RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 DNAH14Q0VDD8 3507 aa16.33■□□□□ 0.2
CCDC88B-201ENST00000301897 CASTOR2A6NHX0 329 aa16.32■□□□□ 0.2
CCDC88B-201ENST00000301897 SPTLC1O15269 473 aa16.32■□□□□ 0.2
CCDC88B-201ENST00000301897 KIF4AO95239 1232 aa16.32■□□□□ 0.2
CCDC88B-201ENST00000301897 TPRP12270 2363 aaKnown RBP16.32■□□□□ 0.2
CCDC88B-201ENST00000301897 TXKP42681 527 aa16.32■□□□□ 0.2
CCDC88B-201ENST00000301897 RBM25P49756 843 aaKnown RBP16.32■□□□□ 0.2
CCDC88B-201ENST00000301897 MLF2Q15773 248 aaPredicted RBP16.32■□□□□ 0.2
CCDC88B-201ENST00000301897 MAPK6Q16659 721 aa16.32■□□□□ 0.2
CCDC88B-201ENST00000301897 PARM1Q6UWI2 310 aa16.32■□□□□ 0.2
CCDC88B-201ENST00000301897 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.32■□□□□ 0.2
CCDC88B-201ENST00000301897 APBB1IPQ7Z5R6 666 aaPredicted RBP16.32■□□□□ 0.2
CCDC88B-201ENST00000301897 RABGGTAQ92696 567 aa16.32■□□□□ 0.2
CCDC88B-201ENST00000301897 FGF13Q92913 245 aa16.32■□□□□ 0.2
CCDC88B-201ENST00000301897 RMDN1Q96DB5 314 aa16.32■□□□□ 0.2
CCDC88B-201ENST00000301897 DDX23Q9BUQ8 820 aaKnown RBP16.32■□□□□ 0.2
CCDC88B-201ENST00000301897 FOXQ1Q9C009 403 aa16.32■□□□□ 0.2
CCDC88B-201ENST00000301897 TUFT1Q9NNX1 390 aa16.32■□□□□ 0.2
CCDC88B-201ENST00000301897 GJB4Q9NTQ9 266 aa16.32■□□□□ 0.2
CCDC88B-201ENST00000301897 TPCN1Q9ULQ1 816 aa16.32■□□□□ 0.2
CCDC88B-201ENST00000301897 FAM205CA6NFA0 338 aa16.31■□□□□ 0.2
CCDC88B-201ENST00000301897 TMEM189-UBE2V1I3L0A0 370 aa16.31■□□□□ 0.2
CCDC88B-201ENST00000301897 PTGESO14684 152 aa16.31■□□□□ 0.2
CCDC88B-201ENST00000301897 LAMTOR5O43504 91 aa16.31■□□□□ 0.2
CCDC88B-201ENST00000301897 RECQL4O94761 1208 aa16.31■□□□□ 0.2
CCDC88B-201ENST00000301897 ATP2B1P20020 1258 aa16.31■□□□□ 0.2
CCDC88B-201ENST00000301897 PRPF4BQ13523 1007 aaKnown RBP16.31■□□□□ 0.2
CCDC88B-201ENST00000301897 RAB33AQ14088 237 aa16.31■□□□□ 0.2
CCDC88B-201ENST00000301897 DCAF4L1Q3SXM0 396 aa16.31■□□□□ 0.2
CCDC88B-201ENST00000301897 SLC44A4Q53GD3 710 aa16.31■□□□□ 0.2
CCDC88B-201ENST00000301897 AXDND1Q5T1B0 1012 aaPredicted RBP16.31■□□□□ 0.2
CCDC88B-201ENST00000301897 POTEGQ6S5H5 508 aa16.31■□□□□ 0.2
CCDC88B-201ENST00000301897 GPR161Q8N6U8 529 aaKnown RBP16.31■□□□□ 0.2
CCDC88B-201ENST00000301897 HASPINQ8TF76 798 aa16.31■□□□□ 0.2
CCDC88B-201ENST00000301897 MTMR9Q96QG7 549 aa16.31■□□□□ 0.2
CCDC88B-201ENST00000301897 NACC1Q96RE7 527 aa16.31■□□□□ 0.2
CCDC88B-201ENST00000301897 NELL2Q99435 816 aa16.31■□□□□ 0.2
CCDC88B-201ENST00000301897 PAAF1Q9BRP4 392 aa16.31■□□□□ 0.2
CCDC88B-201ENST00000301897 PDZD7Q9H5P4 517 aa16.31■□□□□ 0.2
CCDC88B-201ENST00000301897 POLIQ9UNA4 740 aa16.31■□□□□ 0.2
CCDC88B-201ENST00000301897 EPG5Q9HCE0 2579 aa16.3■□□□□ 0.2
CCDC88B-201ENST00000301897 ACKR2O00590 384 aa16.3■□□□□ 0.2
CCDC88B-201ENST00000301897 NCAM2O15394 837 aa16.3■□□□□ 0.2
CCDC88B-201ENST00000301897 CCL16O15467 120 aa16.3■□□□□ 0.2
CCDC88B-201ENST00000301897 TRAPPC3O43617 180 aa16.3■□□□□ 0.2
CCDC88B-201ENST00000301897 CTDNEP1O95476 244 aa16.3■□□□□ 0.2
CCDC88B-201ENST00000301897 PRKCBP05771 671 aa16.3■□□□□ 0.2
CCDC88B-201ENST00000301897 GLULP15104 373 aa16.3■□□□□ 0.2
CCDC88B-201ENST00000301897 SDHBP21912 280 aa16.3■□□□□ 0.2
CCDC88B-201ENST00000301897 SNW1Q13573 536 aaKnown RBP16.3■□□□□ 0.2
CCDC88B-201ENST00000301897 TRIM29Q14134 588 aa16.3■□□□□ 0.2
CCDC88B-201ENST00000301897 PPP2R5AQ15172 486 aa16.3■□□□□ 0.2
CCDC88B-201ENST00000301897 PABPC1LQ4VXU2 614 aaKnown RBP16.3■□□□□ 0.2
CCDC88B-201ENST00000301897 SLC7A14Q8TBB6 771 aa16.3■□□□□ 0.2
CCDC88B-201ENST00000301897 UROC1Q96N76 676 aa16.3■□□□□ 0.2
CCDC88B-201ENST00000301897 RPP25Q9BUL9 199 aaKnown RBP16.3■□□□□ 0.2
CCDC88B-201ENST00000301897 SPATA6Q9NWH7 488 aaPredicted RBP16.3■□□□□ 0.2
CCDC88B-201ENST00000301897 SNTG2Q9NY99 539 aa16.3■□□□□ 0.2
CCDC88B-201ENST00000301897 GDE1Q9NZC3 331 aa16.3■□□□□ 0.2
CCDC88B-201ENST00000301897 PCDHGA2Q9Y5H1 932 aa16.3■□□□□ 0.2
CCDC88B-201ENST00000301897 VWA8A3KMH1 1905 aa16.29■□□□□ 0.2
CCDC88B-201ENST00000301897 F5P12259 2224 aa16.29■□□□□ 0.2
CCDC88B-201ENST00000301897 FGFR3P22607 806 aa16.29■□□□□ 0.2
CCDC88B-201ENST00000301897 OR1D2P34982 312 aa16.29■□□□□ 0.2
CCDC88B-201ENST00000301897 NAMPTP43490 491 aa16.29■□□□□ 0.2
CCDC88B-201ENST00000301897 EFNA5P52803 228 aa16.29■□□□□ 0.2
CCDC88B-201ENST00000301897 ANAPC15P60006 121 aa16.29■□□□□ 0.2
CCDC88B-201ENST00000301897 NTHL1P78549 312 aa16.29■□□□□ 0.2
CCDC88B-201ENST00000301897 UBXN2BQ14CS0 331 aa16.29■□□□□ 0.2
CCDC88B-201ENST00000301897 NAB2Q15742 525 aa16.29■□□□□ 0.2
CCDC88B-201ENST00000301897 ZBTB41Q5SVQ8 909 aa16.29■□□□□ 0.2
CCDC88B-201ENST00000301897 ANKS3Q6ZW76 656 aa16.29■□□□□ 0.2
CCDC88B-201ENST00000301897 MAEAQ7L5Y9 396 aa16.29■□□□□ 0.2
CCDC88B-201ENST00000301897 SUMF1Q8NBK3 374 aa16.29■□□□□ 0.2
CCDC88B-201ENST00000301897 ERMNQ8TAM6 284 aa16.29■□□□□ 0.2
CCDC88B-201ENST00000301897 DEPTORQ8TB45 409 aa16.29■□□□□ 0.2
CCDC88B-201ENST00000301897 ITFG1Q8TB96 612 aa16.29■□□□□ 0.2
CCDC88B-201ENST00000301897 ATRIPQ8WXE1 791 aa16.29■□□□□ 0.2
CCDC88B-201ENST00000301897 SECISBP2LQ93073 1101 aaKnown RBP16.29■□□□□ 0.2
CCDC88B-201ENST00000301897 POLR3CQ9BUI4 534 aaPredicted RBP16.29■□□□□ 0.2
CCDC88B-201ENST00000301897 GPRC5CQ9NQ84 441 aa16.29■□□□□ 0.2
CCDC88B-201ENST00000301897 AVENQ9NQS1 362 aaPredicted RBP16.29■□□□□ 0.2
CCDC88B-201ENST00000301897 MTRRQ9UBK8 725 aa16.29■□□□□ 0.2
CCDC88B-201ENST00000301897 CACNG4Q9UBN1 327 aa16.29■□□□□ 0.2
CCDC88B-201ENST00000301897 MRPS17Q9Y2R5 130 aaKnown RBP16.29■□□□□ 0.2
CCDC88B-201ENST00000301897 SPTBN2O15020 2390 aa16.29■□□□□ 0.2
CCDC88B-201ENST00000301897 CACNA1BQ00975 2339 aa16.29■□□□□ 0.2
CCDC88B-201ENST00000301897 ARHGEF35A5YM69 484 aa16.28■□□□□ 0.2
CCDC88B-201ENST00000301897 POTEMA6NI47 508 aa16.28■□□□□ 0.2
CCDC88B-201ENST00000301897 FAM170BA6NMN3 283 aa16.28■□□□□ 0.2
CCDC88B-201ENST00000301897 BTBD18B2RXH4 712 aa16.28■□□□□ 0.2
CCDC88B-201ENST00000301897 ECI2O75521 394 aa16.28■□□□□ 0.2
CCDC88B-201ENST00000301897 SPATA31C1P0DKV0 1188 aa16.28■□□□□ 0.2
CCDC88B-201ENST00000301897 MUTP22033 750 aa16.28■□□□□ 0.2
CCDC88B-201ENST00000301897 CATSPER3Q86XQ3 398 aa16.28■□□□□ 0.2
CCDC88B-201ENST00000301897 NPAS3Q8IXF0 933 aa16.28■□□□□ 0.2
CCDC88B-201ENST00000301897 DIS3L2Q8IYB7 885 aaKnown RBP16.28■□□□□ 0.2
CCDC88B-201ENST00000301897 MAML2Q8IZL2 1156 aaPredicted RBP16.28■□□□□ 0.2
CCDC88B-201ENST00000301897 IFT74Q96LB3 600 aa16.28■□□□□ 0.2
CCDC88B-201ENST00000301897 LTB4R2Q9NPC1 389 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms