RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 GGCXP38435 758 aa11.96□□□□□ -0.49
TCOF1-203ENST00000394269 PPIL2Q13356 520 aa11.96□□□□□ -0.49
TCOF1-203ENST00000394269 EFCAB12Q6NXP0 572 aa11.96□□□□□ -0.49
TCOF1-203ENST00000394269 KRT35Q92764 455 aa11.96□□□□□ -0.49
TCOF1-203ENST00000394269 ACBD3Q9H3P7 528 aa11.96□□□□□ -0.49
TCOF1-203ENST00000394269 TAF1DQ9H5J8 278 aaPredicted RBP11.96□□□□□ -0.49
TCOF1-203ENST00000394269 FAM53CQ9NYF3 392 aa11.96□□□□□ -0.49
TCOF1-203ENST00000394269 CCL15-CCL14A0A0B4J2E2 113 aa11.96□□□□□ -0.5
TCOF1-203ENST00000394269 TARSL2A2RTX5 802 aaKnown RBP11.96□□□□□ -0.5
TCOF1-203ENST00000394269 ATG7O95352 703 aa11.96□□□□□ -0.5
TCOF1-203ENST00000394269 FAM153BP0C7A2 387 aa11.96□□□□□ -0.5
TCOF1-203ENST00000394269 ZNF286BP0CG31 522 aa11.96□□□□□ -0.5
TCOF1-203ENST00000394269 TGFB3P10600 412 aa11.96□□□□□ -0.5
TCOF1-203ENST00000394269 ARL2P36404 184 aa11.96□□□□□ -0.5
TCOF1-203ENST00000394269 MAPK6Q16659 721 aa11.96□□□□□ -0.5
TCOF1-203ENST00000394269 CCL15Q16663 113 aa11.96□□□□□ -0.5
TCOF1-203ENST00000394269 FAM153CQ494X1 144 aa11.96□□□□□ -0.5
TCOF1-203ENST00000394269 CELF3Q5SZQ8 465 aaKnown RBP11.96□□□□□ -0.5
TCOF1-203ENST00000394269 IFT20Q8IY31 132 aa11.96□□□□□ -0.5
TCOF1-203ENST00000394269 RUFY1Q96T51 708 aa11.96□□□□□ -0.5
TCOF1-203ENST00000394269 NXF1Q9UBU9 619 aaKnown RBP11.96□□□□□ -0.5
TCOF1-203ENST00000394269 FAM153AQ9UHL3 310 aa11.96□□□□□ -0.5
TCOF1-203ENST00000394269 COL11A1P12107 1806 aaPredicted RBP11.96□□□□□ -0.5
TCOF1-203ENST00000394269 UMODL1Q5DID0 1318 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 COMTP21964 271 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 SNRPFP62306 86 aaKnown RBP11.95□□□□□ -0.5
TCOF1-203ENST00000394269 FMO1Q01740 532 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 SHC3Q92529 594 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 HVCN1Q96D96 273 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.95□□□□□ -0.51e-6■□□□□ 9.7
TCOF1-203ENST00000394269 TRIM7Q9C029 511 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 MTMR12Q9C0I1 747 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 CNOT8Q9UFF9 292 aaKnown RBP11.95□□□□□ -0.5
TCOF1-203ENST00000394269 AKT3Q9Y243 479 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 LAMA2P24043 3122 aaKnown RBP11.95□□□□□ -0.5
TCOF1-203ENST00000394269 PHIPQ8WWQ0 1821 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 GOLGA6BA6NDN3 693 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 ADCY3O60266 1144 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 CST3P01034 146 aaPredicted RBP11.95□□□□□ -0.5
TCOF1-203ENST00000394269 CFHP08603 1231 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 ADORA2AP29274 412 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 GPC3P51654 580 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 TMEM62Q0P6H9 643 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 TTLL4Q14679 1199 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 CRELD2Q6UXH1 353 aaPredicted RBP11.95□□□□□ -0.5
TCOF1-203ENST00000394269 ARMCX2Q7L311 632 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 FMNL3Q8IVF7 1028 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 ZBTB8OSQ8IWT0 167 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 GPRC5AQ8NFJ5 357 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 TMC2Q8TDI7 906 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 ALG3Q92685 438 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 PBKQ96KB5 322 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 IMPG2Q9BZV3 1241 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 USTQ9Y2C2 406 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 RTN2O75298 545 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 PRKCBP05771 671 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 WEE2P0C1S8 567 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 RFX1P22670 979 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 ADCYAP1R1P41586 468 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 SLFN12LQ6IEE8 588 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 ZNF564Q8TBZ8 553 aaPredicted RBP11.95□□□□□ -0.5
TCOF1-203ENST00000394269 CYFIP2Q96F07 1278 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 RNPC3Q96LT9 517 aaKnown RBP11.95□□□□□ -0.5
TCOF1-203ENST00000394269 FBXL18Q96ME1 805 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 RNF14Q9UBS8 474 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 ADAM21Q9UKJ8 722 aa11.95□□□□□ -0.5
TCOF1-203ENST00000394269 GLTPD2A6NH11 291 aa11.94□□□□□ -0.5
TCOF1-203ENST00000394269 TTI1O43156 1089 aa11.94□□□□□ -0.5
TCOF1-203ENST00000394269 GJB6O95452 261 aa11.94□□□□□ -0.5
TCOF1-203ENST00000394269 TRPC3Q13507 836 aa11.94□□□□□ -0.5
TCOF1-203ENST00000394269 NCOA4Q13772 614 aa11.94□□□□□ -0.5
TCOF1-203ENST00000394269 PLCB4Q15147 1175 aa11.94□□□□□ -0.5
TCOF1-203ENST00000394269 GPAT2Q6NUI2 795 aa11.94□□□□□ -0.5
TCOF1-203ENST00000394269 OLIG1Q8TAK6 271 aa11.94□□□□□ -0.5
TCOF1-203ENST00000394269 AFG1LQ8WV93 481 aa11.94□□□□□ -0.5
TCOF1-203ENST00000394269 CEP89Q96ST8 783 aa11.94□□□□□ -0.5
TCOF1-203ENST00000394269 C11orf70Q9BRQ4 267 aa11.94□□□□□ -0.5
TCOF1-203ENST00000394269 NIFKQ9BYG3 293 aaKnown RBP11.94□□□□□ -0.5
TCOF1-203ENST00000394269 RABEP2Q9H5N1 569 aa11.94□□□□□ -0.5
TCOF1-203ENST00000394269 RNF19AQ9NV58 838 aa11.94□□□□□ -0.5
TCOF1-203ENST00000394269 NOCTQ9UK39 431 aaKnown RBP11.94□□□□□ -0.5
TCOF1-203ENST00000394269 HPCAL4Q9UM19 191 aa11.94□□□□□ -0.5
TCOF1-203ENST00000394269 KIAA1217Q5T5P2 1943 aa11.94□□□□□ -0.5
TCOF1-203ENST00000394269 DOCK1Q14185 1865 aa11.94□□□□□ -0.5
TCOF1-203ENST00000394269 MAFO75444 373 aaPredicted RBP11.94□□□□□ -0.5
TCOF1-203ENST00000394269 VTNP04004 478 aa11.94□□□□□ -0.5
TCOF1-203ENST00000394269 EDNRBP24530 442 aa11.94□□□□□ -0.5
TCOF1-203ENST00000394269 CDR1P51861 262 aa11.94□□□□□ -0.5
TCOF1-203ENST00000394269 ORC1Q13415 861 aa11.94□□□□□ -0.5
TCOF1-203ENST00000394269 KCTD16Q68DU8 428 aa11.94□□□□□ -0.5
TCOF1-203ENST00000394269 CASKIN2Q8WXE0 1202 aa11.94□□□□□ -0.5
TCOF1-203ENST00000394269 BBXQ8WY36 941 aaPredicted RBP11.94□□□□□ -0.5
TCOF1-203ENST00000394269 FGD4Q96M96 766 aa11.94□□□□□ -0.5
TCOF1-203ENST00000394269 PTPN22Q9Y2R2 807 aa11.94□□□□□ -0.5
TCOF1-203ENST00000394269 THAP12O43422 761 aa11.93□□□□□ -0.5
TCOF1-203ENST00000394269 RFC5P40937 340 aa11.93□□□□□ -0.5
TCOF1-203ENST00000394269 RTP1P59025 263 aa11.93□□□□□ -0.5
TCOF1-203ENST00000394269 NOP14P78316 857 aaKnown RBP11.93□□□□□ -0.5
TCOF1-203ENST00000394269 CDR2Q01850 454 aa11.93□□□□□ -0.5
TCOF1-203ENST00000394269 GABPB1Q06547 395 aaPredicted RBP11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms