RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 MSH2P43246 934 aa22.42■■□□□ 1.18
CTCF-202ENST00000401394 PRELPP51888 382 aa22.42■■□□□ 1.18
CTCF-202ENST00000401394 FASTKD3Q14CZ7 662 aaKnown RBP22.42■■□□□ 1.18
CTCF-202ENST00000401394 TMED2Q15363 201 aa22.42■■□□□ 1.18
CTCF-202ENST00000401394 ZNF568Q3ZCX4 644 aa22.42■■□□□ 1.18
CTCF-202ENST00000401394 CDAN1Q8IWY9 1227 aa22.42■■□□□ 1.18
CTCF-202ENST00000401394 IL31RAQ8NI17 732 aa22.42■■□□□ 1.18
CTCF-202ENST00000401394 HOMER3Q9NSC5 361 aa22.42■■□□□ 1.18
CTCF-202ENST00000401394 TAF1LQ8IZX4 1826 aa22.42■■□□□ 1.18
CTCF-202ENST00000401394 SUN1O94901 812 aa22.41■■□□□ 1.18
CTCF-202ENST00000401394 RWDD2BP57060 319 aa22.41■■□□□ 1.18
CTCF-202ENST00000401394 WDR4P57081 412 aaKnown RBP22.41■■□□□ 1.18
CTCF-202ENST00000401394 SCARA3Q6AZY7 606 aa22.41■■□□□ 1.18
CTCF-202ENST00000401394 ZNF449Q6P9G9 518 aa22.41■■□□□ 1.18
CTCF-202ENST00000401394 PASD1Q8IV76 773 aa22.41■■□□□ 1.18
CTCF-202ENST00000401394 TAS1R2Q8TE23 839 aa22.41■■□□□ 1.18
CTCF-202ENST00000401394 P3H4Q92791 437 aa22.41■■□□□ 1.18
CTCF-202ENST00000401394 ACSF2Q96CM8 615 aaPredicted RBP22.41■■□□□ 1.18
CTCF-202ENST00000401394 MKNK1Q9BUB5 465 aa22.41■■□□□ 1.18
CTCF-202ENST00000401394 CCDC134Q9H6E4 229 aa22.41■■□□□ 1.18
CTCF-202ENST00000401394 MTUS1Q9ULD2 1270 aa22.41■■□□□ 1.18
CTCF-202ENST00000401394 GRID1Q9ULK0 1009 aa22.41■■□□□ 1.18
CTCF-202ENST00000401394 COL24A1Q17RW2 1714 aa22.41■■□□□ 1.18
CTCF-202ENST00000401394 BBOX1O75936 387 aa22.41■■□□□ 1.18
CTCF-202ENST00000401394 GSTA1P08263 222 aa22.41■■□□□ 1.18
CTCF-202ENST00000401394 KRT5P13647 590 aa22.41■■□□□ 1.18
CTCF-202ENST00000401394 CYP11B1P15538 503 aa22.41■■□□□ 1.18
CTCF-202ENST00000401394 C4orf33Q8N1A6 199 aa22.41■■□□□ 1.18
CTCF-202ENST00000401394 SPDL1Q96EA4 605 aa22.41■■□□□ 1.18
CTCF-202ENST00000401394 NYAP2Q9P242 653 aa22.41■■□□□ 1.18
CTCF-202ENST00000401394 HAO1Q9UJM8 370 aa22.41■■□□□ 1.18
CTCF-202ENST00000401394 TTC4O95801 387 aa22.41■■□□□ 1.18
CTCF-202ENST00000401394 MXI1P50539 228 aa22.41■■□□□ 1.18
CTCF-202ENST00000401394 ZNF131P52739 623 aa22.41■■□□□ 1.18
CTCF-202ENST00000401394 SPP2Q13103 211 aa22.41■■□□□ 1.18
CTCF-202ENST00000401394 TEX2Q8IWB9 1127 aa22.41■■□□□ 1.18
CTCF-202ENST00000401394 CKAP2Q8WWK9 683 aa22.41■■□□□ 1.18
CTCF-202ENST00000401394 RSRC1Q96IZ7 334 aaKnown RBP22.41■■□□□ 1.18
CTCF-202ENST00000401394 WDR11Q9BZH6 1224 aa22.41■■□□□ 1.18
CTCF-202ENST00000401394 NSRP1Q9H0G5 558 aaKnown RBP22.41■■□□□ 1.18
CTCF-202ENST00000401394 GM2AP17900 193 aa22.4■■□□□ 1.18
CTCF-202ENST00000401394 MMP14P50281 582 aa22.4■■□□□ 1.18
CTCF-202ENST00000401394 PEX3P56589 373 aa22.4■■□□□ 1.18
CTCF-202ENST00000401394 RHBDF2Q6PJF5 856 aa22.4■■□□□ 1.18
CTCF-202ENST00000401394 MICAL1Q8TDZ2 1067 aa22.4■■□□□ 1.18
CTCF-202ENST00000401394 MYLK2Q9H1R3 596 aa22.4■■□□□ 1.18
CTCF-202ENST00000401394 USTQ9Y2C2 406 aa22.4■■□□□ 1.18
CTCF-202ENST00000401394 NUMBLQ9Y6R0 609 aa22.4■■□□□ 1.18
CTCF-202ENST00000401394 PI4K2BG5E9Z4 385 aa22.4■■□□□ 1.18
CTCF-202ENST00000401394 TCF4P15884 667 aa22.4■■□□□ 1.18
CTCF-202ENST00000401394 ABL2P42684 1182 aa22.4■■□□□ 1.18
CTCF-202ENST00000401394 SSR1P43307 286 aaKnown RBP22.4■■□□□ 1.18
CTCF-202ENST00000401394 SPDYCQ5MJ68 293 aa22.4■■□□□ 1.18
CTCF-202ENST00000401394 PLA2G4FQ68DD2 849 aa22.4■■□□□ 1.18
CTCF-202ENST00000401394 WNT8AQ9H1J5 351 aa22.4■■□□□ 1.18
CTCF-202ENST00000401394 C10orf88Q9H8K7 445 aa22.4■■□□□ 1.18
CTCF-202ENST00000401394 SLTMQ9NWH9 1034 aaKnown RBP eCLIP22.4■■□□□ 1.18
CTCF-202ENST00000401394 KIF13BQ9NQT8 1826 aa22.39■■□□□ 1.18
CTCF-202ENST00000401394 SORBS3O60504 671 aa22.39■■□□□ 1.18
CTCF-202ENST00000401394 CD58P19256 250 aa22.39■■□□□ 1.18
CTCF-202ENST00000401394 MFSD5Q6N075 450 aa22.39■■□□□ 1.18
CTCF-202ENST00000401394 GLIS2Q9BZE0 524 aaPredicted RBP22.39■■□□□ 1.18
CTCF-202ENST00000401394 COA1Q9GZY4 146 aa22.39■■□□□ 1.18
CTCF-202ENST00000401394 POC1B-GALNT4F8VUJ3 575 aa22.39■■□□□ 1.17
CTCF-202ENST00000401394 IPO5O00410 1097 aaKnown RBP22.39■■□□□ 1.17
CTCF-202ENST00000401394 CBX6O95503 412 aa22.39■■□□□ 1.17
CTCF-202ENST00000401394 RALAP11233 206 aa22.39■■□□□ 1.17
CTCF-202ENST00000401394 FGFR1P11362 822 aa22.39■■□□□ 1.17
CTCF-202ENST00000401394 ITGB5P18084 799 aa22.39■■□□□ 1.17
CTCF-202ENST00000401394 TAC1P20366 129 aa22.39■■□□□ 1.17
CTCF-202ENST00000401394 ADSSP30520 456 aa22.39■■□□□ 1.17
CTCF-202ENST00000401394 ERFP50548 548 aa22.39■■□□□ 1.17
CTCF-202ENST00000401394 DGKZQ13574 1117 aa22.39■■□□□ 1.17
CTCF-202ENST00000401394 SLC15A2Q16348 729 aa22.39■■□□□ 1.17
CTCF-202ENST00000401394 CYP1B1Q16678 543 aa22.39■■□□□ 1.17
CTCF-202ENST00000401394 FAM71AQ8IYT1 594 aa22.39■■□□□ 1.17
CTCF-202ENST00000401394 ERP27Q96DN0 273 aa22.39■■□□□ 1.17
CTCF-202ENST00000401394 CCDC17Q96LX7 622 aa22.39■■□□□ 1.17
CTCF-202ENST00000401394 NACC1Q96RE7 527 aa22.39■■□□□ 1.17
CTCF-202ENST00000401394 PI4KBQ9UBF8 816 aa22.39■■□□□ 1.17
CTCF-202ENST00000401394 EME2A4GXA9 379 aaPredicted RBP22.38■■□□□ 1.17
CTCF-202ENST00000401394 PPP2R5EQ16537 467 aa22.38■■□□□ 1.17
CTCF-202ENST00000401394 CEP55Q53EZ4 464 aa22.38■■□□□ 1.17
CTCF-202ENST00000401394 KAZNQ674X7 775 aa22.38■■□□□ 1.17
CTCF-202ENST00000401394 CERKQ8TCT0 537 aa22.38■■□□□ 1.17
CTCF-202ENST00000401394 HAUS1Q96CS2 278 aa22.38■■□□□ 1.17
CTCF-202ENST00000401394 RPS6KC1Q96S38 1066 aa22.38■■□□□ 1.17
CTCF-202ENST00000401394 GLT8D2Q9H1C3 349 aa22.38■■□□□ 1.17
CTCF-202ENST00000401394 ARHGEF3Q9NR81 526 aa22.38■■□□□ 1.17
CTCF-202ENST00000401394 ANAPC5Q9UJX4 755 aa22.38■■□□□ 1.17
CTCF-202ENST00000401394 A0A1B0GUA9 196 aa22.38■■□□□ 1.17
CTCF-202ENST00000401394 FOSP01100 380 aaPredicted RBP22.38■■□□□ 1.17
CTCF-202ENST00000401394 UGCGQ16739 394 aa22.38■■□□□ 1.17
CTCF-202ENST00000401394 BTNL9Q6UXG8 535 aa22.38■■□□□ 1.17
CTCF-202ENST00000401394 TUFT1Q9NNX1 390 aa22.38■■□□□ 1.17
CTCF-202ENST00000401394 PRKAG3Q9UGI9 489 aa22.38■■□□□ 1.17
CTCF-202ENST00000401394 ARL2BPQ9Y2Y0 163 aa22.38■■□□□ 1.17
CTCF-202ENST00000401394 ZNF831Q5JPB2 1677 aa22.38■■□□□ 1.17
CTCF-202ENST00000401394 WDR91A4D1P6 747 aa22.38■■□□□ 1.17
CTCF-202ENST00000401394 GRIN3BO60391 1043 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms