RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 MSTO1Q9BUK6 570 aa15.38■□□□□ 0.05
CLN3-242ENST00000635958 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.38■□□□□ 0.05
CLN3-242ENST00000635958 SQORQ9Y6N5 450 aa15.38■□□□□ 0.05
CLN3-242ENST00000635958 GOLGA8IPA6NC78 632 aa15.37■□□□□ 0.05
CLN3-242ENST00000635958 ZNF233A6NK53 670 aa15.37■□□□□ 0.05
CLN3-242ENST00000635958 GOLGA8JA6NMD2 632 aa15.37■□□□□ 0.05
CLN3-242ENST00000635958 OGTO15294 1046 aa15.37■□□□□ 0.05
CLN3-242ENST00000635958 ZSCAN12O43309 604 aa15.37■□□□□ 0.05
CLN3-242ENST00000635958 POU5F1Q01860 360 aaKnown RBP15.37■□□□□ 0.05
CLN3-242ENST00000635958 BFSP1Q12934 665 aa15.37■□□□□ 0.05
CLN3-242ENST00000635958 EEF1DP3Q658K8 133 aa15.37■□□□□ 0.05
CLN3-242ENST00000635958 SLC39A5Q6ZMH5 540 aa15.37■□□□□ 0.05
CLN3-242ENST00000635958 CATSPER4Q7RTX7 472 aa15.37■□□□□ 0.05
CLN3-242ENST00000635958 ANKRD33Q7Z3H0 272 aa15.37■□□□□ 0.05
CLN3-242ENST00000635958 TMC6Q7Z403 805 aa15.37■□□□□ 0.05
CLN3-242ENST00000635958 CBWD2Q8IUF1 395 aa15.37■□□□□ 0.05
CLN3-242ENST00000635958 RDH13Q8NBN7 331 aa15.37■□□□□ 0.05
CLN3-242ENST00000635958 TMC2Q8TDI7 906 aa15.37■□□□□ 0.05
CLN3-242ENST00000635958 SLC35C1Q96A29 364 aa15.37■□□□□ 0.05
CLN3-242ENST00000635958 SAAL1Q96ER3 474 aa15.37■□□□□ 0.05
CLN3-242ENST00000635958 TCHPQ9BT92 498 aa15.37■□□□□ 0.05
CLN3-242ENST00000635958 PDZD7Q9H5P4 517 aa15.37■□□□□ 0.05
CLN3-242ENST00000635958 FAM53CQ9NYF3 392 aa15.37■□□□□ 0.05
CLN3-242ENST00000635958 ANKFY1Q9P2R3 1169 aa15.37■□□□□ 0.05
CLN3-242ENST00000635958 A0A1W2PQC6 194 aa15.36■□□□□ 0.05
CLN3-242ENST00000635958 ADRB2P07550 413 aa15.36■□□□□ 0.05
CLN3-242ENST00000635958 MCF2P10911 925 aa15.36■□□□□ 0.05
CLN3-242ENST00000635958 VSTM4Q8IW00 320 aa15.36■□□□□ 0.05
CLN3-242ENST00000635958 FAM213AQ9BRX8 229 aa15.36■□□□□ 0.05
CLN3-242ENST00000635958 CDT1Q9H211 546 aa15.36■□□□□ 0.05
CLN3-242ENST00000635958 AGPAT5Q9NUQ2 364 aa15.36■□□□□ 0.05
CLN3-242ENST00000635958 NOC2LQ9Y3T9 749 aaKnown RBP15.36■□□□□ 0.05
CLN3-242ENST00000635958 MROH7Q68CQ1 1323 aa15.36■□□□□ 0.05
CLN3-242ENST00000635958 ATP8B1O43520 1251 aa15.36■□□□□ 0.05
CLN3-242ENST00000635958 CKBP12277 381 aa15.36■□□□□ 0.05
CLN3-242ENST00000635958 KRT13P13646 458 aa15.36■□□□□ 0.05
CLN3-242ENST00000635958 FGFR4P22455 802 aa15.36■□□□□ 0.05
CLN3-242ENST00000635958 UBXN1Q04323 297 aa15.36■□□□□ 0.05
CLN3-242ENST00000635958 CYP24A1Q07973 514 aa15.36■□□□□ 0.05
CLN3-242ENST00000635958 KCNH2Q12809 1159 aa15.36■□□□□ 0.05
CLN3-242ENST00000635958 BMS1Q14692 1282 aaKnown RBP15.36■□□□□ 0.05
CLN3-242ENST00000635958 ZNF568Q3ZCX4 644 aa15.36■□□□□ 0.05
CLN3-242ENST00000635958 TRAF7Q6Q0C0 670 aa15.36■□□□□ 0.05
CLN3-242ENST00000635958 FAM228AQ86W67 206 aa15.36■□□□□ 0.05
CLN3-242ENST00000635958 CAGE1Q8TC20 777 aa15.36■□□□□ 0.05
CLN3-242ENST00000635958 PARD3BQ8TEW8 1205 aa15.36■□□□□ 0.05
CLN3-242ENST00000635958 PPP1R13BQ96KQ4 1090 aa15.36■□□□□ 0.05
CLN3-242ENST00000635958 TOX2Q96NM4 488 aa15.36■□□□□ 0.05
CLN3-242ENST00000635958 ERGIC2Q96RQ1 377 aa15.36■□□□□ 0.05
CLN3-242ENST00000635958 TMEM106CQ9BVX2 250 aa15.36■□□□□ 0.05
CLN3-242ENST00000635958 AFPP02771 609 aaKnown RBP15.35■□□□□ 0.05
CLN3-242ENST00000635958 MATR3P43243 847 aaKnown RBP eCLIP15.35■□□□□ 0.05
CLN3-242ENST00000635958 VAMP7P51809 220 aa15.35■□□□□ 0.05
CLN3-242ENST00000635958 CLDN10P78369 228 aa15.35■□□□□ 0.05
CLN3-242ENST00000635958 KYAT1Q16773 422 aa15.35■□□□□ 0.05
CLN3-242ENST00000635958 FBXO47Q5MNV8 452 aa15.35■□□□□ 0.05
CLN3-242ENST00000635958 C1orf220Q5T0J3 134 aa15.35■□□□□ 0.05
CLN3-242ENST00000635958 ZNF618Q5T7W0 954 aa15.35■□□□□ 0.05
CLN3-242ENST00000635958 NOTUMQ6P988 496 aa15.35■□□□□ 0.05
CLN3-242ENST00000635958 ZBTB33Q86T24 672 aa15.35■□□□□ 0.05
CLN3-242ENST00000635958 USP38Q8NB14 1042 aa15.35■□□□□ 0.05
CLN3-242ENST00000635958 PLEKHO2Q8TD55 490 aa15.35■□□□□ 0.05
CLN3-242ENST00000635958 CCDC51Q96ER9 411 aa15.35■□□□□ 0.05
CLN3-242ENST00000635958 CPB2Q96IY4 423 aa15.35■□□□□ 0.05
CLN3-242ENST00000635958 ARGLU1Q9NWB6 273 aaPredicted RBP15.35■□□□□ 0.05
CLN3-242ENST00000635958 CPSF3Q9UKF6 684 aaKnown RBP15.35■□□□□ 0.05
CLN3-242ENST00000635958 PMM2O15305 246 aa15.34■□□□□ 0.05
CLN3-242ENST00000635958 RPS6KA5O75582 802 aa15.34■□□□□ 0.05
CLN3-242ENST00000635958 CTSHP09668 335 aa15.34■□□□□ 0.05
CLN3-242ENST00000635958 ACOT2P49753 483 aa15.34■□□□□ 0.05
CLN3-242ENST00000635958 ETF1P62495 437 aaKnown RBP15.34■□□□□ 0.05
CLN3-242ENST00000635958 PSMD6Q15008 389 aa15.34■□□□□ 0.05
CLN3-242ENST00000635958 TMEM132AQ24JP5 1023 aa15.34■□□□□ 0.05
CLN3-242ENST00000635958 ZBTB41Q5SVQ8 909 aa15.34■□□□□ 0.05
CLN3-242ENST00000635958 FKBP15Q5T1M5 1219 aa15.34■□□□□ 0.05
CLN3-242ENST00000635958 E4F1Q66K89 784 aaPredicted RBP15.34■□□□□ 0.05
CLN3-242ENST00000635958 SPECC1LQ69YQ0 1117 aa15.34■□□□□ 0.05
CLN3-242ENST00000635958 SLC27A1Q6PCB7 646 aa15.34■□□□□ 0.05
CLN3-242ENST00000635958 USP37Q86T82 979 aa15.34■□□□□ 0.05
CLN3-242ENST00000635958 ARID3AQ99856 593 aa15.34■□□□□ 0.05
CLN3-242ENST00000635958 TMX1Q9H3N1 280 aa15.34■□□□□ 0.05
CLN3-242ENST00000635958 CHST12Q9NRB3 414 aa15.34■□□□□ 0.05
CLN3-242ENST00000635958 ITIH6Q6UXX5 1313 aa15.34■□□□□ 0.05
CLN3-242ENST00000635958 SPDYE4A6NLX3 237 aa15.33■□□□□ 0.05
CLN3-242ENST00000635958 USP27XA6NNY8 438 aa15.33■□□□□ 0.05
CLN3-242ENST00000635958 GPR182O15218 404 aa15.33■□□□□ 0.05
CLN3-242ENST00000635958 ARID5BQ14865 1188 aa15.33■□□□□ 0.05
CLN3-242ENST00000635958 DCAF4L1Q3SXM0 396 aa15.33■□□□□ 0.05
CLN3-242ENST00000635958 APBB1IPQ7Z5R6 666 aaPredicted RBP15.33■□□□□ 0.05
CLN3-242ENST00000635958 CDR2LQ86X02 465 aaPredicted RBP15.33■□□□□ 0.05
CLN3-242ENST00000635958 BRSK2Q8IWQ3 736 aa15.33■□□□□ 0.05
CLN3-242ENST00000635958 CCDC155Q8N6L0 562 aa15.33■□□□□ 0.05
CLN3-242ENST00000635958 DIS3LQ8TF46 1054 aaKnown RBP15.33■□□□□ 0.05
CLN3-242ENST00000635958 ADPGKQ9BRR6 497 aa15.33■□□□□ 0.05
CLN3-242ENST00000635958 TRMT1Q9NXH9 659 aaKnown RBP15.33■□□□□ 0.05
CLN3-242ENST00000635958 ST3GAL5Q9UNP4 418 aa15.33■□□□□ 0.05
CLN3-242ENST00000635958 GTPBP10A4D1E9 387 aaKnown RBP15.33■□□□□ 0.04
CLN3-242ENST00000635958 PES1O00541 588 aaKnown RBP15.33■□□□□ 0.04
CLN3-242ENST00000635958 TLR3O15455 904 aaKnown RBP15.33■□□□□ 0.04
CLN3-242ENST00000635958 CLTAP09496 248 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms