RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 SLC40A1Q9NP59 571 aa14.6□□□□□ -0.07
CSPG4-201ENST00000308508 NFKBIL1Q9UBC1 381 aaPredicted RBP14.6□□□□□ -0.07
CSPG4-201ENST00000308508 TEX14Q8IWB6 1497 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 RNF103O00237 685 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 CYTH3O43739 400 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 TLR2O60603 784 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 MYL2P10916 166 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 CORO7P57737 925 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 ZNF394Q53GI3 561 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 RAD54LQ92698 747 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 DCPSQ96C86 337 aaKnown RBP14.59□□□□□ -0.07
CSPG4-201ENST00000308508 NSL1Q96IY1 281 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 CNDP1Q96KN2 507 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 FOXP3Q9BZS1 431 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 PVALEFA0A1B0GWK0 134 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 IQCA1LA6NCM1 817 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 HUS1O60921 280 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 ATXN7L3BQ96GX2 97 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 LRRC1Q9BTT6 524 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 PHF20L1A8MW92 1017 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 ACTR2P61160 394 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 USP17L2Q6R6M4 530 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 SFR1Q86XK3 245 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 SNRNP27Q8WVK2 155 aaKnown RBP14.59□□□□□ -0.07
CSPG4-201ENST00000308508 OSBPL8Q9BZF1 889 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 DHX36Q9H2U1 1008 aaKnown RBP14.59□□□□□ -0.07
CSPG4-201ENST00000308508 MLH3Q9UHC1 1453 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 NEMP1O14524 444 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 GPC3P51654 580 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 COASYQ13057 564 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 SH3TC2Q8TF17 1288 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 PGBD4Q96DM1 585 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 ASIC4Q96FT7 647 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 USP27XA6NNY8 438 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 AIM2O14862 343 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 ITIH2P19823 946 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 UBE2SQ16763 222 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 ASAP3Q8TDY4 903 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 CARD9Q9H257 536 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 PCSK1NQ9UHG2 260 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 PSMD3O43242 534 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 ATP6V1B1P15313 513 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 PLA2G4AP47712 749 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 TSPY1Q01534 308 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 KYNUQ16719 465 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 TMC5Q6UXY8 1006 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 TAS2R42Q7RTR8 314 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 XPO6Q96QU8 1125 aaKnown RBP14.59□□□□□ -0.07
CSPG4-201ENST00000308508 C17orf80Q9BSJ5 609 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 GREM2Q9H772 168 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 IGF2BP3O00425 579 aaKnown RBP eCLIP14.59□□□□□ -0.07
CSPG4-201ENST00000308508 FKBP9O95302 570 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 NNMTP40261 264 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 EIF3EP60228 445 aaKnown RBP14.59□□□□□ -0.07
CSPG4-201ENST00000308508 EAPPQ56P03 285 aaPredicted RBP14.59□□□□□ -0.07
CSPG4-201ENST00000308508 THEMIS2Q5TEJ8 643 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 FKBP9P1Q75LS8 142 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 FAM160B2Q86V87 743 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 SULF1Q8IWU6 871 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 TBC1D19Q8N5T2 526 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 AFF4Q9UHB7 1163 aaKnown RBP14.59□□□□□ -0.07
CSPG4-201ENST00000308508 ZHX2Q9Y6X8 837 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 CLASP1Q7Z460 1538 aa14.59□□□□□ -0.07
CSPG4-201ENST00000308508 TTC26A0AVF1 554 aa14.58□□□□□ -0.07
CSPG4-201ENST00000308508 RGS5O15539 181 aa14.58□□□□□ -0.07
CSPG4-201ENST00000308508 RTN2O75298 545 aa14.58□□□□□ -0.07
CSPG4-201ENST00000308508 SLC9A5Q14940 896 aa14.58□□□□□ -0.07
CSPG4-201ENST00000308508 SLC27A3Q5K4L6 730 aa14.58□□□□□ -0.07
CSPG4-201ENST00000308508 TTC30BQ8N4P2 665 aa14.58□□□□□ -0.07
CSPG4-201ENST00000308508 SYNMO15061 1565 aa14.58□□□□□ -0.07
CSPG4-201ENST00000308508 M0QYV0 167 aa14.58□□□□□ -0.08
CSPG4-201ENST00000308508 USP1O94782 785 aa14.58□□□□□ -0.08
CSPG4-201ENST00000308508 PSMA4P25789 261 aaKnown RBP14.58□□□□□ -0.08
CSPG4-201ENST00000308508 RCOR2Q8IZ40 523 aa14.58□□□□□ -0.08
CSPG4-201ENST00000308508 TRIM63Q969Q1 353 aa14.58□□□□□ -0.08
CSPG4-201ENST00000308508 ROPN1BQ9BZX4 212 aaPredicted RBP14.58□□□□□ -0.08
CSPG4-201ENST00000308508 ROPN1Q9HAT0 212 aaPredicted RBP14.58□□□□□ -0.08
CSPG4-201ENST00000308508 HSPBP1Q9NZL4 362 aa14.58□□□□□ -0.08
CSPG4-201ENST00000308508 MAP3K13O43283 966 aa14.58□□□□□ -0.08
CSPG4-201ENST00000308508 ASZ1Q8WWH4 475 aa14.58□□□□□ -0.08
CSPG4-201ENST00000308508 MOSPD1Q9UJG1 213 aa14.58□□□□□ -0.08
CSPG4-201ENST00000308508 SPAG6O75602 509 aa14.58□□□□□ -0.08
CSPG4-201ENST00000308508 ZNF200P98182 395 aaPredicted RBP14.58□□□□□ -0.08
CSPG4-201ENST00000308508 LRRC74AQ0VAA2 488 aa14.58□□□□□ -0.08
CSPG4-201ENST00000308508 SF3B3Q15393 1217 aaKnown RBP14.58□□□□□ -0.08
CSPG4-201ENST00000308508 NOD2Q9HC29 1040 aa14.58□□□□□ -0.08
CSPG4-201ENST00000308508 PEG3Q9GZU2 1588 aa14.58□□□□□ -0.08
CSPG4-201ENST00000308508 ERFP50548 548 aa14.58□□□□□ -0.08
CSPG4-201ENST00000308508 CDH6P55285 790 aa14.58□□□□□ -0.08
CSPG4-201ENST00000308508 P3H1Q32P28 736 aa14.58□□□□□ -0.08
CSPG4-201ENST00000308508 C3orf20Q8ND61 904 aa14.58□□□□□ -0.08
CSPG4-201ENST00000308508 MAML3Q96JK9 1138 aa14.58□□□□□ -0.08
CSPG4-201ENST00000308508 ADGRA3Q8IWK6 1321 aa14.58□□□□□ -0.08
CSPG4-201ENST00000308508 TRIM49P0CI25 452 aa14.58□□□□□ -0.08
CSPG4-201ENST00000308508 TRIM49CP0CI26 452 aa14.58□□□□□ -0.08
CSPG4-201ENST00000308508 MAPK6Q16659 721 aa14.58□□□□□ -0.08
CSPG4-201ENST00000308508 FARP1Q9Y4F1 1045 aaPredicted RBP14.58□□□□□ -0.08
CSPG4-201ENST00000308508 SFI1A8K8P3 1242 aa14.57□□□□□ -0.08
CSPG4-201ENST00000308508 F5H423 210 aaPredicted RBP14.57□□□□□ -0.08
CSPG4-201ENST00000308508 CAND2O75155 1236 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms