RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 BUB1O43683 1085 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 FTLP02792 175 aaPredicted RBP7.31□□□□□ -1.24
SF3B1-201ENST00000335508 KRT3P12035 628 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 PHBP35232 272 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 EPHB4P54760 987 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 POU5F1BQ06416 359 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 CBWD2Q8IUF1 395 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 NKX2-3Q8TAU0 364 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 WHAMMQ8TF30 809 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 CLMNQ96JQ2 1002 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 TSPAN18Q96SJ8 248 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 AAASQ9NRG9 546 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 EML1O00423 815 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 USP2O75604 605 aaPredicted RBP7.31□□□□□ -1.24
SF3B1-201ENST00000335508 ADCY8P40145 1251 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 GOLGA8FQ08AF8 430 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 GOLGA8DPQ0D2H9 430 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 SV2CQ496J9 727 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 C17orf53Q8N3J3 647 aaPredicted RBP7.31□□□□□ -1.24
SF3B1-201ENST00000335508 VCPIP1Q96JH7 1222 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 TEPSINQ96N21 525 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 AGPAT1Q99943 283 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 CBWD1Q9BRT8 395 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 MORF4L1Q9UBU8 362 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 DPP7Q9UHL4 492 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 AFG3L2Q9Y4W6 797 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 TLR2O60603 784 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 LGALS2P05162 132 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 SLC9A1P19634 815 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 MAP3K10Q02779 954 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 ZNF394Q53GI3 561 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 TADA2BQ86TJ2 420 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 CGRRF1Q99675 332 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 TRIM31Q9BZY9 425 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 TNFSF13BQ9Y275 285 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 ASTN2O75129 1339 aaPredicted RBP7.31□□□□□ -1.24
SF3B1-201ENST00000335508 PHRF1Q9P1Y6 1649 aaKnown RBP7.31□□□□□ -1.24
SF3B1-201ENST00000335508 TJP3O95049 919 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 CUL1Q13616 776 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 CCDC144BQ3MJ40 725 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 CCDC60Q8IWA6 550 aaPredicted RBP7.31□□□□□ -1.24
SF3B1-201ENST00000335508 DHX40Q8IX18 779 aaKnown RBP7.31□□□□□ -1.24
SF3B1-201ENST00000335508 FAM76AQ8TAV0 307 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 FRMD8Q9BZ67 464 aaPredicted RBP7.31□□□□□ -1.24
SF3B1-201ENST00000335508 PCDHAC2Q9Y5I4 1007 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 SOWAHDA6NJG2 315 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 H7C0C1 242 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 B3GAT3O94766 335 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 HEXIM1O94992 359 aaKnown RBP7.31□□□□□ -1.24
SF3B1-201ENST00000335508 APOEP02649 317 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 ATP5OP48047 213 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 BCAR1P56945 870 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 LDLRAD1Q5T700 205 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 ATRIPQ8WXE1 791 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 HPS3Q969F9 1004 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 GCNAQ96QF7 691 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 MED15Q96RN5 788 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 NTPCRQ9BSD7 190 aaKnown RBP7.31□□□□□ -1.24
SF3B1-201ENST00000335508 PLEKHA5Q9HAU0 1116 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 SAMD15Q9P1V8 674 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 IP6K2Q9UHH9 426 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 FAM186AA6NE01 2351 aa7.31□□□□□ -1.24
SF3B1-201ENST00000335508 RTN2O75298 545 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 DUSP11O75319 330 aaKnown RBP7.3□□□□□ -1.24
SF3B1-201ENST00000335508 GYPCP04921 128 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 MYBP10242 640 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 ZFXP17010 805 aaPredicted RBP7.3□□□□□ -1.24
SF3B1-201ENST00000335508 EIF3BP55884 814 aaKnown RBP7.3□□□□□ -1.24
SF3B1-201ENST00000335508 CAV1Q03135 178 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 CELF3Q5SZQ8 465 aaKnown RBP7.3□□□□□ -1.24
SF3B1-201ENST00000335508 ZNF467Q7Z7K2 595 aaPredicted RBP7.3□□□□□ -1.24
SF3B1-201ENST00000335508 WDR49Q8IV35 697 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 GOLGA8CPA6NN73 597 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 EBAG9O00559 213 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 MTSS1O43312 755 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 LSM8O95777 96 aaKnown RBP7.3□□□□□ -1.24
SF3B1-201ENST00000335508 SRGAP2BP0DMP2 458 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 CHRNA3P32297 505 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 GALCP54803 685 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 FSCN1Q16658 493 aaKnown RBP7.3□□□□□ -1.24
SF3B1-201ENST00000335508 DNAJC7Q99615 494 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 MRPL9Q9BYD2 267 aaKnown RBP7.3□□□□□ -1.24
SF3B1-201ENST00000335508 GTF2F1P35269 517 aaKnown RBP eCLIP7.3□□□□□ -1.24
SF3B1-201ENST00000335508 PPM1FP49593 454 aaPredicted RBP7.3□□□□□ -1.24
SF3B1-201ENST00000335508 ZNF131P52739 623 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 SLC12A2P55011 1212 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 PTENP60484 403 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 PSMC6P62333 389 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 ELF2Q15723 593 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 SLITRK1Q96PX8 696 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 MMTAG2Q9BU76 263 aaKnown RBP7.3□□□□□ -1.24
SF3B1-201ENST00000335508 WNT8AQ9H1J5 351 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 CNOT1A5YKK6 2376 aaKnown RBP7.3□□□□□ -1.24
SF3B1-201ENST00000335508 A0A0G2JLL6 359 aaPredicted RBP7.3□□□□□ -1.24
SF3B1-201ENST00000335508 ZBBXA8MT70 800 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 MAFO75444 373 aaPredicted RBP7.3□□□□□ -1.24
SF3B1-201ENST00000335508 GNRH1P01148 92 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 ATF2P15336 505 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 PRKCIP41743 596 aa7.3□□□□□ -1.24
SF3B1-201ENST00000335508 C4orf50Q6ZRC1 276 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms