RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 NIPSNAP3AQ9UFN0 247 aaPredicted RBP7.78□□□□□ -1.16
VPS13A-202ENST00000357409 CFAP65Q6ZU64 1925 aaKnown RBP7.78□□□□□ -1.16
VPS13A-202ENST00000357409 PDCLQ13371 301 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 GJC2Q5T442 439 aaPredicted RBP7.78□□□□□ -1.16
VPS13A-202ENST00000357409 NT5DC3Q86UY8 548 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 INTS2Q9H0H0 1204 aaKnown RBP7.78□□□□□ -1.16
VPS13A-202ENST00000357409 ZSCAN32Q9NX65 697 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 FBXL21Q9UKT6 434 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 PKP3Q9Y446 797 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 UTYO14607 1347 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 NDUFB10O96000 172 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 ZNF286BP0CG31 522 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 TCP1P17987 556 aaKnown RBP7.78□□□□□ -1.16
VPS13A-202ENST00000357409 ALDH18A1P54886 795 aaKnown RBP7.78□□□□□ -1.16
VPS13A-202ENST00000357409 ARHGEF7Q14155 803 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 SDE2Q6IQ49 451 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 KRT80Q6KB66 452 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 HIBCHQ6NVY1 386 aaPredicted RBP7.78□□□□□ -1.16
VPS13A-202ENST00000357409 ZNF564Q8TBZ8 553 aaPredicted RBP7.78□□□□□ -1.16
VPS13A-202ENST00000357409 NUP85Q9BW27 656 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 LATS2Q9NRM7 1088 aa7.78□□□□□ -1.16
VPS13A-202ENST00000357409 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.78□□□□□ -1.16
VPS13A-202ENST00000357409 PRAG1Q86YV5 1406 aa7.77□□□□□ -1.16
VPS13A-202ENST00000357409 KRT14P02533 472 aa7.77□□□□□ -1.16
VPS13A-202ENST00000357409 ENO3P13929 434 aaPredicted RBP7.77□□□□□ -1.16
VPS13A-202ENST00000357409 GCKP35557 465 aa7.77□□□□□ -1.16
VPS13A-202ENST00000357409 SMAP1Q8IYB5 467 aaPredicted RBP7.77□□□□□ -1.16
VPS13A-202ENST00000357409 ARHGAP24Q8N264 748 aa7.77□□□□□ -1.16
VPS13A-202ENST00000357409 TARS2Q9BW92 718 aaKnown RBP7.77□□□□□ -1.16
VPS13A-202ENST00000357409 SNTG2Q9NY99 539 aa7.77□□□□□ -1.16
VPS13A-202ENST00000357409 ZNRF3Q9ULT6 936 aa7.77□□□□□ -1.16
VPS13A-202ENST00000357409 COL15A1P39059 1388 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 TJP3O95049 919 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 GFAPP14136 432 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 GTF2H1P32780 548 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 NBPF10Q6P3W6 841 aaKnown RBP7.77□□□□□ -1.17
VPS13A-202ENST00000357409 NBPF15Q8N660 670 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 TRIML2Q8N7C3 387 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 ASNSD1Q9NWL6 643 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 CAMSAP3Q9P1Y5 1249 aaPredicted RBP7.77□□□□□ -1.17
VPS13A-202ENST00000357409 RRN3P2A6NIE6 340 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 RASA4BC9J798 803 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 RASA4O43374 803 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 NPM3O75607 178 aaKnown RBP7.77□□□□□ -1.17
VPS13A-202ENST00000357409 ACADMP11310 421 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 CDH8P55286 799 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 TPI1P60174 286 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 EIF3EP60228 445 aaKnown RBP7.77□□□□□ -1.17
VPS13A-202ENST00000357409 GPC5P78333 572 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 NNTQ13423 1086 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 ATG16L1Q676U5 607 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 DOK6Q6PKX4 331 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 RIN2Q8WYP3 895 aaPredicted RBP7.77□□□□□ -1.17
VPS13A-202ENST00000357409 JADE3Q92613 823 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 CYP4F12Q9HCS2 524 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 RAB6BQ9NRW1 208 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 ALKBH4Q9NXW9 302 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 USP27XA6NNY8 438 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 GUCA1CO95843 209 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 CCNE1P24864 410 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 TOB2Q14106 344 aaPredicted RBP7.77□□□□□ -1.17
VPS13A-202ENST00000357409 ADAM32Q8TC27 787 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 PITPNM3Q9BZ71 974 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 GPR63Q9BZJ6 419 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 ATXN3LQ9H3M9 355 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 CHST12Q9NRB3 414 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 KCNG1Q9UIX4 513 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 LOC100653049A0A140TA62 436 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 MYO1GB0I1T2 1018 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 KRT34O76011 436 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 GHRP10912 638 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 SDC4P31431 198 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 RWDD2BP57060 319 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 BPIFB4P59827 614 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 UTS2BQ765I0 119 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 TMEM35BQ8NCS4 154 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 EDEM1Q92611 657 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 OSMRQ99650 979 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 PDGFDQ9GZP0 370 aaPredicted RBP7.77□□□□□ -1.17
VPS13A-202ENST00000357409 ABCG8Q9H221 673 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 EDC4Q6P2E9 1401 aaKnown RBP7.77□□□□□ -1.17
VPS13A-202ENST00000357409 PDGFRAP16234 1089 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 GAP43P17677 238 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 TYK2P29597 1187 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 HMOX2P30519 316 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 EPHX2P34913 555 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 LRRC23Q53EV4 343 aaPredicted RBP7.77□□□□□ -1.17
VPS13A-202ENST00000357409 NOL9Q5SY16 702 aaKnown RBP7.77□□□□□ -1.17
VPS13A-202ENST00000357409 TXNRD3Q86VQ6 643 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 XXYLT1Q8NBI6 393 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 ZMYND12Q9H0C1 365 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 SPASTQ9UBP0 616 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 LZTS1Q9Y250 596 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 ASS1P00966 412 aaKnown RBP7.77□□□□□ -1.17
VPS13A-202ENST00000357409 NBPF20Q3BBV1 942 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 DET1Q7L5Y6 550 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 NAT16Q8N8M0 369 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 RAD54LQ92698 747 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 KCTD10Q9H3F6 313 aa7.77□□□□□ -1.17
VPS13A-202ENST00000357409 MROH7-TTC4A0A0A0MT08 1334 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms