RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 FAM213AQ9BRX8 229 aa6.48□□□□□ -1.37
SCN1A-217ENST00000637988 RUBCNLQ9H714 662 aa6.48□□□□□ -1.37
SCN1A-217ENST00000637988 ZNF556Q9HAH1 456 aa6.48□□□□□ -1.37
SCN1A-217ENST00000637988 TMEM161AQ9NX61 479 aa6.48□□□□□ -1.37
SCN1A-217ENST00000637988 FBXO10Q9UK96 956 aa6.48□□□□□ -1.37
SCN1A-217ENST00000637988 PCDHA10Q9Y5I2 948 aa6.48□□□□□ -1.37
SCN1A-217ENST00000637988 TNS3Q68CZ2 1445 aa6.48□□□□□ -1.37
SCN1A-217ENST00000637988 IGSF1Q8N6C5 1336 aa6.48□□□□□ -1.37
SCN1A-217ENST00000637988 PPP6R2O75170 966 aa6.48□□□□□ -1.37
SCN1A-217ENST00000637988 IGHDP01880 384 aa6.48□□□□□ -1.37
SCN1A-217ENST00000637988 P4HBP07237 508 aaKnown RBP6.48□□□□□ -1.37
SCN1A-217ENST00000637988 KRT16P08779 473 aa6.48□□□□□ -1.37
SCN1A-217ENST00000637988 ATP6V1C1P21283 382 aa6.48□□□□□ -1.37
SCN1A-217ENST00000637988 GNA15P30679 374 aa6.48□□□□□ -1.37
SCN1A-217ENST00000637988 SULT1E1P49888 294 aa6.48□□□□□ -1.37
SCN1A-217ENST00000637988 LIG3P49916 1009 aa6.48□□□□□ -1.37
SCN1A-217ENST00000637988 CACNB3P54284 484 aa6.48□□□□□ -1.37
SCN1A-217ENST00000637988 NPEPPSP55786 919 aa6.48□□□□□ -1.37
SCN1A-217ENST00000637988 MTA1Q13330 715 aa6.48□□□□□ -1.37
SCN1A-217ENST00000637988 WHAMMP3Q1A5X7 153 aa6.48□□□□□ -1.37
SCN1A-217ENST00000637988 LRRC23Q53EV4 343 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-217ENST00000637988 C10orf120Q5SQS8 335 aa6.48□□□□□ -1.37
SCN1A-217ENST00000637988 NOL9Q5SY16 702 aaKnown RBP6.48□□□□□ -1.37
SCN1A-217ENST00000637988 FAM180AQ6UWF9 173 aa6.48□□□□□ -1.37
SCN1A-217ENST00000637988 PLEKHM3Q6ZWE6 761 aa6.48□□□□□ -1.37
SCN1A-217ENST00000637988 GPIHBP1Q8IV16 184 aa6.48□□□□□ -1.37
SCN1A-217ENST00000637988 C10orf53Q8N6V4 93 aa6.48□□□□□ -1.37
SCN1A-217ENST00000637988 SLC20A1Q8WUM9 679 aa6.48□□□□□ -1.37
SCN1A-217ENST00000637988 OSBPL5Q9H0X9 879 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-217ENST00000637988 SLC30A1Q9Y6M5 507 aa6.48□□□□□ -1.37
SCN1A-217ENST00000637988 TTC37Q6PGP7 1564 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 APOL1O14791 398 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 PQBP1O60828 265 aaKnown RBP6.47□□□□□ -1.37
SCN1A-217ENST00000637988 KRT38O76015 456 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 SERPING1P05155 500 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 LTKP29376 864 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 EEF1DP29692 281 aaKnown RBP6.47□□□□□ -1.37
SCN1A-217ENST00000637988 POU5F1BQ06416 359 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 ZBTB17Q13105 803 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 ORC2Q13416 577 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-217ENST00000637988 RHOT2Q8IXI1 618 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 TEX9Q8N6V9 391 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 CHST13Q8NET6 341 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 NKX2-3Q8TAU0 364 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 P2RX5Q93086 422 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 IP6K2Q9UHH9 426 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 DIS3Q9Y2L1 958 aaKnown RBP6.47□□□□□ -1.37
SCN1A-217ENST00000637988 GGPS1O95749 300 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 CHRNA5P30532 468 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 ATN1P54259 1190 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-217ENST00000637988 C21orf59P57076 290 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 RABGAP1LQ5R372 815 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 ZNF658Q5TYW1 1059 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-217ENST00000637988 DSG4Q86SJ6 1040 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 SRLQ86TD4 932 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 SPATS2Q86XZ4 545 aaKnown RBP6.47□□□□□ -1.37
SCN1A-217ENST00000637988 SYTL1Q8IYJ3 562 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 SOCS4Q8WXH5 440 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 MRPL48Q96GC5 212 aaKnown RBP6.47□□□□□ -1.37
SCN1A-217ENST00000637988 MAGEB10Q96LZ2 347 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-217ENST00000637988 CD209Q9NNX6 404 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 LATS2Q9NRM7 1088 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 KANSL3Q9P2N6 904 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 ARHGAP31Q2M1Z3 1444 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 FER1L4A9Z1Z3 1794 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 LMNAP02545 664 aaKnown RBP6.47□□□□□ -1.37
SCN1A-217ENST00000637988 EPB42P16452 691 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 PNPLA4P41247 253 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 ACADSBP45954 432 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 MRPS15P82914 257 aaKnown RBP6.47□□□□□ -1.37
SCN1A-217ENST00000637988 CENPCQ03188 943 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 TOMM20Q15388 145 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 TBC1D25Q3MII6 688 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 SPATA1Q5VX52 437 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 CYFIP1Q7L576 1253 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 CDKL3Q8IVW4 592 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-217ENST00000637988 NSUN7Q8NE18 718 aaKnown RBP6.47□□□□□ -1.37
SCN1A-217ENST00000637988 GLMNQ92990 594 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 MXD3Q9BW11 206 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 TM6SF1Q9BZW5 370 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 DPH5Q9H2P9 285 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 NHEJ1Q9H9Q4 299 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-217ENST00000637988 NEUROD4Q9HD90 331 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 NRBP1Q9UHY1 535 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 LNPEPQ9UIQ6 1025 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 TRIM17Q9Y577 477 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 CYP2C19P33261 490 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 OXCT1P55809 520 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 TGFB2P61812 414 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 PSMC1P62191 440 aaKnown RBP6.47□□□□□ -1.37
SCN1A-217ENST00000637988 PLEKHH3Q7Z736 793 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 KIRREL3Q8IZU9 778 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 RNF149Q8NC42 400 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 STAG1Q8WVM7 1258 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 ARMC7Q9H6L4 198 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 KANSL1LA0AUZ9 987 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 MSCO60682 206 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 CHRNA3P32297 505 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 ARL4CP56559 192 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 PTRHD1Q6GMV3 140 aaKnown RBP6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms