RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 FUCA2Q9BTY2 467 aa18.3■□□□□ 0.52
SDCBP-201ENST00000260130 TOPORSQ9NS56 1045 aaPredicted RBP18.3■□□□□ 0.52
SDCBP-201ENST00000260130 COL6A3P12111 3177 aa18.29■□□□□ 0.52
SDCBP-201ENST00000260130 EYSQ5T1H1 3165 aa18.29■□□□□ 0.52
SDCBP-201ENST00000260130 A0A0B4J269 797 aa18.29■□□□□ 0.52
SDCBP-201ENST00000260130 KLRC4O43908 158 aa18.29■□□□□ 0.52
SDCBP-201ENST00000260130 PRPF6O94906 941 aaKnown RBP18.29■□□□□ 0.52
SDCBP-201ENST00000260130 ALDH2P05091 517 aa18.29■□□□□ 0.52
SDCBP-201ENST00000260130 GALTP07902 379 aa18.29■□□□□ 0.52
SDCBP-201ENST00000260130 PTPROQ16827 1216 aa18.29■□□□□ 0.52
SDCBP-201ENST00000260130 SLFN12LQ6IEE8 588 aa18.29■□□□□ 0.52
SDCBP-201ENST00000260130 GLIS3Q8NEA6 775 aa18.29■□□□□ 0.52
SDCBP-201ENST00000260130 LMAN2LQ9H0V9 348 aa18.29■□□□□ 0.52
SDCBP-201ENST00000260130 TMEM206Q9H813 350 aa18.29■□□□□ 0.52
SDCBP-201ENST00000260130 SPG21Q9NZD8 308 aa18.29■□□□□ 0.52
SDCBP-201ENST00000260130 NLRC5Q86WI3 1866 aa18.28■□□□□ 0.52
SDCBP-201ENST00000260130 NT5C1B-RDH14C9J2C7 533 aa18.28■□□□□ 0.52
SDCBP-201ENST00000260130 DYNC1I1O14576 645 aa18.28■□□□□ 0.52
SDCBP-201ENST00000260130 B4GALT3O60512 393 aa18.28■□□□□ 0.52
SDCBP-201ENST00000260130 PLCB3Q01970 1234 aa18.28■□□□□ 0.52
SDCBP-201ENST00000260130 GRIK3Q13003 919 aa18.28■□□□□ 0.52
SDCBP-201ENST00000260130 SEZ6Q53EL9 994 aa18.28■□□□□ 0.52
SDCBP-201ENST00000260130 COLGALT2Q8IYK4 626 aa18.28■□□□□ 0.52
SDCBP-201ENST00000260130 SYCP3Q8IZU3 236 aa18.28■□□□□ 0.52
SDCBP-201ENST00000260130 MRPL38Q96DV4 380 aaKnown RBP18.28■□□□□ 0.52
SDCBP-201ENST00000260130 TMEM175Q9BSA9 504 aa18.28■□□□□ 0.52
SDCBP-201ENST00000260130 CXCL16Q9H2A7 254 aa18.28■□□□□ 0.52
SDCBP-201ENST00000260130 IKZF4Q9H2S9 585 aa18.28■□□□□ 0.52
SDCBP-201ENST00000260130 STYXL1Q9Y6J8 313 aa18.28■□□□□ 0.52
SDCBP-201ENST00000260130 TISP43B9A030 160 aa18.28■□□□□ 0.52
SDCBP-201ENST00000260130 PTGESO14684 152 aa18.28■□□□□ 0.52
SDCBP-201ENST00000260130 EIF3DO15371 548 aaKnown RBP eCLIP18.28■□□□□ 0.52
SDCBP-201ENST00000260130 THP07101 528 aa18.28■□□□□ 0.52
SDCBP-201ENST00000260130 SLC11A1P49279 550 aa18.28■□□□□ 0.52
SDCBP-201ENST00000260130 KRT17Q04695 432 aa18.28■□□□□ 0.52
SDCBP-201ENST00000260130 DSC1Q08554 894 aa18.28■□□□□ 0.52
SDCBP-201ENST00000260130 SLC39A11Q8N1S5 342 aa18.28■□□□□ 0.52
SDCBP-201ENST00000260130 POF1BQ8WVV4 589 aa18.28■□□□□ 0.52
SDCBP-201ENST00000260130 MSTO1Q9BUK6 570 aa18.28■□□□□ 0.52
SDCBP-201ENST00000260130 OGTO15294 1046 aa18.27■□□□□ 0.52
SDCBP-201ENST00000260130 CLTAP09496 248 aa18.27■□□□□ 0.52
SDCBP-201ENST00000260130 PRR29P0C7W0 189 aa18.27■□□□□ 0.52
SDCBP-201ENST00000260130 UBE3AQ05086 875 aa18.27■□□□□ 0.52
SDCBP-201ENST00000260130 DPYDQ12882 1025 aa18.27■□□□□ 0.52
SDCBP-201ENST00000260130 PSMD2Q13200 908 aa18.27■□□□□ 0.52
SDCBP-201ENST00000260130 POSTNQ15063 836 aa18.27■□□□□ 0.52
SDCBP-201ENST00000260130 KYAT1Q16773 422 aa18.27■□□□□ 0.52
SDCBP-201ENST00000260130 KMT5BQ4FZB7 885 aa18.27■□□□□ 0.52
SDCBP-201ENST00000260130 ALKAL1Q6UXT8 129 aa18.27■□□□□ 0.52
SDCBP-201ENST00000260130 EPM2AIP1Q7L775 607 aaPredicted RBP18.27■□□□□ 0.52
SDCBP-201ENST00000260130 ZNF507Q8TCN5 953 aa18.27■□□□□ 0.52
SDCBP-201ENST00000260130 SLC39A2Q9NP94 309 aa18.27■□□□□ 0.52
SDCBP-201ENST00000260130 EXOC1Q9NV70 894 aa18.27■□□□□ 0.52
SDCBP-201ENST00000260130 FAN1Q9Y2M0 1017 aa18.27■□□□□ 0.52
SDCBP-201ENST00000260130 NR1I2O75469 434 aa18.27■□□□□ 0.51
SDCBP-201ENST00000260130 CCDC192P0DO97 292 aa18.27■□□□□ 0.51
SDCBP-201ENST00000260130 DNAJB1P25685 340 aa18.27■□□□□ 0.51
SDCBP-201ENST00000260130 XKR4Q5GH76 650 aa18.27■□□□□ 0.51
SDCBP-201ENST00000260130 MAFAQ8NHW3 353 aaPredicted RBP18.27■□□□□ 0.51
SDCBP-201ENST00000260130 TIGD1Q96MW7 591 aa18.27■□□□□ 0.51
SDCBP-201ENST00000260130 PUF60Q9UHX1 559 aaKnown RBP18.27■□□□□ 0.51
SDCBP-201ENST00000260130 KIAA1671Q9BY89 1806 aa18.26■□□□□ 0.51
SDCBP-201ENST00000260130 NRP1O14786 923 aa18.26■□□□□ 0.51
SDCBP-201ENST00000260130 FAM189A1O60320 539 aa18.26■□□□□ 0.51
SDCBP-201ENST00000260130 RPN1P04843 607 aaKnown RBP18.26■□□□□ 0.51
SDCBP-201ENST00000260130 ADSSP30520 456 aa18.26■□□□□ 0.51
SDCBP-201ENST00000260130 CAMK1Q14012 370 aa18.26■□□□□ 0.51
SDCBP-201ENST00000260130 MICALL1Q8N3F8 863 aa18.26■□□□□ 0.51
SDCBP-201ENST00000260130 POMGNT1Q8WZA1 660 aa18.26■□□□□ 0.51
SDCBP-201ENST00000260130 TMEM169Q96HH4 297 aa18.26■□□□□ 0.51
SDCBP-201ENST00000260130 IGSF21Q96ID5 467 aa18.26■□□□□ 0.51
SDCBP-201ENST00000260130 SNX27Q96L92 541 aa18.26■□□□□ 0.51
SDCBP-201ENST00000260130 AGO2Q9UKV8 859 aaKnown RBP18.26■□□□□ 0.51
SDCBP-201ENST00000260130 LZTS1Q9Y250 596 aa18.26■□□□□ 0.51
SDCBP-201ENST00000260130 COL4A4P53420 1690 aaPredicted RBP18.25■□□□□ 0.51
SDCBP-201ENST00000260130 SMIM28A0A1B0GU29 152 aa18.25■□□□□ 0.51
SDCBP-201ENST00000260130 SLC34A2O95436 690 aa18.25■□□□□ 0.51
SDCBP-201ENST00000260130 TPM3P06753 285 aa18.25■□□□□ 0.51
SDCBP-201ENST00000260130 HOXD13P35453 343 aa18.25■□□□□ 0.51
SDCBP-201ENST00000260130 TNFSF9P41273 254 aa18.25■□□□□ 0.51
SDCBP-201ENST00000260130 OR1G1P47890 313 aa18.25■□□□□ 0.51
SDCBP-201ENST00000260130 TUSC3Q13454 348 aa18.25■□□□□ 0.51
SDCBP-201ENST00000260130 SLC10A6Q3KNW5 377 aa18.25■□□□□ 0.51
SDCBP-201ENST00000260130 GLRA4Q5JXX5 417 aa18.25■□□□□ 0.51
SDCBP-201ENST00000260130 MTERF4Q7Z6M4 381 aaKnown RBP18.25■□□□□ 0.51
SDCBP-201ENST00000260130 TMEM173Q86WV6 379 aaPredicted RBP18.25■□□□□ 0.51
SDCBP-201ENST00000260130 SCFD1Q8WVM8 642 aa18.25■□□□□ 0.51
SDCBP-201ENST00000260130 CCDC47Q96A33 483 aaKnown RBP18.25■□□□□ 0.51
SDCBP-201ENST00000260130 STK4Q13043 487 aa18.25■□□□□ 0.51
SDCBP-201ENST00000260130 NAB2Q15742 525 aa18.25■□□□□ 0.51
SDCBP-201ENST00000260130 CCDC85BQ15834 202 aaPredicted RBP18.25■□□□□ 0.51
SDCBP-201ENST00000260130 PPM1EQ8WY54 764 aa18.25■□□□□ 0.51
SDCBP-201ENST00000260130 PPP1R10Q96QC0 940 aaKnown RBP18.25■□□□□ 0.51
SDCBP-201ENST00000260130 PLEKHA5Q9HAU0 1116 aa18.25■□□□□ 0.51
SDCBP-201ENST00000260130 CNTN3Q9P232 1028 aa18.25■□□□□ 0.51
SDCBP-201ENST00000260130 MEFVO15553 781 aaPredicted RBP18.24■□□□□ 0.51
SDCBP-201ENST00000260130 CXCL8P10145 99 aa18.24■□□□□ 0.51
SDCBP-201ENST00000260130 KCNE1P15382 129 aa18.24■□□□□ 0.51
SDCBP-201ENST00000260130 DNTTIP2Q5QJE6 756 aaKnown RBP18.24■□□□□ 0.51
SDCBP-201ENST00000260130 ZBTB41Q5SVQ8 909 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms