RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 C11orf63Q6NUN7 778 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 ADAT2Q7Z6V5 191 aaKnown RBP10.34□□□□□ -0.75
COL6A3-204ENST00000392003 VSIG10LQ86VR7 867 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 TMEM161BQ8NDZ6 487 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 FBXL13Q8NEE6 735 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 TMC2Q8TDI7 906 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 BCAS4Q8TDM0 211 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 SPIRE2Q8WWL2 714 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 CD248Q9HCU0 757 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 MTUS1Q9ULD2 1270 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.34□□□□□ -0.75
COL6A3-204ENST00000392003 ENO4A6NNW6 628 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 EBAG9O00559 213 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 DDX3YO15523 660 aaKnown RBP10.34□□□□□ -0.75
COL6A3-204ENST00000392003 ADRB2P07550 413 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 KRT5P13647 590 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 ATP1A2P50993 1020 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 KLRG1Q96E93 195 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 ATP6V1G3Q96LB4 118 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 SLX1AQ9BQ83 275 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 PLVAPQ9BX97 442 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 ACAD9Q9H845 621 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 SEPT9Q9UHD8 586 aaPredicted RBP10.34□□□□□ -0.75
COL6A3-204ENST00000392003 FAM187AA6NFU0 413 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 ZNF233A6NK53 670 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 ANKRD63C9JTQ0 380 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 DGAT1O75907 488 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 CPP00450 1065 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 DLATP10515 647 aaKnown RBP10.34□□□□□ -0.75
COL6A3-204ENST00000392003 NR1D1P20393 614 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 DSG3P32926 999 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 GCKP35557 465 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 HADHBP55084 474 aaKnown RBP10.34□□□□□ -0.75
COL6A3-204ENST00000392003 SKOR1P84550 965 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 IFFO1Q0D2I5 559 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 ODF2Q5BJF6 829 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 SWSAP1Q6NVH7 229 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 PALB2Q86YC2 1186 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 SH2D3CQ8N5H7 860 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 ZNF653Q96CK0 615 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 KIFC3Q9BVG8 833 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 RIPK3Q9Y572 518 aa10.34□□□□□ -0.75
COL6A3-204ENST00000392003 RBBP6Q7Z6E9 1792 aaKnown RBP10.33□□□□□ -0.76
COL6A3-204ENST00000392003 EIF3HO15372 352 aaKnown RBP eCLIP10.33□□□□□ -0.76
COL6A3-204ENST00000392003 ZEB2O60315 1214 aa10.33□□□□□ -0.76
COL6A3-204ENST00000392003 HSD17B3P37058 310 aa10.33□□□□□ -0.76
COL6A3-204ENST00000392003 IREB2P48200 963 aaKnown RBP10.33□□□□□ -0.76
COL6A3-204ENST00000392003 CDR1P51861 262 aa10.33□□□□□ -0.76
COL6A3-204ENST00000392003 PTENP60484 403 aa10.33□□□□□ -0.76
COL6A3-204ENST00000392003 DHX34Q14147 1143 aaKnown RBP10.33□□□□□ -0.76
COL6A3-204ENST00000392003 EAPPQ56P03 285 aaPredicted RBP10.33□□□□□ -0.76
COL6A3-204ENST00000392003 DLK2Q6UY11 383 aa10.33□□□□□ -0.76
COL6A3-204ENST00000392003 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.33□□□□□ -0.76
COL6A3-204ENST00000392003 ANO5Q75V66 913 aa10.33□□□□□ -0.76
COL6A3-204ENST00000392003 NCAPG2Q86XI2 1143 aa10.33□□□□□ -0.76
COL6A3-204ENST00000392003 FAM71AQ8IYT1 594 aa10.33□□□□□ -0.76
COL6A3-204ENST00000392003 GPD1LQ8N335 351 aa10.33□□□□□ -0.76
COL6A3-204ENST00000392003 KAT5Q92993 513 aa10.33□□□□□ -0.76
COL6A3-204ENST00000392003 FAM81BQ96LP2 452 aa10.33□□□□□ -0.76
COL6A3-204ENST00000392003 RPS6KC1Q96S38 1066 aa10.33□□□□□ -0.76
COL6A3-204ENST00000392003 CELF4Q9BZC1 486 aaKnown RBP10.33□□□□□ -0.76
COL6A3-204ENST00000392003 WNT8AQ9H1J5 351 aa10.33□□□□□ -0.76
COL6A3-204ENST00000392003 RAB20Q9NX57 234 aa10.33□□□□□ -0.76
COL6A3-204ENST00000392003 PPP2R3BQ9Y5P8 575 aa10.33□□□□□ -0.76
COL6A3-204ENST00000392003 SNUPNO95149 360 aaKnown RBP10.33□□□□□ -0.76
COL6A3-204ENST00000392003 GTF2H1P32780 548 aa10.33□□□□□ -0.76
COL6A3-204ENST00000392003 OAZ1P54368 228 aa10.33□□□□□ -0.76
COL6A3-204ENST00000392003 WDR44Q5JSH3 913 aa10.33□□□□□ -0.76
COL6A3-204ENST00000392003 C1orf220Q5T0J3 134 aa10.33□□□□□ -0.76
COL6A3-204ENST00000392003 MIS18BP1Q6P0N0 1132 aa10.33□□□□□ -0.76
COL6A3-204ENST00000392003 ZSWIM2Q8NEG5 633 aa10.33□□□□□ -0.76
COL6A3-204ENST00000392003 EPS8L1Q8TE68 723 aa10.33□□□□□ -0.76
COL6A3-204ENST00000392003 OTUD5Q96G74 571 aa10.33□□□□□ -0.76
COL6A3-204ENST00000392003 WNK4Q96J92 1243 aa10.33□□□□□ -0.76
COL6A3-204ENST00000392003 FNBP1Q96RU3 617 aa10.33□□□□□ -0.76
COL6A3-204ENST00000392003 SENP7Q9BQF6 1050 aa10.33□□□□□ -0.76
COL6A3-204ENST00000392003 ATP6V0A4Q9HBG4 840 aa10.33□□□□□ -0.76
COL6A3-204ENST00000392003 ADARB2Q9NS39 739 aaKnown RBP10.33□□□□□ -0.76
COL6A3-204ENST00000392003 SPATS2LQ9NUQ6 558 aaKnown RBP10.33□□□□□ -0.76
COL6A3-204ENST00000392003 SLC9A2Q9UBY0 812 aa10.33□□□□□ -0.76
COL6A3-204ENST00000392003 CLEC11AQ9Y240 323 aa10.33□□□□□ -0.76
COL6A3-204ENST00000392003 GGPS1O95749 300 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 LIG4P49917 911 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 DHX9Q08211 1270 aaKnown RBP10.32□□□□□ -0.76
COL6A3-204ENST00000392003 STRN3Q13033 797 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 PDCLQ13371 301 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 ENOSF1Q7L5Y1 443 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 NOP9Q86U38 636 aaKnown RBP10.32□□□□□ -0.76
COL6A3-204ENST00000392003 C1orf131Q8NDD1 294 aaKnown RBP10.32□□□□□ -0.76
COL6A3-204ENST00000392003 PLEKHO2Q8TD55 490 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 SHC3Q92529 594 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 UPF1Q92900 1129 aaKnown RBP eCLIP10.32□□□□□ -0.76
COL6A3-204ENST00000392003 MAGOHBQ96A72 148 aaKnown RBP10.32□□□□□ -0.76
COL6A3-204ENST00000392003 FMO2Q99518 471 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 KIAA1586Q9HCI6 787 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 JPH1Q9HDC5 661 aaPredicted RBP10.32□□□□□ -0.76
COL6A3-204ENST00000392003 C1orf112Q9NSG2 853 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 MCM8Q9UJA3 840 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 COG5Q9UP83 839 aa10.32□□□□□ -0.76
COL6A3-204ENST00000392003 ADM5C9JUS6 153 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 131.3 ms