RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 TNNI1P19237 187 aa20.77■□□□□ 0.92
COL9A3-201ENST00000343916 HPDP32754 393 aaPredicted RBP20.77■□□□□ 0.92
COL9A3-201ENST00000343916 DUPD1Q68J44 220 aa20.77■□□□□ 0.92
COL9A3-201ENST00000343916 SPOPLQ6IQ16 392 aa20.77■□□□□ 0.92
COL9A3-201ENST00000343916 JAMLQ86YT9 394 aa20.77■□□□□ 0.92
COL9A3-201ENST00000343916 HAPLN2Q9GZV7 340 aa20.77■□□□□ 0.92
COL9A3-201ENST00000343916 GTF3C4Q9UKN8 822 aa20.77■□□□□ 0.92
COL9A3-201ENST00000343916 ATP8A1Q9Y2Q0 1164 aa20.77■□□□□ 0.92
COL9A3-201ENST00000343916 SNX24Q9Y343 169 aa20.77■□□□□ 0.92
COL9A3-201ENST00000343916 AFG3L2Q9Y4W6 797 aa20.77■□□□□ 0.92
COL9A3-201ENST00000343916 MTA2O94776 668 aa20.77■□□□□ 0.91
COL9A3-201ENST00000343916 GTF2H1P32780 548 aa20.77■□□□□ 0.91
COL9A3-201ENST00000343916 MAGEA9P43362 315 aa20.77■□□□□ 0.91
COL9A3-201ENST00000343916 CCT5P48643 541 aa20.77■□□□□ 0.91
COL9A3-201ENST00000343916 RTP1P59025 263 aa20.77■□□□□ 0.91
COL9A3-201ENST00000343916 ASAP3Q8TDY4 903 aa20.77■□□□□ 0.91
COL9A3-201ENST00000343916 FMO2Q99518 471 aa20.77■□□□□ 0.91
COL9A3-201ENST00000343916 HOXC10Q9NYD6 342 aa20.77■□□□□ 0.91
COL9A3-201ENST00000343916 PTPRJQ12913 1337 aa20.77■□□□□ 0.91
COL9A3-201ENST00000343916 SSC5DA1L4H1 1573 aa20.76■□□□□ 0.91
COL9A3-201ENST00000343916 LCTP09848 1927 aa20.76■□□□□ 0.91
COL9A3-201ENST00000343916 GOLGA6L10A6NI86 522 aa20.76■□□□□ 0.91
COL9A3-201ENST00000343916 LRRIQ4A6NIV6 560 aa20.76■□□□□ 0.91
COL9A3-201ENST00000343916 MYZAPP0CAP1 466 aa20.76■□□□□ 0.91
COL9A3-201ENST00000343916 HIRAP54198 1017 aaPredicted RBP20.76■□□□□ 0.91
COL9A3-201ENST00000343916 TTC27Q6P3X3 843 aa20.76■□□□□ 0.91
COL9A3-201ENST00000343916 KDM7AQ6ZMT4 941 aa20.76■□□□□ 0.91
COL9A3-201ENST00000343916 ANKRD35Q8N283 1001 aa20.76■□□□□ 0.91
COL9A3-201ENST00000343916 MAGOHBQ96A72 148 aaKnown RBP20.76■□□□□ 0.91
COL9A3-201ENST00000343916 TRIM7Q9C029 511 aa20.76■□□□□ 0.91
COL9A3-201ENST00000343916 ZNF302Q9NR11 478 aa20.76■□□□□ 0.91
COL9A3-201ENST00000343916 C1orf112Q9NSG2 853 aa20.76■□□□□ 0.91
COL9A3-201ENST00000343916 CNOT8Q9UFF9 292 aaKnown RBP20.76■□□□□ 0.91
COL9A3-201ENST00000343916 MYO1FO00160 1098 aa20.76■□□□□ 0.91
COL9A3-201ENST00000343916 STXBP2Q15833 593 aa20.76■□□□□ 0.91
COL9A3-201ENST00000343916 ZBTB41Q5SVQ8 909 aa20.76■□□□□ 0.91
COL9A3-201ENST00000343916 TREML2Q5T2D2 321 aa20.76■□□□□ 0.91
COL9A3-201ENST00000343916 SEL1L2Q5TEA6 688 aa20.76■□□□□ 0.91
COL9A3-201ENST00000343916 LLGL2Q6P1M3 1020 aa20.76■□□□□ 0.91
COL9A3-201ENST00000343916 LRIG3Q6UXM1 1119 aa20.76■□□□□ 0.91
COL9A3-201ENST00000343916 FNBP1Q96RU3 617 aa20.76■□□□□ 0.91
COL9A3-201ENST00000343916 WNT8AQ9H1J5 351 aa20.76■□□□□ 0.91
COL9A3-201ENST00000343916 EXTL3O43909 919 aa20.75■□□□□ 0.91
COL9A3-201ENST00000343916 PHF2O75151 1096 aa20.75■□□□□ 0.91
COL9A3-201ENST00000343916 GLRA2P23416 452 aa20.75■□□□□ 0.91
COL9A3-201ENST00000343916 PLTPP55058 493 aa20.75■□□□□ 0.91
COL9A3-201ENST00000343916 GCNT1Q02742 428 aa20.75■□□□□ 0.91
COL9A3-201ENST00000343916 TDRD10Q5VZ19 366 aaKnown RBP20.75■□□□□ 0.91
COL9A3-201ENST00000343916 ACAD10Q6JQN1 1059 aa20.75■□□□□ 0.91
COL9A3-201ENST00000343916 C15orf39Q6ZRI6 1047 aa20.75■□□□□ 0.91
COL9A3-201ENST00000343916 NLGN2Q8NFZ4 835 aa20.75■□□□□ 0.91
COL9A3-201ENST00000343916 CNKSR2Q8WXI2 1034 aa20.75■□□□□ 0.91
COL9A3-201ENST00000343916 CPA5Q8WXQ8 436 aa20.75■□□□□ 0.91
COL9A3-201ENST00000343916 BCCIPQ9P287 314 aaKnown RBP eCLIP20.75■□□□□ 0.91
COL9A3-201ENST00000343916 ANKFY1Q9P2R3 1169 aa20.75■□□□□ 0.91
COL9A3-201ENST00000343916 HMGB1P1B2RPK0 211 aaPredicted RBP20.75■□□□□ 0.91
COL9A3-201ENST00000343916 OATP04181 439 aa20.75■□□□□ 0.91
COL9A3-201ENST00000343916 CORO7P57737 925 aa20.75■□□□□ 0.91
COL9A3-201ENST00000343916 STRN3Q13033 797 aa20.75■□□□□ 0.91
COL9A3-201ENST00000343916 MKRN4PQ13434 485 aaPredicted RBP20.75■□□□□ 0.91
COL9A3-201ENST00000343916 BIRC3Q13489 604 aa20.75■□□□□ 0.91
COL9A3-201ENST00000343916 SEZ6Q53EL9 994 aa20.75■□□□□ 0.91
COL9A3-201ENST00000343916 PACS2Q86VP3 889 aa20.75■□□□□ 0.91
COL9A3-201ENST00000343916 ZDHHC18Q9NUE0 388 aa20.75■□□□□ 0.91
COL9A3-201ENST00000343916 AGO2Q9UKV8 859 aaKnown RBP20.75■□□□□ 0.91
COL9A3-201ENST00000343916 MAFBQ9Y5Q3 323 aaPredicted RBP20.75■□□□□ 0.91
COL9A3-201ENST00000343916 STAM2O75886 525 aa20.74■□□□□ 0.91
COL9A3-201ENST00000343916 EDN1P05305 212 aa20.74■□□□□ 0.91
COL9A3-201ENST00000343916 SSTR3P32745 418 aaPredicted RBP20.74■□□□□ 0.91
COL9A3-201ENST00000343916 DHX34Q14147 1143 aaKnown RBP20.74■□□□□ 0.91
COL9A3-201ENST00000343916 PPP2R5EQ16537 467 aa20.74■□□□□ 0.91
COL9A3-201ENST00000343916 CLEC16AQ2KHT3 1053 aa20.74■□□□□ 0.91
COL9A3-201ENST00000343916 CCDC137Q6PK04 289 aaKnown RBP20.74■□□□□ 0.91
COL9A3-201ENST00000343916 FBXO25Q8TCJ0 367 aa20.74■□□□□ 0.91
COL9A3-201ENST00000343916 PSPC1Q8WXF1 523 aaKnown RBP20.74■□□□□ 0.91
COL9A3-201ENST00000343916 PTPN22Q9Y2R2 807 aa20.74■□□□□ 0.91
COL9A3-201ENST00000343916 LTBP3Q9NS15 1303 aa20.74■□□□□ 0.91
COL9A3-201ENST00000343916 KIAA0391O15091 583 aaKnown RBP20.73■□□□□ 0.91
COL9A3-201ENST00000343916 HLA-DRAP01903 254 aa20.73■□□□□ 0.91
COL9A3-201ENST00000343916 CTNNA2P26232 953 aa20.73■□□□□ 0.91
COL9A3-201ENST00000343916 PTGIRP43119 386 aa20.73■□□□□ 0.91
COL9A3-201ENST00000343916 MTMR3Q13615 1198 aa20.73■□□□□ 0.91
COL9A3-201ENST00000343916 CRELD2Q6UXH1 353 aaPredicted RBP20.73■□□□□ 0.91
COL9A3-201ENST00000343916 TARS2Q9BW92 718 aaKnown RBP20.73■□□□□ 0.91
COL9A3-201ENST00000343916 UVRAGQ9P2Y5 699 aa20.73■□□□□ 0.91
COL9A3-201ENST00000343916 PCDHA3Q9Y5H8 950 aa20.73■□□□□ 0.91
COL9A3-201ENST00000343916 PIK3CAP42336 1068 aa20.73■□□□□ 0.91
COL9A3-201ENST00000343916 KCNJ1P48048 391 aa20.73■□□□□ 0.91
COL9A3-201ENST00000343916 ZACNQ401N2 412 aa20.73■□□□□ 0.91
COL9A3-201ENST00000343916 SCARA3Q6AZY7 606 aa20.73■□□□□ 0.91
COL9A3-201ENST00000343916 PORCNQ9H237 461 aa20.73■□□□□ 0.91
COL9A3-201ENST00000343916 DHX33Q9H6R0 707 aaKnown RBP20.73■□□□□ 0.91
COL9A3-201ENST00000343916 GPRC5DQ9NZD1 345 aa20.73■□□□□ 0.91
COL9A3-201ENST00000343916 ANAPC7Q9UJX3 599 aa20.73■□□□□ 0.91
COL9A3-201ENST00000343916 POLR2AP24928 1970 aaKnown RBP20.73■□□□□ 0.91
COL9A3-201ENST00000343916 FAM187AA6NFU0 413 aa20.72■□□□□ 0.91
COL9A3-201ENST00000343916 K7ERI5 159 aa20.72■□□□□ 0.91
COL9A3-201ENST00000343916 CFHP08603 1231 aa20.72■□□□□ 0.91
COL9A3-201ENST00000343916 UNGP13051 313 aaPredicted RBP20.72■□□□□ 0.91
COL9A3-201ENST00000343916 CHRNA3P32297 505 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms