RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 DLG4P78352 724 aa13.2□□□□□ -0.3
SNRNP48-201ENST00000342415 CDR2Q01850 454 aa13.2□□□□□ -0.3
SNRNP48-201ENST00000342415 OR6B2Q6IFH4 312 aa13.2□□□□□ -0.3
SNRNP48-201ENST00000342415 IRF2BP2Q7Z5L9 587 aa13.2□□□□□ -0.3
SNRNP48-201ENST00000342415 RBM46Q8TBY0 533 aaKnown RBP13.2□□□□□ -0.3
SNRNP48-201ENST00000342415 VTI1AQ96AJ9 217 aa13.2□□□□□ -0.3
SNRNP48-201ENST00000342415 TMEM143Q96AN5 459 aa13.2□□□□□ -0.3
SNRNP48-201ENST00000342415 CCDC124Q96CT7 223 aaKnown RBP13.2□□□□□ -0.3
SNRNP48-201ENST00000342415 TRIM55Q9BYV6 548 aa13.2□□□□□ -0.3
SNRNP48-201ENST00000342415 NFAT5O94916 1531 aa13.2□□□□□ -0.3
SNRNP48-201ENST00000342415 CFAP73A6NFT4 308 aa13.2□□□□□ -0.3
SNRNP48-201ENST00000342415 RASSF10A6NK89 507 aa13.2□□□□□ -0.3
SNRNP48-201ENST00000342415 TNNC2P02585 160 aa13.2□□□□□ -0.3
SNRNP48-201ENST00000342415 RRM1P23921 792 aa13.2□□□□□ -0.3
SNRNP48-201ENST00000342415 CNGA1P29973 690 aa13.2□□□□□ -0.3
SNRNP48-201ENST00000342415 HNRNPH3P31942 346 aaKnown RBP13.2□□□□□ -0.3
SNRNP48-201ENST00000342415 PTENP60484 403 aa13.2□□□□□ -0.3
SNRNP48-201ENST00000342415 GEN1Q17RS7 908 aa13.2□□□□□ -0.3
SNRNP48-201ENST00000342415 AP1ARQ63HQ0 302 aa13.2□□□□□ -0.3
SNRNP48-201ENST00000342415 ZNF720Q7Z2F6 126 aa13.2□□□□□ -0.3
SNRNP48-201ENST00000342415 SESTD1Q86VW0 696 aa13.2□□□□□ -0.3
SNRNP48-201ENST00000342415 CDR2LQ86X02 465 aaPredicted RBP13.2□□□□□ -0.3
SNRNP48-201ENST00000342415 ARHGEF19Q8IW93 802 aa13.2□□□□□ -0.3
SNRNP48-201ENST00000342415 NME8Q8N427 588 aa13.2□□□□□ -0.3
SNRNP48-201ENST00000342415 FAM149B1Q96BN6 582 aa13.2□□□□□ -0.3
SNRNP48-201ENST00000342415 UNC45AQ9H3U1 944 aa13.2□□□□□ -0.3
SNRNP48-201ENST00000342415 NPR1P16066 1061 aa13.19□□□□□ -0.3
SNRNP48-201ENST00000342415 KDSRQ06136 332 aa13.19□□□□□ -0.3
SNRNP48-201ENST00000342415 KIF22Q14807 665 aa13.19□□□□□ -0.3
SNRNP48-201ENST00000342415 SLC10A5Q5PT55 438 aa13.19□□□□□ -0.3
SNRNP48-201ENST00000342415 TAS1R2Q8TE23 839 aa13.19□□□□□ -0.3
SNRNP48-201ENST00000342415 ZKSCAN4Q969J2 545 aaPredicted RBP13.19□□□□□ -0.3
SNRNP48-201ENST00000342415 FAM161BQ96MY7 647 aa13.19□□□□□ -0.3
SNRNP48-201ENST00000342415 SH3GL2Q99962 352 aa13.19□□□□□ -0.3
SNRNP48-201ENST00000342415 TRAIPQ9BWF2 469 aa13.19□□□□□ -0.3
SNRNP48-201ENST00000342415 TUFT1Q9NNX1 390 aa13.19□□□□□ -0.3
SNRNP48-201ENST00000342415 KCNH7Q9NS40 1196 aa13.19□□□□□ -0.3
SNRNP48-201ENST00000342415 AKAP12Q02952 1782 aa13.19□□□□□ -0.3
SNRNP48-201ENST00000342415 WDR64B1ANS9 1081 aa13.19□□□□□ -0.3
SNRNP48-201ENST00000342415 DCTN3O75935 186 aa13.19□□□□□ -0.3
SNRNP48-201ENST00000342415 GJB6O95452 261 aa13.19□□□□□ -0.3
SNRNP48-201ENST00000342415 RARAP10276 462 aa13.19□□□□□ -0.3
SNRNP48-201ENST00000342415 NCF2P19878 526 aaPredicted RBP13.19□□□□□ -0.3
SNRNP48-201ENST00000342415 SMARCA1P28370 1054 aa13.19□□□□□ -0.3
SNRNP48-201ENST00000342415 SHMT1P34896 483 aa13.19□□□□□ -0.3
SNRNP48-201ENST00000342415 MAGEA4P43358 317 aa13.19□□□□□ -0.3
SNRNP48-201ENST00000342415 SPP2Q13103 211 aa13.19□□□□□ -0.3
SNRNP48-201ENST00000342415 SLC27A3Q5K4L6 730 aa13.19□□□□□ -0.3
SNRNP48-201ENST00000342415 AGR3Q8TD06 166 aa13.19□□□□□ -0.3
SNRNP48-201ENST00000342415 APOL6Q9BWW8 343 aa13.19□□□□□ -0.3
SNRNP48-201ENST00000342415 GANQ9H2C0 597 aa13.19□□□□□ -0.3
SNRNP48-201ENST00000342415 ATRNO75882 1429 aa13.19□□□□□ -0.3
SNRNP48-201ENST00000342415 ALG3Q92685 438 aa13.19□□□□□ -0.3
SNRNP48-201ENST00000342415 CYP4F11Q9HBI6 524 aa13.19□□□□□ -0.3
SNRNP48-201ENST00000342415 NYAP2Q9P242 653 aa13.19□□□□□ -0.3
SNRNP48-201ENST00000342415 HAUS5O94927 633 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 ITIH2P19823 946 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 SLC35G1Q2M3R5 365 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 NCAPG2Q86XI2 1143 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 CCNYQ8ND76 341 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 ATP2A3Q93084 1043 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 IFT122Q9HBG6 1241 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 FAM47DPA6NHR8 397 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 YY1P25490 414 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 ARFIP2P53365 341 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 SLC12A3P55017 1021 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 PPATQ06203 517 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 SPOPLQ6IQ16 392 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 ZBTB8OSQ8IWT0 167 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 DCLK2Q8N568 766 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 LNX1Q8TBB1 728 aaPredicted RBP13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 CCHCR1Q8TD31 782 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 FAF2Q96CS3 445 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 UBXN6Q9BZV1 441 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 ERVK-5Q9HDB9 667 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 RBAKQ9NYW8 714 aaPredicted RBP13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 NRXN3Q9Y4C0 1643 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 TBX3O15119 743 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 RARGP13631 454 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 ARL4CP56559 192 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 COPS2P61201 443 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 ARSHQ5FYA8 562 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 TRMT10CQ7L0Y3 403 aaKnown RBP13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 PALB2Q86YC2 1186 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 TATDN2Q93075 761 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 RNF34Q969K3 372 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 TMEM237Q96Q45 408 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 TSC22D3Q99576 134 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 TRIM4Q9C037 500 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 TRAF3IP3Q9Y228 551 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 FIS1Q9Y3D6 152 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 PDE4DIPQ5VU43 2346 aa13.18□□□□□ -0.3
SNRNP48-201ENST00000342415 COPEO14579 308 aa13.17□□□□□ -0.3
SNRNP48-201ENST00000342415 CFLARO15519 480 aa13.17□□□□□ -0.3
SNRNP48-201ENST00000342415 CPP00450 1065 aa13.17□□□□□ -0.3
SNRNP48-201ENST00000342415 SKIP12755 728 aa13.17□□□□□ -0.3
SNRNP48-201ENST00000342415 POLD1P28340 1107 aa13.17□□□□□ -0.3
SNRNP48-201ENST00000342415 RHBDL3P58872 404 aa13.17□□□□□ -0.3
SNRNP48-201ENST00000342415 MAP7D1Q3KQU3 841 aa13.17□□□□□ -0.3
SNRNP48-201ENST00000342415 KCNT1Q5JUK3 1230 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms