RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 EXT2Q93063 718 aa20.22■□□□□ 0.83
UPF1-201ENST00000262803 GRAMD1AQ96CP6 724 aa20.22■□□□□ 0.83
UPF1-201ENST00000262803 FBXL5Q9UKA1 691 aa20.22■□□□□ 0.83
UPF1-201ENST00000262803 TAF6LQ9Y6J9 622 aa20.22■□□□□ 0.83
UPF1-201ENST00000262803 EMSYQ7Z589 1322 aa20.22■□□□□ 0.83
UPF1-201ENST00000262803 KRT16P08779 473 aa20.22■□□□□ 0.83
UPF1-201ENST00000262803 CXorf38Q8TB03 319 aa20.22■□□□□ 0.83
UPF1-201ENST00000262803 DCUN1D1Q96GG9 259 aa20.22■□□□□ 0.83
UPF1-201ENST00000262803 LRRC1Q9BTT6 524 aa20.22■□□□□ 0.83
UPF1-201ENST00000262803 USP49Q70CQ1 688 aa20.22■□□□□ 0.83
UPF1-201ENST00000262803 NLRP14Q86W24 1093 aa20.22■□□□□ 0.83
UPF1-201ENST00000262803 LRRC43Q8N309 656 aa20.22■□□□□ 0.83
UPF1-201ENST00000262803 SH3KBP1Q96B97 665 aa20.22■□□□□ 0.83
UPF1-201ENST00000262803 HEY1Q9Y5J3 304 aa20.22■□□□□ 0.83
UPF1-201ENST00000262803 PDS5AQ29RF7 1337 aaKnown RBP20.22■□□□□ 0.83
UPF1-201ENST00000262803 REREQ9P2R6 1566 aa20.22■□□□□ 0.83
UPF1-201ENST00000262803 FAM95CA0A1B0GW59 222 aa20.22■□□□□ 0.83
UPF1-201ENST00000262803 CFAP69A5D8W1 941 aa20.22■□□□□ 0.83
UPF1-201ENST00000262803 SRGNP10124 158 aa20.22■□□□□ 0.83
UPF1-201ENST00000262803 NR1I3Q14994 352 aa20.22■□□□□ 0.83
UPF1-201ENST00000262803 RASGRP2Q7LDG7 609 aa20.22■□□□□ 0.83
UPF1-201ENST00000262803 PPHLN1Q8NEY8 458 aaKnown RBP20.22■□□□□ 0.83
UPF1-201ENST00000262803 ZNF512BQ96KM6 892 aaPredicted RBP20.22■□□□□ 0.83
UPF1-201ENST00000262803 NSMCE4AQ9NXX6 385 aa20.22■□□□□ 0.83
UPF1-201ENST00000262803 EEF1DP29692 281 aaKnown RBP20.21■□□□□ 0.83
UPF1-201ENST00000262803 HHIPL2Q6UWX4 724 aa20.21■□□□□ 0.83
UPF1-201ENST00000262803 PATL1Q86TB9 770 aaKnown RBP20.21■□□□□ 0.83
UPF1-201ENST00000262803 DCP1BQ8IZD4 617 aaKnown RBP20.21■□□□□ 0.83
UPF1-201ENST00000262803 TSPAN17Q96FV3 270 aa20.21■□□□□ 0.83
UPF1-201ENST00000262803 GTSE1Q9NYZ3 720 aa20.21■□□□□ 0.83
UPF1-201ENST00000262803 AMACRQ9UHK6 382 aa20.21■□□□□ 0.83
UPF1-201ENST00000262803 MCF2P10911 925 aa20.21■□□□□ 0.83
UPF1-201ENST00000262803 FDPSP14324 419 aaKnown RBP20.21■□□□□ 0.83
UPF1-201ENST00000262803 UGP2Q16851 508 aa20.21■□□□□ 0.83
UPF1-201ENST00000262803 ITIH6Q6UXX5 1313 aa20.21■□□□□ 0.83
UPF1-201ENST00000262803 PIK3R2O00459 728 aa20.21■□□□□ 0.83
UPF1-201ENST00000262803 TRPA1O75762 1119 aa20.21■□□□□ 0.83
UPF1-201ENST00000262803 C4orf22Q6V702 233 aa20.21■□□□□ 0.83
UPF1-201ENST00000262803 HAUS6Q7Z4H7 955 aa20.21■□□□□ 0.83
UPF1-201ENST00000262803 RDM1Q8NG50 284 aa20.21■□□□□ 0.83
UPF1-201ENST00000262803 TEKT4Q8WW24 435 aa20.21■□□□□ 0.83
UPF1-201ENST00000262803 EGFL8Q99944 293 aa20.21■□□□□ 0.83
UPF1-201ENST00000262803 SPATS2LQ9NUQ6 558 aaKnown RBP20.21■□□□□ 0.83
UPF1-201ENST00000262803 PCDHGB4Q9UN71 923 aa20.21■□□□□ 0.83
UPF1-201ENST00000262803 GYG2O15488 501 aa20.21■□□□□ 0.83
UPF1-201ENST00000262803 ACADSBP45954 432 aa20.21■□□□□ 0.83
UPF1-201ENST00000262803 AARSP49588 968 aaKnown RBP eCLIP20.21■□□□□ 0.834e-6■■■■□ 24
UPF1-201ENST00000262803 ABCE1P61221 599 aaKnown RBP20.21■□□□□ 0.83
UPF1-201ENST00000262803 AP1ARQ63HQ0 302 aa20.21■□□□□ 0.83
UPF1-201ENST00000262803 PBXIP1Q96AQ6 731 aa20.21■□□□□ 0.83
UPF1-201ENST00000262803 PLEKHA5Q9HAU0 1116 aa20.21■□□□□ 0.83
UPF1-201ENST00000262803 E2F6O75461 281 aa20.2■□□□□ 0.82
UPF1-201ENST00000262803 RHOBTB3O94955 611 aa20.2■□□□□ 0.82
UPF1-201ENST00000262803 ABCF3Q9NUQ8 709 aa20.2■□□□□ 0.82
UPF1-201ENST00000262803 TXNP10599 105 aaKnown RBP20.2■□□□□ 0.82
UPF1-201ENST00000262803 EFTUD2Q15029 972 aaKnown RBP eCLIP20.2■□□□□ 0.824e-7■■■■■ 28.9
UPF1-201ENST00000262803 NBPF9Q3BBW0 867 aa20.2■□□□□ 0.82
UPF1-201ENST00000262803 FAM102AQ5T9C2 384 aaPredicted RBP20.2■□□□□ 0.82
UPF1-201ENST00000262803 MEI1Q5TIA1 1274 aa20.2■□□□□ 0.82
UPF1-201ENST00000262803 SLC26A7Q8TE54 656 aa20.2■□□□□ 0.82
UPF1-201ENST00000262803 PCSK1NQ9UHG2 260 aa20.2■□□□□ 0.82
UPF1-201ENST00000262803 HACL1Q9UJ83 578 aa20.2■□□□□ 0.82
UPF1-201ENST00000262803 ZNF185O15231 689 aa20.2■□□□□ 0.82
UPF1-201ENST00000262803 ELOA2Q8IYF1 753 aaPredicted RBP20.2■□□□□ 0.82
UPF1-201ENST00000262803 TC2NQ8N9U0 490 aa20.2■□□□□ 0.82
UPF1-201ENST00000262803 STKLD1Q8NE28 680 aa20.2■□□□□ 0.82
UPF1-201ENST00000262803 PDCD6IPQ8WUM4 868 aaKnown RBP20.2■□□□□ 0.82
UPF1-201ENST00000262803 RNPC3Q96LT9 517 aaKnown RBP20.2■□□□□ 0.82
UPF1-201ENST00000262803 UVRAGQ9P2Y5 699 aa20.2■□□□□ 0.82
UPF1-201ENST00000262803 SERPINB4P48594 390 aa20.2■□□□□ 0.82
UPF1-201ENST00000262803 SFSWAPQ12872 951 aaKnown RBP20.2■□□□□ 0.82
UPF1-201ENST00000262803 CHST13Q8NET6 341 aa20.2■□□□□ 0.82
UPF1-201ENST00000262803 FOXP3Q9BZS1 431 aa20.2■□□□□ 0.82
UPF1-201ENST00000262803 VPS11Q9H270 941 aa20.2■□□□□ 0.82
UPF1-201ENST00000262803 SCHIP1Q9P0W5 487 aaPredicted RBP20.2■□□□□ 0.82
UPF1-201ENST00000262803 CHD1O14646 1710 aa20.19■□□□□ 0.82
UPF1-201ENST00000262803 PXDNLA1KZ92 1463 aa20.19■□□□□ 0.82
UPF1-201ENST00000262803 RTN2O75298 545 aa20.19■□□□□ 0.82
UPF1-201ENST00000262803 APPL2Q8NEU8 664 aa20.19■□□□□ 0.82
UPF1-201ENST00000262803 CYTH2Q99418 400 aa20.19■□□□□ 0.82
UPF1-201ENST00000262803 H0Y3Z8 333 aa20.19■□□□□ 0.82
UPF1-201ENST00000262803 CCDC22O60826 627 aa20.19■□□□□ 0.82
UPF1-201ENST00000262803 NMT1P30419 496 aaKnown RBP20.19■□□□□ 0.82
UPF1-201ENST00000262803 MAP3K10Q02779 954 aa20.19■□□□□ 0.82
UPF1-201ENST00000262803 CAPRIN1Q14444 709 aaKnown RBP20.19■□□□□ 0.82
UPF1-201ENST00000262803 SLC18A3Q16572 532 aa20.19■□□□□ 0.82
UPF1-201ENST00000262803 C7orf25Q9BPX7 421 aa20.19■□□□□ 0.82
UPF1-201ENST00000262803 AGPAT5Q9NUQ2 364 aa20.19■□□□□ 0.82
UPF1-201ENST00000262803 YWHABP31946 246 aaKnown RBP20.19■□□□□ 0.82
UPF1-201ENST00000262803 GPS1Q13098 491 aa20.19■□□□□ 0.82
UPF1-201ENST00000262803 P3H1Q32P28 736 aa20.19■□□□□ 0.82
UPF1-201ENST00000262803 ERCC6L2Q5T890 1561 aa20.19■□□□□ 0.82
UPF1-201ENST00000262803 RCOR2Q8IZ40 523 aa20.19■□□□□ 0.82
UPF1-201ENST00000262803 SNX5Q9Y5X3 404 aa20.19■□□□□ 0.82
UPF1-201ENST00000262803 FBXW4P57775 412 aa20.19■□□□□ 0.82
UPF1-201ENST00000262803 GRAMD1BQ3KR37 738 aa20.19■□□□□ 0.82
UPF1-201ENST00000262803 TEX2Q8IWB9 1127 aa20.19■□□□□ 0.82
UPF1-201ENST00000262803 SEPT1Q8WYJ6 367 aa20.19■□□□□ 0.82
UPF1-201ENST00000262803 MAP3K14Q99558 947 aa20.19■□□□□ 0.82
UPF1-201ENST00000262803 RGL1Q9NZL6 768 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms