RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 KRT6CP48668 564 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 AARS2Q5JTZ9 985 aaKnown RBP13.99□□□□□ -0.17
COL6A3-202ENST00000347401 SUGP1Q8IWZ8 645 aaKnown RBP13.99□□□□□ -0.17
COL6A3-202ENST00000347401 VPS50Q96JG6 964 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 SUGCTQ9HAC7 445 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 DLGAP2Q9P1A6 1054 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 PLEKHG3A1L390 1219 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 PRLRP16471 622 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 IRAK1P51617 712 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 TSGA10IPQ3SY00 556 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 STK33Q9BYT3 514 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 NOD2Q9HC29 1040 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 SYTL2Q9HCH5 934 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 FIS1Q9Y3D6 152 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 SLCO1B7G3V0H7 640 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 FBXW4P57775 412 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 ZNF699Q32M78 642 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 CYB5D1Q6P9G0 228 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 ZNF677Q86XU0 584 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 HEXIM2Q96MH2 286 aaKnown RBP13.99□□□□□ -0.17
COL6A3-202ENST00000347401 ENO4A6NNW6 628 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 TALDO1P37837 337 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 ANXA11P50995 505 aaKnown RBP13.99□□□□□ -0.17
COL6A3-202ENST00000347401 CENPCQ03188 943 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 KRT33BQ14525 404 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 SPOUT1Q5T280 376 aaKnown RBP13.99□□□□□ -0.17
COL6A3-202ENST00000347401 RHPN2Q8IUC4 686 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 CCNJLQ8IV13 435 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 THEM5Q8N1Q8 247 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 RNF217Q8TC41 542 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 ARHGEF26Q96DR7 871 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 TMEM51Q9NW97 253 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 HPS5Q9UPZ3 1129 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 SLC4A1P02730 911 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 CHN1P15882 459 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 TRIP4Q15650 581 aaPredicted RBP13.99□□□□□ -0.17
COL6A3-202ENST00000347401 NLRP9Q7RTR0 991 aa13.99□□□□□ -0.17
COL6A3-202ENST00000347401 AFDNP55196 1824 aaKnown RBP13.99□□□□□ -0.17
COL6A3-202ENST00000347401 BICRAQ9NZM4 1560 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 TRIM49P0CI25 452 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 TRIM49CP0CI26 452 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 PRAMEP78395 509 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 PTPROQ16827 1216 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 FAM47AQ5JRC9 791 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 CLMNQ96JQ2 1002 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 ISCUQ9H1K1 167 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 KLHL31Q9H511 634 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 MAD2L2Q9UI95 211 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 RECQLP46063 649 aaPredicted RBP13.98□□□□□ -0.17
COL6A3-202ENST00000347401 VCPP55072 806 aaKnown RBP13.98□□□□□ -0.17
COL6A3-202ENST00000347401 BCAR1P56945 870 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 C1DQ13901 141 aaKnown RBP13.98□□□□□ -0.17
COL6A3-202ENST00000347401 IZUMO3Q5VZ72 239 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 FAM45BPQ6NSW5 357 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 NFRKBQ6P4R8 1299 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 ZNF594Q96JF6 807 aaPredicted RBP13.98□□□□□ -0.17
COL6A3-202ENST00000347401 TRAPPC9Q96Q05 1148 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 INO80B-WBP1J3KQ70 363 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 TM9SF1O15321 606 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 KRT6AP02538 564 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 NPEPPSP55786 919 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 ZNF200P98182 395 aaPredicted RBP13.98□□□□□ -0.17
COL6A3-202ENST00000347401 COQ7Q99807 217 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 CLEC4MQ9H2X3 399 aaPredicted RBP13.98□□□□□ -0.17
COL6A3-202ENST00000347401 RIC8BQ9NVN3 520 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 CLPTM1O96005 669 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 FNTAP49354 379 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 SERPINH1P50454 418 aaKnown RBP13.98□□□□□ -0.17
COL6A3-202ENST00000347401 HSD17B4P51659 736 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 CDC42EP1Q00587 391 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 EFHC2Q5JST6 749 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 PRMT9Q6P2P2 845 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 PPM1NQ8N819 430 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 MAGEB18Q96M61 343 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 XPO6Q96QU8 1125 aaKnown RBP13.98□□□□□ -0.17
COL6A3-202ENST00000347401 VPS11Q9H270 941 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 CYP4F11Q9HBI6 524 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 TFCP2L1Q9NZI6 479 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 ZNF219Q9P2Y4 722 aaPredicted RBP13.98□□□□□ -0.17
COL6A3-202ENST00000347401 AKT3Q9Y243 479 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 TKTP29401 623 aaKnown RBP13.98□□□□□ -0.17
COL6A3-202ENST00000347401 ADCY1Q08828 1119 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 BFSP2Q13515 415 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 TSTA3Q13630 321 aaPredicted RBP13.98□□□□□ -0.17
COL6A3-202ENST00000347401 TRIP10Q15642 601 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 ANO4Q32M45 955 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 PLEKHA5Q9HAU0 1116 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 TBX22Q9Y458 520 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 CENPXA8MT69 81 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 TNFAIP8O95379 198 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 MYL2P10916 166 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 CCNI2Q6ZMN8 369 aaPredicted RBP13.98□□□□□ -0.17
COL6A3-202ENST00000347401 P3H2Q8IVL5 708 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 PPHLN1Q8NEY8 458 aaKnown RBP13.98□□□□□ -0.17
COL6A3-202ENST00000347401 NPHS2Q9NP85 383 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 IMPAD1Q9NX62 359 aa13.98□□□□□ -0.17
COL6A3-202ENST00000347401 hCG_1642624A0A1W2PR95 340 aa13.97□□□□□ -0.17
COL6A3-202ENST00000347401 C5orf58C9J3I9 102 aa13.97□□□□□ -0.17
COL6A3-202ENST00000347401 GNAT1P11488 350 aa13.97□□□□□ -0.17
COL6A3-202ENST00000347401 VCAM1P19320 739 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms