RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Rpn2Q9DBG6 631 aaKnown RBP12.55□□□□□ -0.4
Trim56-201ENSMUST00000054384 Map3k20Q9ESL4 802 aaKnown RBP12.55□□□□□ -0.4
Trim56-201ENSMUST00000054384 Col15a1O35206 1367 aa12.55□□□□□ -0.4
Trim56-201ENSMUST00000054384 C130060K24RikG3UWA8 416 aa12.55□□□□□ -0.4
Trim56-201ENSMUST00000054384 Gm8298J3QPI0 401 aa12.55□□□□□ -0.4
Trim56-201ENSMUST00000054384 Krt72Q6IME9 520 aa12.55□□□□□ -0.4
Trim56-201ENSMUST00000054384 Ip6k2Q80V72 448 aa12.55□□□□□ -0.4
Trim56-201ENSMUST00000054384 Ppp1r37Q8BKR5 712 aa12.55□□□□□ -0.4
Trim56-201ENSMUST00000054384 Phf20Q8BLG0 1010 aaKnown RBP12.55□□□□□ -0.4
Trim56-201ENSMUST00000054384 Timm50Q9D880 353 aa12.55□□□□□ -0.4
Trim56-201ENSMUST00000054384 Carmil3Q3UFQ8 1375 aa12.55□□□□□ -0.4
Trim56-201ENSMUST00000054384 Wdr49A0A0N4SUK7 710 aa12.55□□□□□ -0.4
Trim56-201ENSMUST00000054384 D1Pas1P16381 660 aa12.55□□□□□ -0.4
Trim56-201ENSMUST00000054384 HpcaP84075 193 aa12.55□□□□□ -0.4
Trim56-201ENSMUST00000054384 HelqQ2VPA6 1069 aa12.55□□□□□ -0.4
Trim56-201ENSMUST00000054384 Nr2c1Q505F1 590 aa12.55□□□□□ -0.4
Trim56-201ENSMUST00000054384 Znf827Q505G8 1078 aa12.55□□□□□ -0.4
Trim56-201ENSMUST00000054384 Mgat1P27808 447 aa12.55□□□□□ -0.4
Trim56-201ENSMUST00000054384 Capza2P47754 286 aa12.55□□□□□ -0.4
Trim56-201ENSMUST00000054384 Pald1P70261 859 aa12.55□□□□□ -0.4
Trim56-201ENSMUST00000054384 Krt40Q6IFX3 439 aa12.55□□□□□ -0.4
Trim56-201ENSMUST00000054384 Ppm1nQ8BGL1 404 aa12.55□□□□□ -0.4
Trim56-201ENSMUST00000054384 Chmp2bQ8BJF9 213 aa12.55□□□□□ -0.4
Trim56-201ENSMUST00000054384 Sfr1Q8BP27 319 aa12.55□□□□□ -0.4
Trim56-201ENSMUST00000054384 Phka2Q8BWJ3 1235 aa12.55□□□□□ -0.4
Trim56-201ENSMUST00000054384 OafQ8QZR4 282 aa12.55□□□□□ -0.4
Trim56-201ENSMUST00000054384 Atp6v1b1Q91YH6 513 aa12.55□□□□□ -0.4
Trim56-201ENSMUST00000054384 Ndel1Q9ERR1 345 aa12.55□□□□□ -0.4
Trim56-201ENSMUST00000054384 Abca8bQ8K440 1620 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Hecw1Q8K4P8 1604 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Gm20911A0A087WSS0 222 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Asprv1Q09PK2 339 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Slc9a1Q61165 820 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Ddr2Q62371 854 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Rpa1Q8VEE4 623 aaKnown RBP12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 NcaldQ91X97 193 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Doc2gQ9ESN1 387 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Dkc1Q9ESX5 509 aaKnown RBP12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Vmn2r121A2BE32 847 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Srp72F8VQC1 671 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Angpt1O08538 498 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Slc2a4P14142 509 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Skap2Q3UND0 358 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 PighQ5M9N4 188 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Cyp2c50Q91X77 490 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Pcdhga4Q91XY4 930 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Usp29Q9ES63 869 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Krt16Q9Z2K1 469 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 4930469K13RikA0A286YDB2 92 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Olfr1123A2AT85 323 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 1700024B05RikE9Q6D7 167 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Guca1aP43081 202 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Lrpap1P55302 360 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Mccc1Q99MR8 717 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Dhx30Q99PU8 1217 aaKnown RBP12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Cap2Q9CYT6 476 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Mtmr1Q9Z2C4 669 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 C87977A2A958 498 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Pramef20B1ARV6 477 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Gm5689F6Y2A6 97 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Gm3264L7N2C5 238 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 C1dO35473 141 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Stag2O35638 1231 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 OatP29758 439 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Pid1Q3UBG2 217 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Senp6Q6P7W0 1132 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Cstf3Q99LI7 717 aaKnown RBP12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Lrrc46Q9DAP0 323 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Xpo7Q9EPK7 1087 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 CtcflA2APF3 636 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Lnx1O70263 728 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Sox6P40645 827 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Msx3P70354 204 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Chn2Q80XD1 332 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Elmo2Q8BHL5 732 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Afap1l1Q8BZI0 768 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Kif20bQ80WE4 1774 aaKnown RBP12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Tex28B1AYN9 409 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Hmgb3O54879 200 aaKnown RBP12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 UrosP51163 265 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Ogfod1Q3U0K8 545 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Zfp454Q80Y34 536 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Noxred1Q9D3S5 366 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Fam162aQ9D6U8 155 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 EtfbQ9DCW4 255 aaKnown RBP12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Arhgef26D3YYY8 869 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Sept1P42209 366 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 SftpdP50404 374 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 PltpP55065 493 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Atp6v1b2P62814 511 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Npas2P97460 816 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 LbrQ3U9G9 626 aaKnown RBP12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Xlr3cQ61806 226 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Stxbp2Q64324 593 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Bcl10Q9Z0H7 233 aa12.54□□□□□ -0.4
Trim56-201ENSMUST00000054384 Nfx1B1AY10 1114 aaKnown RBP12.53□□□□□ -0.4
Trim56-201ENSMUST00000054384 Stat3P42227 770 aaKnown RBP12.53□□□□□ -0.4
Trim56-201ENSMUST00000054384 PtpreP49446 699 aa12.53□□□□□ -0.4
Trim56-201ENSMUST00000054384 McuQ3UMR5 350 aa12.53□□□□□ -0.4
Trim56-201ENSMUST00000054384 Egfl8Q6GUQ1 293 aa12.53□□□□□ -0.4
Retrieved 100 of 22,080 RNA–protein pairs in 46.9 ms