
PTPRF-206ENST00000429895 EXOC4Q96A65 974 aa16.24■□□□□ 0.19
PTPRF-206ENST00000429895 CYP19A1P11511 503 aaPredicted RBP16.24■□□□□ 0.19
PTPRF-206ENST00000429895 ACTR2P61160 394 aa16.24■□□□□ 0.19
PTPRF-206ENST00000429895 NUP93Q8N1F7 819 aa16.24■□□□□ 0.19
PTPRF-206ENST00000429895 NEO1Q92859 1461 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 TSPOAP1O95153 1857 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 TEX33O43247 280 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 EFCAB14O75071 495 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 HIST1H2AGP0C0S8 130 aaPredicted RBP16.23■□□□□ 0.19
PTPRF-206ENST00000429895 HIST1H2ADP20671 130 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 E2F4Q16254 413 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 TRIM72Q6ZMU5 477 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 MB21D2Q8IYB1 491 aaPredicted RBP16.23■□□□□ 0.19
PTPRF-206ENST00000429895 TBC1D19Q8N5T2 526 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 HIST1H2AHQ96KK5 128 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 ZNF512Q96ME7 567 aaPredicted RBP16.23■□□□□ 0.19
PTPRF-206ENST00000429895 HIST1H2AJQ99878 128 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 H2AFJQ9BTM1 129 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 NOP53Q9NZM5 478 aaKnown RBP16.23■□□□□ 0.19
PTPRF-206ENST00000429895 CLASP1Q7Z460 1538 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 FOXN1O15353 648 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 KYAT1Q16773 422 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 MGAT5BQ3V5L5 792 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 TJAP1Q5JTD0 557 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 SLC25A41Q8N5S1 370 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 CALR3Q96L12 384 aaKnown RBP16.23■□□□□ 0.19
PTPRF-206ENST00000429895 ZFATQ9P243 1243 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 CNOT7Q9UIV1 285 aaKnown RBP16.23■□□□□ 0.19
PTPRF-206ENST00000429895 C5orf58C9J3I9 102 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 EFNA5P52803 228 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 EPHA7Q15375 998 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 MEI1Q5TIA1 1274 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 ATPAF2Q8N5M1 289 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 PPP2R2AP63151 447 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 PPP2R3CQ969Q6 453 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 TSSK1BQ9BXA7 367 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 TMEM161AQ9NX61 479 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 GSG1L2A8MUP6 293 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 GRAP2O75791 330 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 AP3M2P53677 418 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 BAATQ14032 418 aaPredicted RBP16.23■□□□□ 0.19
PTPRF-206ENST00000429895 DMC1Q14565 340 aa16.23■□□□□ 0.19
PTPRF-206ENST00000429895 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.23■□□□□ 0.19
PTPRF-206ENST00000429895 SCP2P22307 547 aa16.22■□□□□ 0.19
PTPRF-206ENST00000429895 TMEM132DQ14C87 1099 aa16.22■□□□□ 0.19
PTPRF-206ENST00000429895 SP8Q8IXZ3 490 aa16.22■□□□□ 0.19
PTPRF-206ENST00000429895 ERVK-7P63135 1459 aa16.22■□□□□ 0.19
PTPRF-206ENST00000429895 AP2B1P63010 937 aa16.22■□□□□ 0.19
PTPRF-206ENST00000429895 ENOSF1Q7L5Y1 443 aa16.22■□□□□ 0.19
PTPRF-206ENST00000429895 SNX31Q8N9S9 440 aa16.22■□□□□ 0.19
PTPRF-206ENST00000429895 HSPBP1Q9NZL4 362 aa16.22■□□□□ 0.19
PTPRF-206ENST00000429895 PNMA6AP0CW24 399 aaPredicted RBP16.22■□□□□ 0.19
PTPRF-206ENST00000429895 NFIXQ14938 502 aa16.22■□□□□ 0.19
PTPRF-206ENST00000429895 FOPNLQ96NB1 174 aa16.22■□□□□ 0.19
PTPRF-206ENST00000429895 TRAF3IP3Q9Y228 551 aa16.22■□□□□ 0.19
PTPRF-206ENST00000429895 SH3BP1Q9Y3L3 701 aa16.22■□□□□ 0.19
PTPRF-206ENST00000429895 CFAP74Q9C0B2 1584 aa16.22■□□□□ 0.19
PTPRF-206ENST00000429895 DISP1Q96F81 1524 aa16.22■□□□□ 0.19
PTPRF-206ENST00000429895 ETFBP38117 255 aa16.22■□□□□ 0.19
PTPRF-206ENST00000429895 CCDC157Q569K6 752 aa16.22■□□□□ 0.19
PTPRF-206ENST00000429895 C11orf96Q7Z7L8 435 aa16.22■□□□□ 0.19
PTPRF-206ENST00000429895 FAM84BQ96KN1 310 aaPredicted RBP16.22■□□□□ 0.19
PTPRF-206ENST00000429895 ARHGEF7Q14155 803 aa16.22■□□□□ 0.19
PTPRF-206ENST00000429895 SPATA31A3Q5VYP0 1347 aa16.21■□□□□ 0.19
PTPRF-206ENST00000429895 TTC26A0AVF1 554 aa16.21■□□□□ 0.19
PTPRF-206ENST00000429895 C3orf70A6NLC5 250 aaPredicted RBP16.21■□□□□ 0.19
PTPRF-206ENST00000429895 USP11P51784 963 aa16.21■□□□□ 0.19
PTPRF-206ENST00000429895 NLRP11P59045 1033 aaKnown RBP16.21■□□□□ 0.19
PTPRF-206ENST00000429895 TAP1Q03518 808 aa16.21■□□□□ 0.19
PTPRF-206ENST00000429895 HIF1AQ16665 826 aa16.21■□□□□ 0.19
PTPRF-206ENST00000429895 PCDHB8Q9UN66 801 aa16.21■□□□□ 0.19
PTPRF-206ENST00000429895 OR1G1P47890 313 aa16.21■□□□□ 0.19
PTPRF-206ENST00000429895 COG2Q14746 738 aa16.21■□□□□ 0.19
PTPRF-206ENST00000429895 KCNV1Q6PIU1 500 aa16.21■□□□□ 0.19
PTPRF-206ENST00000429895 HERC5Q9UII4 1024 aaKnown RBP16.21■□□□□ 0.19
PTPRF-206ENST00000429895 KIF21AQ7Z4S6 1674 aa16.21■□□□□ 0.19
PTPRF-206ENST00000429895 RPS6KA5O75582 802 aa16.21■□□□□ 0.19
PTPRF-206ENST00000429895 EYA4O95677 639 aa16.21■□□□□ 0.19
PTPRF-206ENST00000429895 C18orf8Q96DM3 657 aa16.21■□□□□ 0.19
PTPRF-206ENST00000429895 KIF28PB7ZC32 967 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms