RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 RPP25Q9BUL9 199 aaKnown RBP12.74□□□□□ -0.37
USP4-204ENST00000416417 RUSC1Q9BVN2 902 aa12.74□□□□□ -0.37
USP4-204ENST00000416417 PLEKHA4Q9H4M7 779 aa12.74□□□□□ -0.37
USP4-204ENST00000416417 DPP7Q9UHL4 492 aa12.74□□□□□ -0.37
USP4-204ENST00000416417 POLIQ9UNA4 740 aa12.74□□□□□ -0.37
USP4-204ENST00000416417 SFI1A8K8P3 1242 aa12.73□□□□□ -0.37
USP4-204ENST00000416417 HIP1RO75146 1068 aa12.73□□□□□ -0.37
USP4-204ENST00000416417 BRCC3P46736 316 aa12.73□□□□□ -0.37
USP4-204ENST00000416417 CLCN5P51795 746 aa12.73□□□□□ -0.37
USP4-204ENST00000416417 HMGN5P82970 282 aaKnown RBP12.73□□□□□ -0.37
USP4-204ENST00000416417 SOX4Q06945 474 aaPredicted RBP12.73□□□□□ -0.37
USP4-204ENST00000416417 RAD51AP2Q09MP3 1159 aa12.73□□□□□ -0.37
USP4-204ENST00000416417 PPP2R5AQ15172 486 aa12.73□□□□□ -0.37
USP4-204ENST00000416417 C8orf34Q49A92 452 aa12.73□□□□□ -0.37
USP4-204ENST00000416417 ERICH6BQ5W0A0 696 aa12.73□□□□□ -0.37
USP4-204ENST00000416417 ELMSAN1Q6PJG2 1045 aa12.73□□□□□ -0.37
USP4-204ENST00000416417 CD300LGQ6UXG3 332 aa12.73□□□□□ -0.37
USP4-204ENST00000416417 TAS1R3Q7RTX0 852 aa12.73□□□□□ -0.37
USP4-204ENST00000416417 FRMD5Q7Z6J6 570 aa12.73□□□□□ -0.37
USP4-204ENST00000416417 DAW1Q8N136 415 aa12.73□□□□□ -0.37
USP4-204ENST00000416417 C3orf58Q8NDZ4 430 aa12.73□□□□□ -0.37
USP4-204ENST00000416417 PIK3R5Q8WYR1 880 aa12.73□□□□□ -0.37
USP4-204ENST00000416417 STAMQ92783 540 aa12.73□□□□□ -0.37
USP4-204ENST00000416417 HCFC1R1Q9NWW0 138 aa12.73□□□□□ -0.37
USP4-204ENST00000416417 ZDHHC7Q9NXF8 308 aa12.73□□□□□ -0.37
USP4-204ENST00000416417 IGSF9Q9P2J2 1179 aa12.73□□□□□ -0.37
USP4-204ENST00000416417 EPS15L1Q9UBC2 864 aa12.73□□□□□ -0.37
USP4-204ENST00000416417 FBXW11Q9UKB1 542 aa12.73□□□□□ -0.37
USP4-204ENST00000416417 ZMYM2Q9UBW7 1377 aa12.73□□□□□ -0.37
USP4-204ENST00000416417 K7ERI5 159 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 C8AP07357 584 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 HARSP12081 509 aaKnown RBP12.72□□□□□ -0.37
USP4-204ENST00000416417 LAMP2P13473 410 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 FSHRP23945 695 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 U2AF2P26368 475 aaKnown RBP eCLIP12.72□□□□□ -0.37
USP4-204ENST00000416417 TKTP29401 623 aaKnown RBP12.72□□□□□ -0.37
USP4-204ENST00000416417 OR1D2P34982 312 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 NPTX2P47972 431 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 ORC2Q13416 577 aaPredicted RBP12.72□□□□□ -0.37
USP4-204ENST00000416417 DCAF4L1Q3SXM0 396 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 PPM1LQ5SGD2 360 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 MCTP1Q6DN14 999 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 IGSF22Q8N9C0 903 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 ITFG1Q8TB96 612 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 GPR152Q8TDT2 470 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 HDAC7Q8WUI4 952 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 KIFAP3Q92845 792 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 ZBTB45Q96K62 511 aaPredicted RBP12.72□□□□□ -0.37
USP4-204ENST00000416417 PPP1R10Q96QC0 940 aaKnown RBP12.72□□□□□ -0.37
USP4-204ENST00000416417 MMTAG2Q9BU76 263 aaKnown RBP12.72□□□□□ -0.37
USP4-204ENST00000416417 TARS2Q9BW92 718 aaKnown RBP12.72□□□□□ -0.37
USP4-204ENST00000416417 CDT1Q9H211 546 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 SH2B1Q9NRF2 756 aaPredicted RBP12.72□□□□□ -0.37
USP4-204ENST00000416417 NUMBLQ9Y6R0 609 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 SLC16A4O15374 487 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 B3GAT3O94766 335 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 AOC1P19801 751 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 TRAPPC10P48553 1259 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 EFNA5P52803 228 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 MAPK7Q13164 816 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 SEZ6Q53EL9 994 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 SPECC1Q5M775 1068 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 LIN9Q5TKA1 542 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 PARM1Q6UWI2 310 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 CYP26C1Q6V0L0 522 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 SLC7A14Q8TBB6 771 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 ZMAT2Q96NC0 199 aaKnown RBP12.72□□□□□ -0.37
USP4-204ENST00000416417 ACO2Q99798 780 aaKnown RBP12.72□□□□□ -0.37
USP4-204ENST00000416417 RHOBTB2Q9BYZ6 727 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 COL4A3Q01955 1670 aa12.72□□□□□ -0.37
USP4-204ENST00000416417 ZFHX2Q9C0A1 2572 aaPredicted RBP12.71□□□□□ -0.37
USP4-204ENST00000416417 NPHP3-ACAD11A0A0J9YXS1 232 aa12.71□□□□□ -0.38
USP4-204ENST00000416417 SMIM28A0A1B0GU29 152 aa12.71□□□□□ -0.38
USP4-204ENST00000416417 MEFVO15553 781 aaPredicted RBP12.71□□□□□ -0.38
USP4-204ENST00000416417 DCNP07585 359 aaKnown RBP12.71□□□□□ -0.38
USP4-204ENST00000416417 MUTP22033 750 aa12.71□□□□□ -0.38
USP4-204ENST00000416417 FGFR3P22607 806 aa12.71□□□□□ -0.38
USP4-204ENST00000416417 RFX1P22670 979 aa12.71□□□□□ -0.38
USP4-204ENST00000416417 CACNB1Q02641 598 aaPredicted RBP12.71□□□□□ -0.38
USP4-204ENST00000416417 CREMQ03060 361 aa12.71□□□□□ -0.38
USP4-204ENST00000416417 HTR4Q13639 388 aa12.71□□□□□ -0.38
USP4-204ENST00000416417 PDIA5Q14554 519 aa12.71□□□□□ -0.38
USP4-204ENST00000416417 ZNF568Q3ZCX4 644 aa12.71□□□□□ -0.38
USP4-204ENST00000416417 AXDND1Q5T1B0 1012 aaPredicted RBP12.71□□□□□ -0.38
USP4-204ENST00000416417 KRT79Q5XKE5 535 aa12.71□□□□□ -0.38
USP4-204ENST00000416417 RINT1Q6NUQ1 792 aa12.71□□□□□ -0.38
USP4-204ENST00000416417 GPR65Q8IYL9 337 aa12.71□□□□□ -0.38
USP4-204ENST00000416417 DTWD2Q8NBA8 298 aa12.71□□□□□ -0.38
USP4-204ENST00000416417 ING5Q8WYH8 240 aa12.71□□□□□ -0.38
USP4-204ENST00000416417 FGF14Q92915 247 aa12.71□□□□□ -0.38
USP4-204ENST00000416417 C18orf25Q96B23 403 aaPredicted RBP12.71□□□□□ -0.38
USP4-204ENST00000416417 TBC1D17Q9HA65 648 aa12.71□□□□□ -0.38
USP4-204ENST00000416417 KMT5AQ9NQR1 393 aa12.71□□□□□ -0.38
USP4-204ENST00000416417 DNM3Q9UQ16 869 aa12.71□□□□□ -0.38
USP4-204ENST00000416417 TNFSF13BQ9Y275 285 aa12.71□□□□□ -0.38
USP4-204ENST00000416417 CDY1Q9Y6F8 540 aa12.71□□□□□ -0.38
USP4-204ENST00000416417 MYO15AQ9UKN7 3530 aa12.71□□□□□ -0.38
USP4-204ENST00000416417 ANHXE9PGG2 379 aa12.7□□□□□ -0.38
USP4-204ENST00000416417 ST18O60284 1047 aa12.7□□□□□ -0.38
USP4-204ENST00000416417 EIF5BO60841 1220 aaKnown RBP12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms