RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 HINFPQ9BQA5 517 aa12.42□□□□□ -0.42
CLN6-217ENST00000636964 JPH2Q9BR39 696 aaPredicted RBP12.42□□□□□ -0.42
CLN6-217ENST00000636964 DHX33Q9H6R0 707 aaKnown RBP12.42□□□□□ -0.42
CLN6-217ENST00000636964 CD248Q9HCU0 757 aa12.42□□□□□ -0.42
CLN6-217ENST00000636964 TOPORSQ9NS56 1045 aaPredicted RBP12.42□□□□□ -0.42
CLN6-217ENST00000636964 NRBP2Q9NSY0 501 aa12.42□□□□□ -0.42
CLN6-217ENST00000636964 SLC18A3Q16572 532 aa12.41□□□□□ -0.42
CLN6-217ENST00000636964 WHAMMP3Q1A5X7 153 aa12.41□□□□□ -0.42
CLN6-217ENST00000636964 CELF3Q5SZQ8 465 aaKnown RBP12.41□□□□□ -0.42
CLN6-217ENST00000636964 C12orf56Q8IXR9 622 aa12.41□□□□□ -0.42
CLN6-217ENST00000636964 TRAPPC12Q8WVT3 735 aa12.41□□□□□ -0.42
CLN6-217ENST00000636964 GPR20Q99678 358 aa12.41□□□□□ -0.42
CLN6-217ENST00000636964 C17orf75Q9HAS0 396 aa12.41□□□□□ -0.42
CLN6-217ENST00000636964 ARID2Q68CP9 1835 aa12.41□□□□□ -0.42
CLN6-217ENST00000636964 ADORA2AP29274 412 aa12.41□□□□□ -0.42
CLN6-217ENST00000636964 JAM2P57087 298 aa12.41□□□□□ -0.42
CLN6-217ENST00000636964 FAM160B1Q5W0V3 765 aa12.41□□□□□ -0.42
CLN6-217ENST00000636964 SLC17A8Q8NDX2 589 aa12.41□□□□□ -0.42
CLN6-217ENST00000636964 ZBTB45Q96K62 511 aaPredicted RBP12.41□□□□□ -0.42
CLN6-217ENST00000636964 CAPZA3Q96KX2 299 aa12.41□□□□□ -0.42
CLN6-217ENST00000636964 FAM213AQ9BRX8 229 aa12.41□□□□□ -0.42
CLN6-217ENST00000636964 MYO6Q9UM54 1294 aa12.41□□□□□ -0.42
CLN6-217ENST00000636964 DLATP10515 647 aaKnown RBP12.4□□□□□ -0.42
CLN6-217ENST00000636964 GTF2A2P52657 109 aa12.4□□□□□ -0.42
CLN6-217ENST00000636964 ARMC3Q5W041 872 aa12.4□□□□□ -0.42
CLN6-217ENST00000636964 ARMCX2Q7L311 632 aa12.4□□□□□ -0.42
CLN6-217ENST00000636964 LRRC71Q8N4P6 559 aa12.4□□□□□ -0.42
CLN6-217ENST00000636964 EHBP1Q8NDI1 1231 aa12.4□□□□□ -0.42
CLN6-217ENST00000636964 LMO3Q8TAP4 145 aa12.4□□□□□ -0.42
CLN6-217ENST00000636964 DEPTORQ8TB45 409 aa12.4□□□□□ -0.42
CLN6-217ENST00000636964 PSMB7Q99436 277 aa12.4□□□□□ -0.42
CLN6-217ENST00000636964 NIFKQ9BYG3 293 aaKnown RBP12.4□□□□□ -0.42
CLN6-217ENST00000636964 TMEM117Q9H0C3 514 aa12.4□□□□□ -0.42
CLN6-217ENST00000636964 UBE2TQ9NPD8 197 aaPredicted RBP12.4□□□□□ -0.42
CLN6-217ENST00000636964 ARHGAP28Q9P2N2 729 aa12.4□□□□□ -0.42
CLN6-217ENST00000636964 MYH10P35580 1976 aa12.4□□□□□ -0.42
CLN6-217ENST00000636964 LIG4P49917 911 aa12.4□□□□□ -0.42
CLN6-217ENST00000636964 IRX1P78414 480 aaPredicted RBP12.4□□□□□ -0.42
CLN6-217ENST00000636964 KIAA0753Q2KHM9 967 aa12.4□□□□□ -0.42
CLN6-217ENST00000636964 LMBRD2Q68DH5 695 aaPredicted RBP12.4□□□□□ -0.42
CLN6-217ENST00000636964 ZNF662Q6ZS27 426 aa12.4□□□□□ -0.42
CLN6-217ENST00000636964 ARHGEF19Q8IW93 802 aa12.4□□□□□ -0.42
CLN6-217ENST00000636964 C2orf69Q8N8R5 385 aa12.4□□□□□ -0.42
CLN6-217ENST00000636964 PTPN18Q99952 460 aa12.4□□□□□ -0.42
CLN6-217ENST00000636964 TSGA10Q9BZW7 698 aa12.4□□□□□ -0.42
CLN6-217ENST00000636964 APEX2Q9UBZ4 518 aa12.4□□□□□ -0.42
CLN6-217ENST00000636964 CEP350Q5VT06 3117 aa12.4□□□□□ -0.42
CLN6-217ENST00000636964 ANKRD33BA6NCL7 494 aa12.4□□□□□ -0.42
CLN6-217ENST00000636964 K7ERI5 159 aa12.4□□□□□ -0.42
CLN6-217ENST00000636964 ZNF185O15231 689 aa12.4□□□□□ -0.42
CLN6-217ENST00000636964 EVI5O60447 810 aa12.4□□□□□ -0.42
CLN6-217ENST00000636964 COPB2P35606 906 aa12.4□□□□□ -0.42
CLN6-217ENST00000636964 BCAS4Q8TDM0 211 aa12.4□□□□□ -0.42
CLN6-217ENST00000636964 KAT5Q92993 513 aa12.4□□□□□ -0.42
CLN6-217ENST00000636964 F8VZ95 297 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 FOXN3O00409 490 aaPredicted RBP12.39□□□□□ -0.43
CLN6-217ENST00000636964 SRGAP2CP0DJJ0 459 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 KLRC1P26715 233 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 STAT1P42224 750 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 ACOT2P49753 483 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 MXI1P50539 228 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 TARBP2Q15633 366 aaKnown RBP12.39□□□□□ -0.43
CLN6-217ENST00000636964 SEZ6Q53EL9 994 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 CCDC62Q6P9F0 684 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 TRAPPC11Q7Z392 1133 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 PARD3BQ8TEW8 1205 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 TARS2Q9BW92 718 aaKnown RBP12.39□□□□□ -0.43
CLN6-217ENST00000636964 TMCO5BA8MYB1 307 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 RBAK-RBAKDNI3L0D1 243 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 EIF3HO15372 352 aaKnown RBP eCLIP12.39□□□□□ -0.43
CLN6-217ENST00000636964 EDN1P05305 212 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 GJB1P08034 283 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 HARSP12081 509 aaKnown RBP12.39□□□□□ -0.43
CLN6-217ENST00000636964 SOX5P35711 763 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 ARL2P36404 184 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 USP8P40818 1118 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 MATR3P43243 847 aaKnown RBP eCLIP12.39□□□□□ -0.43
CLN6-217ENST00000636964 RTP1P59025 263 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 CCNA1P78396 465 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 STRN3Q13033 797 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 PRPF31Q8WWY3 499 aaKnown RBP12.39□□□□□ -0.43
CLN6-217ENST00000636964 STK33Q9BYT3 514 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 GPR88Q9GZN0 384 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 NMRK2Q9NPI5 230 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 ANKFY1Q9P2R3 1169 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 IVNS1ABPQ9Y6Y0 642 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 NCK2O43639 380 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 TACC1O75410 805 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 FAM163BP0C2L3 166 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 DNA2P51530 1060 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 BRDTQ58F21 947 aaPredicted RBP12.39□□□□□ -0.43
CLN6-217ENST00000636964 SEMA4DQ92854 862 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 HVCN1Q96D96 273 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 SH3GL2Q99962 352 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 SELENOOQ9BVL4 669 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 CHCHD3Q9NX63 227 aaKnown RBP12.39□□□□□ -0.43
CLN6-217ENST00000636964 FBXL5Q9UKA1 691 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 TRPC6Q9Y210 931 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 SAR1BQ9Y6B6 198 aa12.39□□□□□ -0.43
CLN6-217ENST00000636964 CAPN7Q9Y6W3 813 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms