RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 EPHB4P54760 987 aa6.33□□□□□ -1.4
SCN1A-212ENST00000636194 NLRP12P59046 1061 aa6.33□□□□□ -1.4
SCN1A-212ENST00000636194 ADCY1Q08828 1119 aa6.33□□□□□ -1.4
SCN1A-212ENST00000636194 MORC3Q14149 939 aa6.33□□□□□ -1.4
SCN1A-212ENST00000636194 CYP4F22Q6NT55 531 aa6.33□□□□□ -1.4
SCN1A-212ENST00000636194 SARM1Q6SZW1 724 aa6.33□□□□□ -1.4
SCN1A-212ENST00000636194 CAMKK2Q96RR4 588 aa6.33□□□□□ -1.4
SCN1A-212ENST00000636194 CYTH2Q99418 400 aa6.33□□□□□ -1.4
SCN1A-212ENST00000636194 WDR11Q9BZH6 1224 aa6.33□□□□□ -1.4
SCN1A-212ENST00000636194 TRIT1Q9H3H1 467 aaKnown RBP6.33□□□□□ -1.4
SCN1A-212ENST00000636194 CHPF2Q9P2E5 772 aa6.33□□□□□ -1.4
SCN1A-212ENST00000636194 AFF4Q9UHB7 1163 aaKnown RBP6.33□□□□□ -1.4
SCN1A-212ENST00000636194 S100A6P06703 90 aa6.33□□□□□ -1.4
SCN1A-212ENST00000636194 FOSL1P15407 271 aa6.33□□□□□ -1.4
SCN1A-212ENST00000636194 CHRNA3P32297 505 aa6.33□□□□□ -1.4
SCN1A-212ENST00000636194 SNX17Q15036 470 aa6.33□□□□□ -1.4
SCN1A-212ENST00000636194 DGKHQ86XP1 1220 aa6.33□□□□□ -1.4
SCN1A-212ENST00000636194 IQCF2Q8IXL9 164 aa6.33□□□□□ -1.4
SCN1A-212ENST00000636194 FAF2Q96CS3 445 aa6.33□□□□□ -1.4
SCN1A-212ENST00000636194 TMEM237Q96Q45 408 aa6.33□□□□□ -1.4
SCN1A-212ENST00000636194 CCDC3Q9BQI4 270 aa6.33□□□□□ -1.4
SCN1A-212ENST00000636194 CNPY3Q9BT09 278 aa6.33□□□□□ -1.4
SCN1A-212ENST00000636194 USP44Q9H0E7 712 aa6.33□□□□□ -1.4
SCN1A-212ENST00000636194 TRPC7Q9HCX4 862 aa6.33□□□□□ -1.4
SCN1A-212ENST00000636194 DIS3Q9Y2L1 958 aaKnown RBP6.33□□□□□ -1.4
SCN1A-212ENST00000636194 CACNA1CQ13936 2221 aa6.33□□□□□ -1.4
SCN1A-212ENST00000636194 MAFKO60675 156 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 OR52Z1P0C646 297 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 CREB3L3Q68CJ9 461 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 UGT3A1Q6NUS8 523 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 DYMQ7RTS9 669 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 FBXO11Q86XK2 927 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 MSL3Q8N5Y2 521 aaKnown RBP6.32□□□□□ -1.4
SCN1A-212ENST00000636194 DNAJC1Q96KC8 554 aaKnown RBP6.32□□□□□ -1.4
SCN1A-212ENST00000636194 FAM167AQ96KS9 214 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 FAM227BQ96M60 508 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 MNTQ99583 582 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 SMAD5Q99717 465 aaKnown RBP6.32□□□□□ -1.4
SCN1A-212ENST00000636194 NLRC4Q9NPP4 1024 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 SIK3Q9Y2K2 1263 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 KIAA1107Q9UPP5 1409 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 PARD3Q8TEW0 1356 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 PSMD3O43242 534 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 PSAPP07602 524 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 ALDH6A1Q02252 535 aaKnown RBP6.32□□□□□ -1.4
SCN1A-212ENST00000636194 MESDQ14696 234 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 MFSD14CQ5VZR4 134 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 XAGE3Q8WTP9 111 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 AAASQ9NRG9 546 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.32□□□□□ -1.4
SCN1A-212ENST00000636194 F6X3S4 739 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 ALBP02768 609 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 RCVRNP35243 200 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 GUCY2DQ02846 1103 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 ADAM9Q13443 819 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 ARHGAP15Q53QZ3 475 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 TWF2Q6IBS0 349 aaKnown RBP6.32□□□□□ -1.4
SCN1A-212ENST00000636194 VN1R5Q7Z5H4 357 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 RASSF3Q86WH2 238 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 SYTL1Q8IYJ3 562 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 UCMAQ8WVF2 138 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 TRIM51Q9BSJ1 452 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 ESYT1Q9BSJ8 1104 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 RACGAP1Q9H0H5 632 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 ASNSD1Q9NWL6 643 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 CUL7Q14999 1698 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 CCDC162PA2VCL2 907 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 ENO2P09104 434 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-212ENST00000636194 HIRAP54198 1017 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-212ENST00000636194 NLRP11P59045 1033 aaKnown RBP6.32□□□□□ -1.4
SCN1A-212ENST00000636194 CYP24A1Q07973 514 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 MFSD14BQ5SR56 506 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 MACC1Q6ZN28 852 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 AK8Q96MA6 479 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 SLC9A7Q96T83 725 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 INPP5FQ9Y2H2 1132 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 TRIP11Q15643 1979 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 WASLO00401 505 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-212ENST00000636194 P4HA2O15460 535 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 NR1D1P20393 614 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 YWHABP31946 246 aaKnown RBP6.32□□□□□ -1.4
SCN1A-212ENST00000636194 CBX5P45973 191 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 DYNLT1P63172 113 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 ORC2Q13416 577 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-212ENST00000636194 SGSM1Q2NKQ1 1148 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 CCDC144BQ3MJ40 725 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 UXS1Q8NBZ7 420 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 FAR1Q8WVX9 515 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 UBXN6Q9BZV1 441 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 COPS7BQ9H9Q2 264 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-212ENST00000636194 HPS4Q9NQG7 708 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 NFE2L3Q9Y4A8 694 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 NCOA1Q15788 1441 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 PIPSLA2A3N6 862 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 PPP2R1BP30154 601 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 CLCN1P35523 988 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 PHKA2P46019 1235 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 POU5F1BQ06416 359 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 OR6P1Q8NGX9 317 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 FAM162AQ96A26 154 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms