RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 GRM1Q13255 1194 aa16.16■□□□□ 0.18
TPM3-208ENST00000341485 CUL1Q13616 776 aa16.16■□□□□ 0.18
TPM3-208ENST00000341485 CCDC62Q6P9F0 684 aa16.16■□□□□ 0.18
TPM3-208ENST00000341485 DDX42Q86XP3 938 aaKnown RBP eCLIP16.16■□□□□ 0.18
TPM3-208ENST00000341485 MAP4K3Q8IVH8 894 aa16.16■□□□□ 0.18
TPM3-208ENST00000341485 SLC17A8Q8NDX2 589 aa16.16■□□□□ 0.18
TPM3-208ENST00000341485 MCPH1Q8NEM0 835 aa16.16■□□□□ 0.18
TPM3-208ENST00000341485 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.16■□□□□ 0.181e-8■■■■■ 76.2
TPM3-208ENST00000341485 BSNDQ8WZ55 320 aa16.16■□□□□ 0.18
TPM3-208ENST00000341485 KIFAP3Q92845 792 aa16.16■□□□□ 0.18
TPM3-208ENST00000341485 COPS5Q92905 334 aa16.16■□□□□ 0.18
TPM3-208ENST00000341485 SAAL1Q96ER3 474 aa16.16■□□□□ 0.18
TPM3-208ENST00000341485 GPR20Q99678 358 aa16.16■□□□□ 0.18
TPM3-208ENST00000341485 SLITRK6Q9H5Y7 841 aa16.16■□□□□ 0.18
TPM3-208ENST00000341485 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.16■□□□□ 0.188e-7■■■■■ 194.6
TPM3-208ENST00000341485 DIS3Q9Y2L1 958 aaKnown RBP16.16■□□□□ 0.18
TPM3-208ENST00000341485 KIF3CO14782 793 aa16.15■□□□□ 0.18
TPM3-208ENST00000341485 SGPL1O95470 568 aa16.15■□□□□ 0.18
TPM3-208ENST00000341485 KRT14P02533 472 aa16.15■□□□□ 0.18
TPM3-208ENST00000341485 ATP4AP20648 1035 aa16.15■□□□□ 0.18
TPM3-208ENST00000341485 POLGP54098 1239 aaPredicted RBP16.15■□□□□ 0.18
TPM3-208ENST00000341485 MAP2K1Q02750 393 aaPredicted RBP16.15■□□□□ 0.18
TPM3-208ENST00000341485 DMP1Q13316 513 aaPredicted RBP16.15■□□□□ 0.18
TPM3-208ENST00000341485 HLTFQ14527 1009 aaKnown RBP eCLIP16.15■□□□□ 0.18
TPM3-208ENST00000341485 KCTD19Q17RG1 926 aaPredicted RBP16.15■□□□□ 0.18
TPM3-208ENST00000341485 CD302Q8IX05 232 aa16.15■□□□□ 0.18
TPM3-208ENST00000341485 SEMA4DQ92854 862 aa16.15■□□□□ 0.18
TPM3-208ENST00000341485 GLG1Q92896 1179 aa16.15■□□□□ 0.18
TPM3-208ENST00000341485 MAML3Q96JK9 1138 aa16.15■□□□□ 0.18
TPM3-208ENST00000341485 KREMEN1Q96MU8 473 aa16.15■□□□□ 0.18
TPM3-208ENST00000341485 PCDHB18PQ96TA0 734 aa16.15■□□□□ 0.18
TPM3-208ENST00000341485 PCYT2Q99447 389 aa16.15■□□□□ 0.18
TPM3-208ENST00000341485 NEUROG2Q9H2A3 272 aa16.15■□□□□ 0.18
TPM3-208ENST00000341485 ZFYVE28Q9HCC9 887 aa16.15■□□□□ 0.18
TPM3-208ENST00000341485 AMACRQ9UHK6 382 aa16.15■□□□□ 0.18
TPM3-208ENST00000341485 EXOC7Q9UPT5 735 aa16.15■□□□□ 0.18
TPM3-208ENST00000341485 TMEM88BA6NKF7 163 aa16.15■□□□□ 0.18
TPM3-208ENST00000341485 FAM155AB1AL88 458 aaPredicted RBP16.15■□□□□ 0.18
TPM3-208ENST00000341485 FGGP02679 453 aa16.15■□□□□ 0.18
TPM3-208ENST00000341485 FTLP02792 175 aaPredicted RBP16.15■□□□□ 0.18
TPM3-208ENST00000341485 CHRNB2P17787 502 aa16.15■□□□□ 0.18
TPM3-208ENST00000341485 SMTNP53814 917 aa16.15■□□□□ 0.18
TPM3-208ENST00000341485 HADHBP55084 474 aaKnown RBP16.15■□□□□ 0.18
TPM3-208ENST00000341485 SOX10P56693 466 aa16.15■□□□□ 0.18
TPM3-208ENST00000341485 SNRNP35Q16560 246 aaKnown RBP16.15■□□□□ 0.18
TPM3-208ENST00000341485 HSDL1Q3SXM5 330 aa16.15■□□□□ 0.18
TPM3-208ENST00000341485 RHOT2Q8IXI1 618 aa16.15■□□□□ 0.18
TPM3-208ENST00000341485 HVCN1Q96D96 273 aa16.15■□□□□ 0.18
TPM3-208ENST00000341485 NR2E1Q9Y466 385 aa16.15■□□□□ 0.18
TPM3-208ENST00000341485 DENND3A2RUS2 1198 aa16.14■□□□□ 0.17
TPM3-208ENST00000341485 USP8P40818 1118 aa16.14■□□□□ 0.17
TPM3-208ENST00000341485 POU5F1Q01860 360 aaKnown RBP16.14■□□□□ 0.17
TPM3-208ENST00000341485 SLC39A4Q6P5W5 647 aa16.14■□□□□ 0.17
TPM3-208ENST00000341485 MAMDC4Q6UXC1 1216 aa16.14■□□□□ 0.17
TPM3-208ENST00000341485 NOP9Q86U38 636 aaKnown RBP16.14■□□□□ 0.17
TPM3-208ENST00000341485 FAM71AQ8IYT1 594 aa16.14■□□□□ 0.17
TPM3-208ENST00000341485 FAM167AQ96KS9 214 aa16.14■□□□□ 0.17
TPM3-208ENST00000341485 KMT5AQ9NQR1 393 aa16.14■□□□□ 0.17
TPM3-208ENST00000341485 NOCTQ9UK39 431 aaKnown RBP16.14■□□□□ 0.17
TPM3-208ENST00000341485 TTI1O43156 1089 aa16.14■□□□□ 0.17
TPM3-208ENST00000341485 CNGA1P29973 690 aa16.14■□□□□ 0.17
TPM3-208ENST00000341485 EMC2Q15006 297 aa16.14■□□□□ 0.17
TPM3-208ENST00000341485 TCEAL1Q15170 157 aa16.14■□□□□ 0.17
TPM3-208ENST00000341485 TAPT1Q6NXT6 567 aa16.14■□□□□ 0.17
TPM3-208ENST00000341485 SH2D3CQ8N5H7 860 aa16.14■□□□□ 0.17
TPM3-208ENST00000341485 CCDC26Q8TAB7 109 aa16.14■□□□□ 0.17
TPM3-208ENST00000341485 NPLOC4Q8TAT6 608 aa16.14■□□□□ 0.17
TPM3-208ENST00000341485 EPS8L1Q8TE68 723 aa16.14■□□□□ 0.17
TPM3-208ENST00000341485 PARD3BQ8TEW8 1205 aa16.14■□□□□ 0.17
TPM3-208ENST00000341485 SPIRE2Q8WWL2 714 aa16.14■□□□□ 0.17
TPM3-208ENST00000341485 ALG3Q92685 438 aa16.14■□□□□ 0.17
TPM3-208ENST00000341485 CCDC127Q96BQ5 260 aa16.14■□□□□ 0.17
TPM3-208ENST00000341485 IFT74Q96LB3 600 aa16.14■□□□□ 0.17
TPM3-208ENST00000341485 RNPC3Q96LT9 517 aaKnown RBP16.14■□□□□ 0.17
TPM3-208ENST00000341485 NIFKQ9BYG3 293 aaKnown RBP16.14■□□□□ 0.17
TPM3-208ENST00000341485 CELF4Q9BZC1 486 aaKnown RBP16.14■□□□□ 0.17
TPM3-208ENST00000341485 CARD9Q9H257 536 aa16.14■□□□□ 0.17
TPM3-208ENST00000341485 C17orf75Q9HAS0 396 aa16.14■□□□□ 0.17
TPM3-208ENST00000341485 RTN2O75298 545 aa16.13■□□□□ 0.17
TPM3-208ENST00000341485 SNAI1O95863 264 aaPredicted RBP16.13■□□□□ 0.17
TPM3-208ENST00000341485 GH1P01241 217 aa16.13■□□□□ 0.17
TPM3-208ENST00000341485 MARK3P27448 753 aa16.13■□□□□ 0.17
TPM3-208ENST00000341485 IRAK1P51617 712 aa16.13■□□□□ 0.17
TPM3-208ENST00000341485 GPC5P78333 572 aa16.13■□□□□ 0.17
TPM3-208ENST00000341485 ZNF211Q13398 564 aaPredicted RBP16.13■□□□□ 0.17
TPM3-208ENST00000341485 PRPF4BQ13523 1007 aaKnown RBP16.13■□□□□ 0.17
TPM3-208ENST00000341485 LAMC2Q13753 1193 aa16.13■□□□□ 0.17
TPM3-208ENST00000341485 TMEM63BQ5T3F8 832 aa16.13■□□□□ 0.17
TPM3-208ENST00000341485 NAA35Q5VZE5 725 aa16.13■□□□□ 0.17
TPM3-208ENST00000341485 C11orf63Q6NUN7 778 aa16.13■□□□□ 0.17
TPM3-208ENST00000341485 C17orf99Q6UX52 265 aa16.13■□□□□ 0.17
TPM3-208ENST00000341485 PPM1KQ8N3J5 372 aa16.13■□□□□ 0.17
TPM3-208ENST00000341485 SLC7A3Q8WY07 619 aa16.13■□□□□ 0.17
TPM3-208ENST00000341485 SEC14L1Q92503 715 aa16.13■□□□□ 0.17
TPM3-208ENST00000341485 SHC3Q92529 594 aa16.13■□□□□ 0.17
TPM3-208ENST00000341485 POP1Q99575 1024 aaKnown RBP16.13■□□□□ 0.17
TPM3-208ENST00000341485 TINF2Q9BSI4 451 aa16.13■□□□□ 0.17
TPM3-208ENST00000341485 CAPS2Q9BXY5 557 aa16.13■□□□□ 0.17
TPM3-208ENST00000341485 POLR3FQ9H1D9 316 aaPredicted RBP16.13■□□□□ 0.17
TPM3-208ENST00000341485 ACP6Q9NPH0 428 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms