RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 NFU1Q9UMS0 254 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 TACC3Q9Y6A5 838 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 LTBP4Q8N2S1 1624 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 PIK3C2AO00443 1686 aa11.36□□□□□ -0.59
TCOF1-204ENST00000427724 CHUKO15111 745 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 CTNNB1P35222 781 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 TMEM132DQ14C87 1099 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 TMEM270Q6UE05 265 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 TAB3Q8N5C8 712 aaPredicted RBP11.35□□□□□ -0.59
TCOF1-204ENST00000427724 MTMR14Q8NCE2 650 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 REPS2Q8NFH8 660 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 LENG1Q96BZ8 264 aaPredicted RBP11.35□□□□□ -0.59
TCOF1-204ENST00000427724 SPON2Q9BUD6 331 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 MTRF1LQ9UGC7 380 aaKnown RBP11.35□□□□□ -0.59
TCOF1-204ENST00000427724 AFG3L2Q9Y4W6 797 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 SYNGAP1Q96PV0 1343 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 NR3C1P04150 777 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 ASGR1P07306 291 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 COASYQ13057 564 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 PPP2R5CQ13362 524 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 RWDD4Q6NW29 188 aaKnown RBP11.35□□□□□ -0.59
TCOF1-204ENST00000427724 CACNA2D3Q8IZS8 1091 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 ATP8B4Q8TF62 1192 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 MRRFQ96E11 262 aaKnown RBP11.35□□□□□ -0.59
TCOF1-204ENST00000427724 LGALS2P05162 132 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 HMBSP08397 361 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 SLC26A2P50443 739 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 CCDC6Q16204 474 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 PCNX4Q63HM2 1172 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 PDZD4Q76G19 769 aaPredicted RBP11.35□□□□□ -0.59
TCOF1-204ENST00000427724 UHMK1Q8TAS1 419 aaKnown RBP11.35□□□□□ -0.59
TCOF1-204ENST00000427724 YY1AP1Q9H869 796 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 ABI2Q9NYB9 513 aaPredicted RBP11.35□□□□□ -0.59
TCOF1-204ENST00000427724 SEL1LQ9UBV2 794 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 AMFRQ9UKV5 643 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 ITIH6Q6UXX5 1313 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 TULP2O00295 520 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 NDC80O14777 642 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 PCK1P35558 622 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 KCNA10Q16322 511 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 NBPF20Q3BBV1 942 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 BTBD8Q5XKL5 378 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 RASAL3Q86YV0 1011 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 CCNYQ8ND76 341 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 BHMTQ93088 406 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 TRIM9Q9C026 710 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 SMARCAL1Q9NZC9 954 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 FBXL21Q9UKT6 434 aa11.35□□□□□ -0.59
TCOF1-204ENST00000427724 GOLGB1Q14789 3259 aaKnown RBP11.34□□□□□ -0.59
TCOF1-204ENST00000427724 A0A1W2PQC6 194 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 TSTA3Q13630 321 aaPredicted RBP11.34□□□□□ -0.59
TCOF1-204ENST00000427724 CCDC157Q569K6 752 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 COG1Q8WTW3 980 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 L3MBTL3Q96JM7 780 aaPredicted RBP11.34□□□□□ -0.59
TCOF1-204ENST00000427724 NSRP1Q9H0G5 558 aaKnown RBP11.34□□□□□ -0.59
TCOF1-204ENST00000427724 KCNK9Q9NPC2 374 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 MYO1FO00160 1098 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 NPM3O75607 178 aaKnown RBP11.34□□□□□ -0.59
TCOF1-204ENST00000427724 TRIM49P0CI25 452 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 TRIM49CP0CI26 452 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 CCL5P13501 91 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 NNTQ13423 1086 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 PDIA5Q14554 519 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 CCDC14Q49A88 953 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 BEND6Q5SZJ8 279 aaPredicted RBP11.34□□□□□ -0.59
TCOF1-204ENST00000427724 LRRC31Q6UY01 552 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 ZNF365Q70YC5 407 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 ELOA2Q8IYF1 753 aaPredicted RBP11.34□□□□□ -0.59
TCOF1-204ENST00000427724 APPL2Q8NEU8 664 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 SIK2Q9H0K1 926 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 RIOX1Q9H6W3 641 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 STK38LQ9Y2H1 464 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 MROH7Q68CQ1 1323 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 KCPQ6ZWJ8 1503 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 ANO9A1A5B4 782 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 KLRG2A4D1S0 409 aaPredicted RBP11.34□□□□□ -0.59
TCOF1-204ENST00000427724 GFPT2O94808 682 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 FGBP02675 491 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 GJB1P08034 283 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 UBA1P22314 1058 aaKnown RBP11.34□□□□□ -0.59
TCOF1-204ENST00000427724 SARSP49591 514 aaKnown RBP11.34□□□□□ -0.59
TCOF1-204ENST00000427724 VPS41P49754 854 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 EPHB1P54762 984 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 RBP5P82980 135 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 TBX2Q13207 712 aaPredicted RBP11.34□□□□□ -0.59
TCOF1-204ENST00000427724 ORC2Q13416 577 aaPredicted RBP11.34□□□□□ -0.59
TCOF1-204ENST00000427724 SEC23AQ15436 765 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 PKN1Q16512 942 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 CCDC105Q8IYK2 499 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 GPD1LQ8N335 351 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 UBL4BQ8N7F7 174 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 SPATS2LQ9NUQ6 558 aaKnown RBP11.34□□□□□ -0.59
TCOF1-204ENST00000427724 BTBD7Q9P203 1132 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 ASIC3Q9UHC3 531 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 PACSIN2Q9UNF0 486 aaPredicted RBP11.34□□□□□ -0.59
TCOF1-204ENST00000427724 RIPK3Q9Y572 518 aa11.34□□□□□ -0.59
TCOF1-204ENST00000427724 ESYT2A0FGR8 921 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 RPLP2P05387 115 aaKnown RBP11.33□□□□□ -0.6
TCOF1-204ENST00000427724 SREBF1P36956 1147 aa11.33□□□□□ -0.6
TCOF1-204ENST00000427724 TLE2Q04725 743 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms