RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 TCF25Q9BQ70 676 aa5.82□□□□□ -1.48
VPS54-204ENST00000416400 PLA2G12BQ9BX93 195 aa5.82□□□□□ -1.48
VPS54-204ENST00000416400 MANSC1Q9H8J5 431 aa5.82□□□□□ -1.48
VPS54-204ENST00000416400 TDP1Q9NUW8 608 aa5.82□□□□□ -1.48
VPS54-204ENST00000416400 ING3Q9NXR8 418 aa5.82□□□□□ -1.48
VPS54-204ENST00000416400 ZFR2Q9UPR6 939 aaKnown RBP5.82□□□□□ -1.48
VPS54-204ENST00000416400 NR2E3Q9Y5X4 410 aa5.82□□□□□ -1.48
VPS54-204ENST00000416400 CAPN8A6NHC0 703 aa5.81□□□□□ -1.48
VPS54-204ENST00000416400 FOXD2O60548 495 aaPredicted RBP5.81□□□□□ -1.48
VPS54-204ENST00000416400 GYPEP15421 78 aa5.81□□□□□ -1.48
VPS54-204ENST00000416400 ADSLP30566 484 aaPredicted RBP5.81□□□□□ -1.48
VPS54-204ENST00000416400 MAP2K6P52564 334 aa5.81□□□□□ -1.48
VPS54-204ENST00000416400 AGFG1P52594 562 aaKnown RBP5.81□□□□□ -1.48
VPS54-204ENST00000416400 PER3P56645 1201 aa5.81□□□□□ -1.48
VPS54-204ENST00000416400 DSC2Q02487 901 aa5.81□□□□□ -1.48
VPS54-204ENST00000416400 SAFB2Q14151 953 aaKnown RBP eCLIP5.81□□□□□ -1.48
VPS54-204ENST00000416400 GRM7Q14831 915 aa5.81□□□□□ -1.48
VPS54-204ENST00000416400 ACAP1Q15027 740 aa5.81□□□□□ -1.48
VPS54-204ENST00000416400 LONRF3Q496Y0 759 aa5.81□□□□□ -1.48
VPS54-204ENST00000416400 ABHD15Q6UXT9 468 aa5.81□□□□□ -1.48
VPS54-204ENST00000416400 KLHDC4Q8TBB5 520 aa5.81□□□□□ -1.48
VPS54-204ENST00000416400 NSUN6Q8TEA1 469 aaKnown RBP5.81□□□□□ -1.48
VPS54-204ENST00000416400 ZNF480Q8WV37 535 aa5.81□□□□□ -1.48
VPS54-204ENST00000416400 CFHR4Q92496 578 aa5.81□□□□□ -1.48
VPS54-204ENST00000416400 HOXB13Q92826 284 aaPredicted RBP5.81□□□□□ -1.48
VPS54-204ENST00000416400 TMEM176AQ96HP8 235 aa5.81□□□□□ -1.48
VPS54-204ENST00000416400 CDK5RAP3Q96JB5 506 aa5.81□□□□□ -1.48
VPS54-204ENST00000416400 ELAC2Q9BQ52 826 aaKnown RBP5.81□□□□□ -1.48
VPS54-204ENST00000416400 LRFN3Q9BTN0 628 aa5.81□□□□□ -1.48
VPS54-204ENST00000416400 MEGF9Q9H1U4 602 aa5.81□□□□□ -1.48
VPS54-204ENST00000416400 DEF6Q9H4E7 631 aa5.81□□□□□ -1.48
VPS54-204ENST00000416400 IL23AQ9NPF7 189 aa5.81□□□□□ -1.48
VPS54-204ENST00000416400 TLR9Q9NR96 1032 aa5.81□□□□□ -1.48
VPS54-204ENST00000416400 CNOT11Q9UKZ1 510 aaKnown RBP5.81□□□□□ -1.48
VPS54-204ENST00000416400 PHTF1Q9UMS5 762 aa5.81□□□□□ -1.48
VPS54-204ENST00000416400 UBE2QL1A1L167 161 aa5.8□□□□□ -1.48
VPS54-204ENST00000416400 GOLIM4O00461 696 aa5.8□□□□□ -1.48
VPS54-204ENST00000416400 PQBP1O60828 265 aaKnown RBP5.8□□□□□ -1.48
VPS54-204ENST00000416400 RAD17O75943 681 aa5.8□□□□□ -1.48
VPS54-204ENST00000416400 MYL3P08590 195 aa5.8□□□□□ -1.48
VPS54-204ENST00000416400 CDC42EP1Q00587 391 aa5.8□□□□□ -1.48
VPS54-204ENST00000416400 SEMA5AQ13591 1074 aa5.8□□□□□ -1.48
VPS54-204ENST00000416400 CNN3Q15417 329 aaKnown RBP5.8□□□□□ -1.48
VPS54-204ENST00000416400 C19orf54Q5BKX5 351 aa5.8□□□□□ -1.48
VPS54-204ENST00000416400 PDZD4Q76G19 769 aaPredicted RBP5.8□□□□□ -1.48
VPS54-204ENST00000416400 MSL3Q8N5Y2 521 aaKnown RBP5.8□□□□□ -1.48
VPS54-204ENST00000416400 TNIP3Q96KP6 325 aa5.8□□□□□ -1.48
VPS54-204ENST00000416400 UHRF1Q96T88 793 aaPredicted RBP5.8□□□□□ -1.48
VPS54-204ENST00000416400 GPHA2Q96T91 129 aa5.8□□□□□ -1.48
VPS54-204ENST00000416400 CDC5LQ99459 802 aaKnown RBP5.8□□□□□ -1.48
VPS54-204ENST00000416400 L1RE1Q9UN81 338 aa5.8□□□□□ -1.48
VPS54-204ENST00000416400 PCDHB1Q9Y5F3 818 aa5.8□□□□□ -1.48
VPS54-204ENST00000416400 PCDHGB6Q9Y5F9 930 aa5.8□□□□□ -1.48
VPS54-204ENST00000416400 MATN2O00339 956 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 MGEA5O60502 916 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 PEX2P28328 305 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 SLC6A9P48067 706 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 ZNF280AP59817 542 aaPredicted RBP5.79□□□□□ -1.48
VPS54-204ENST00000416400 RAB1AP62820 205 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 NOGQ13253 232 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 MORC3Q14149 939 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 RNF220Q5VTB9 566 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 MFSD5Q6N075 450 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 TCTN3Q6NUS6 607 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 FAM111BQ6SJ93 734 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 Q6ZVL8 140 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 MAEAQ7L5Y9 396 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 POLNQ7Z5Q5 900 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 ADGRE4PQ86SQ3 457 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 RSPH3Q86UC2 560 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 MORC1Q86VD1 984 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 GPR135Q8IZ08 494 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 D2HGDHQ8N465 521 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 C3orf20Q8ND61 904 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 PARD3BQ8TEW8 1205 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 RAB24Q969Q5 203 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 MTFMTQ96DP5 389 aaKnown RBP5.79□□□□□ -1.48
VPS54-204ENST00000416400 FAM89AQ96GI7 184 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 CLPTM1LQ96KA5 538 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 SAMD11Q96NU1 681 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 BHMT2Q9H2M3 363 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 BCO1Q9HAY6 547 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 KLHL11Q9NVR0 708 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 PLA2G3Q9NZ20 509 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 POLHQ9Y253 713 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 TCAF1Q9Y4C2 921 aa5.79□□□□□ -1.48
VPS54-204ENST00000416400 GPR42O15529 346 aa5.78□□□□□ -1.48
VPS54-204ENST00000416400 ZNF623O75123 536 aa5.78□□□□□ -1.48
VPS54-204ENST00000416400 ARIH2O95376 493 aa5.78□□□□□ -1.48
VPS54-204ENST00000416400 GASTP01350 101 aa5.78□□□□□ -1.48
VPS54-204ENST00000416400 SLC5A1P13866 664 aa5.78□□□□□ -1.48
VPS54-204ENST00000416400 MSX2P35548 267 aaPredicted RBP5.78□□□□□ -1.48
VPS54-204ENST00000416400 CASRP41180 1078 aa5.78□□□□□ -1.48
VPS54-204ENST00000416400 HTR3AP46098 478 aa5.78□□□□□ -1.48
VPS54-204ENST00000416400 HK3P52790 923 aa5.78□□□□□ -1.48
VPS54-204ENST00000416400 GPSM2P81274 684 aa5.78□□□□□ -1.48
VPS54-204ENST00000416400 LONRF1Q17RB8 773 aa5.78□□□□□ -1.48
VPS54-204ENST00000416400 SGMS1Q86VZ5 419 aa5.78□□□□□ -1.48
VPS54-204ENST00000416400 FUKQ8N0W3 1084 aa5.78□□□□□ -1.48
VPS54-204ENST00000416400 SPICE1Q8N0Z3 855 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms