RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 GPR37O15354 613 aa7.02□□□□□ -1.28
TM9SF4-202ENST00000398022 PRPF3O43395 683 aaKnown RBP7.02□□□□□ -1.28
TM9SF4-202ENST00000398022 DGKIO75912 1065 aa7.02□□□□□ -1.28
TM9SF4-202ENST00000398022 TBC1D8O95759 1140 aa7.02□□□□□ -1.28
TM9SF4-202ENST00000398022 CTAGE8P0CG41 777 aa7.02□□□□□ -1.28
TM9SF4-202ENST00000398022 EPB41P11171 864 aaKnown RBP7.02□□□□□ -1.28
TM9SF4-202ENST00000398022 PRKACBP22694 351 aa7.02□□□□□ -1.28
TM9SF4-202ENST00000398022 CLUL1Q15846 466 aa7.02□□□□□ -1.28
TM9SF4-202ENST00000398022 CAPN12Q6ZSI9 719 aa7.02□□□□□ -1.28
TM9SF4-202ENST00000398022 SLC9B2Q86UD5 537 aa7.02□□□□□ -1.28
TM9SF4-202ENST00000398022 CTAGE6Q86UF2 777 aa7.02□□□□□ -1.28
TM9SF4-202ENST00000398022 TMTC1Q8IUR5 882 aa7.02□□□□□ -1.28
TM9SF4-202ENST00000398022 TMEM139Q8IV31 216 aa7.02□□□□□ -1.28
TM9SF4-202ENST00000398022 CTAGE4Q8IX94 777 aa7.02□□□□□ -1.28
TM9SF4-202ENST00000398022 FERMT2Q96AC1 680 aa7.02□□□□□ -1.28
TM9SF4-202ENST00000398022 STRBPQ96SI9 672 aaKnown RBP7.02□□□□□ -1.28
TM9SF4-202ENST00000398022 ZPBPQ9BS86 351 aa7.02□□□□□ -1.28
TM9SF4-202ENST00000398022 STMN4Q9H169 189 aaPredicted RBP7.02□□□□□ -1.28
TM9SF4-202ENST00000398022 SCPEP1Q9HB40 452 aa7.02□□□□□ -1.28
TM9SF4-202ENST00000398022 CRLF2Q9HC73 371 aa7.02□□□□□ -1.28
TM9SF4-202ENST00000398022 RTL9Q8NET4 1388 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 TRIM43BA6NCK2 446 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 GARTP22102 1010 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 PICALMQ13492 652 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 SEPT6Q14141 434 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 TRIM14Q14142 442 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 NR1I3Q14994 352 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 FAM26DQ5JW98 314 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 ZNF569Q5MCW4 686 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 GALNT13Q8IUC8 556 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 FOXP4Q8IVH2 680 aaPredicted RBP7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 CPLX3Q8WVH0 158 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 HERVK_113Q902F9 699 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 TSC22D3Q99576 134 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 CIDEBQ9UHD4 219 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 EIF2B4Q9UI10 523 aaKnown RBP7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 PTBP2Q9UKA9 531 aaKnown RBP7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 KCNJ14Q9UNX9 436 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 PSME4Q14997 1843 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 SZT2Q5T011 3432 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 CCDC162PA2VCL2 907 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 VWA5AO00534 786 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 CBFA2T3O75081 653 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 PDE8BO95263 885 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 ADH7P40394 386 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 SULT1E1P49888 294 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 NIPAL4Q0D2K0 466 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 MAPRE2Q15555 327 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 HECTD3Q5T447 861 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 SLC2A7Q6PXP3 512 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 OTOP3Q7RTS5 596 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 GATAD2AQ86YP4 633 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 NCLNQ969V3 563 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 LPIN3Q9BQK8 851 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 NUDT16L1Q9BRJ7 211 aaKnown RBP7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 SAMSN1Q9NSI8 373 aaKnown RBP7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 INTS13Q9NVM9 706 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 ZSWIM5Q9P217 1185 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 ATXN10Q9UBB4 475 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 MYO1AQ9UBC5 1043 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 RASAL2Q9UJF2 1139 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 GIT1Q9Y2X7 761 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 DDX60Q8IY21 1712 aaKnown RBP7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 MYH7P12883 1935 aa7.02□□□□□ -1.29
TM9SF4-202ENST00000398022 OR6C65A6NJZ3 312 aa7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 N4BP3O15049 544 aa7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 P4HA1P13674 534 aa7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 POU3F3P20264 500 aaPredicted RBP7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 ALAS2P22557 587 aa7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 CTSWP56202 376 aa7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 FMR1Q06787 632 aaKnown RBP eCLIP7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 PTPN21Q16825 1174 aa7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 WHAMMP3Q1A5X7 153 aa7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 INSCQ1MX18 579 aa7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 FBXO43Q4G163 708 aa7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 ZBTB41Q5SVQ8 909 aa7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 C8orf74Q6P047 294 aa7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 MAGEB6Q8N7X4 407 aa7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 SUPT20HQ8NEM7 779 aa7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 DIS3LQ8TF46 1054 aaKnown RBP7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 NAPGQ99747 312 aaPredicted RBP7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 TSEN34Q9BSV6 310 aaKnown RBP7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 ACAD9Q9H845 621 aa7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 CABP5Q9NP86 173 aa7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 PIH1D3Q9NQM4 214 aaKnown RBP7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 ARHGAP28Q9P2N2 729 aa7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 TRMT112Q9UI30 125 aaKnown RBP7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 IRS4O14654 1257 aaPredicted RBP7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 FOXN1O15353 648 aa7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 POP4O95707 220 aaKnown RBP7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 STMN1P16949 149 aa7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 KRT2P35908 639 aa7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 ADCY8P40145 1251 aa7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 AFMP43652 599 aa7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 GPC3P51654 580 aa7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 CCNA1P78396 465 aa7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 PPA1Q15181 289 aa7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 INTS11Q5TA45 600 aaKnown RBP7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 FAM47EQ6ZV65 393 aa7.01□□□□□ -1.29
TM9SF4-202ENST00000398022 SIX5Q8N196 739 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms