RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 CCT6BQ92526 530 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 IQCDQ96DY2 449 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 PAPPAQ13219 1627 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 UMODL1Q5DID0 1318 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 IGLV3-22A0A075B6J6 115 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 POLRMTO00411 1230 aaKnown RBP9.23□□□□□ -0.93
USP40-203ENST00000427112 RASSF9O75901 435 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 PDE6CP51160 858 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 SNRNP35Q16560 246 aaKnown RBP9.23□□□□□ -0.93
USP40-203ENST00000427112 C6orf89Q6UWU4 347 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 MREGQ8N565 214 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 NACC1Q96RE7 527 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 YIPF3Q9GZM5 350 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 SWAP70Q9UH65 585 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 PCSK1NQ9UHG2 260 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 ATF2P15336 505 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 MARK3P27448 753 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 PTGIRP43119 386 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 TAS2R40P59535 323 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 P3H1Q32P28 736 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 TXNRD3NBQ6F5E7 133 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 PPP4R3CPQ6ZMV5 832 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 SUGP1Q8IWZ8 645 aaKnown RBP9.23□□□□□ -0.93
USP40-203ENST00000427112 XXYLT1Q8NBI6 393 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 ERP27Q96DN0 273 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 CEP170P1Q96L14 293 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 PIH1D1Q9NWS0 290 aaKnown RBP9.23□□□□□ -0.93
USP40-203ENST00000427112 LARSQ9P2J5 1176 aaKnown RBP9.23□□□□□ -0.93
USP40-203ENST00000427112 LAMA2P24043 3122 aaKnown RBP9.23□□□□□ -0.93
USP40-203ENST00000427112 DDX60LQ5H9U9 1706 aaKnown RBP9.23□□□□□ -0.93
USP40-203ENST00000427112 LRP5O75197 1615 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 CYP11B1P15538 503 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 CTNNA2P26232 953 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 RPL7AP62424 266 aaKnown RBP9.22□□□□□ -0.93
USP40-203ENST00000427112 FMO1Q01740 532 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 CNGA2Q16280 664 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 FAXCQ5TGI0 409 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 CC2D2BQ6DHV5 1058 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 TMEM179Q6ZVK1 233 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 FITM2Q8N6M3 262 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 ATXN2LQ8WWM7 1075 aaKnown RBP9.22□□□□□ -0.93
USP40-203ENST00000427112 BSNDQ8WZ55 320 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 PPP1R12CQ9BZL4 782 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 ZCWPW1Q9H0M4 648 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 PASKQ96RG2 1323 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 PITPNM2Q9BZ72 1349 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 CCDC195A0A1B0GUA6 201 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 A0A1W2PPM1 405 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 LRRIQ4A6NIV6 560 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 PSMD10O75832 226 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 KITP10721 976 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 TNFRSF8P28908 595 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 YWHABP31946 246 aaKnown RBP9.22□□□□□ -0.93
USP40-203ENST00000427112 RWDD2BP57060 319 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 POU5F1Q01860 360 aaKnown RBP9.22□□□□□ -0.93
USP40-203ENST00000427112 NEDD9Q14511 834 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 LRIG3Q6UXM1 1119 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 COL23A1Q86Y22 540 aaPredicted RBP9.22□□□□□ -0.93
USP40-203ENST00000427112 AKT1S1Q96B36 256 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 SHCBP1LQ9BZQ2 653 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 MARCOQ9UEW3 520 aaPredicted RBP9.22□□□□□ -0.93
USP40-203ENST00000427112 SEPT9Q9UHD8 586 aaPredicted RBP9.22□□□□□ -0.93
USP40-203ENST00000427112 ZMYND8Q9ULU4 1186 aaPredicted RBP9.22□□□□□ -0.93
USP40-203ENST00000427112 A0A0G2JND7 137 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 PPFIA2O75334 1257 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 CNGA1P29973 690 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 PRKCIP41743 596 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 IZUMO3Q5VZ72 239 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 SWSAP1Q6NVH7 229 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 CD302Q8IX05 232 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 OLIG1Q8TAK6 271 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 FAM20AQ96MK3 541 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 FIZ1Q96SL8 496 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 TAOK3Q9H2K8 898 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 NAALADL1Q9UQQ1 740 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 PCDHB4Q9Y5E5 795 aa9.22□□□□□ -0.93
USP40-203ENST00000427112 GRAP2O75791 330 aa9.21□□□□□ -0.93
USP40-203ENST00000427112 CA4P22748 312 aa9.21□□□□□ -0.93
USP40-203ENST00000427112 SEPT7Q16181 437 aaKnown RBP9.21□□□□□ -0.93
USP40-203ENST00000427112 PKN2Q16513 984 aaKnown RBP9.21□□□□□ -0.93
USP40-203ENST00000427112 ZBED8Q8IZ13 594 aa9.21□□□□□ -0.93
USP40-203ENST00000427112 JDP2Q8WYK2 163 aa9.21□□□□□ -0.93
USP40-203ENST00000427112 TMEM121Q9BTD3 319 aa9.21□□□□□ -0.93
USP40-203ENST00000427112 PITPNM3Q9BZ71 974 aa9.21□□□□□ -0.93
USP40-203ENST00000427112 CARD9Q9H257 536 aa9.21□□□□□ -0.93
USP40-203ENST00000427112 NPHS2Q9NP85 383 aa9.21□□□□□ -0.93
USP40-203ENST00000427112 NKIRAS1Q9NYS0 192 aa9.21□□□□□ -0.93
USP40-203ENST00000427112 TMOD2Q9NZR1 351 aa9.21□□□□□ -0.93
USP40-203ENST00000427112 GABBR1Q9UBS5 961 aa9.21□□□□□ -0.93
USP40-203ENST00000427112 GTF3C4Q9UKN8 822 aa9.21□□□□□ -0.93
USP40-203ENST00000427112 KIAA1551Q9HCM1 1747 aa9.21□□□□□ -0.93
USP40-203ENST00000427112 EXOC1LA0A1B0GW35 172 aa9.21□□□□□ -0.93
USP40-203ENST00000427112 WEE2P0C1S8 567 aa9.21□□□□□ -0.93
USP40-203ENST00000427112 ZBTB48P10074 688 aaPredicted RBP9.21□□□□□ -0.93
USP40-203ENST00000427112 CYP3A7P24462 503 aa9.21□□□□□ -0.93
USP40-203ENST00000427112 ADSSP30520 456 aa9.21□□□□□ -0.93
USP40-203ENST00000427112 FOXN2P32314 431 aa9.21□□□□□ -0.93
USP40-203ENST00000427112 GPS1Q13098 491 aa9.21□□□□□ -0.93
USP40-203ENST00000427112 MTMR1Q13613 665 aa9.21□□□□□ -0.93
USP40-203ENST00000427112 NAIF1Q69YI7 327 aaPredicted RBP9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms