RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 LRRC26Q2I0M4 334 aa5.66□□□□□ -1.5
LINC00540-201ENST00000611481 PRSS53Q2L4Q9 553 aa5.66□□□□□ -1.5
LINC00540-201ENST00000611481 C17orf99Q6UX52 265 aa5.66□□□□□ -1.5
LINC00540-201ENST00000611481 DDX46Q7L014 1031 aaKnown RBP5.66□□□□□ -1.5
LINC00540-201ENST00000611481 ANAPC16Q96DE5 110 aa5.66□□□□□ -1.5
LINC00540-201ENST00000611481 ZNF503Q96F45 646 aa5.66□□□□□ -1.5
LINC00540-201ENST00000611481 POLR3GLQ9BT43 218 aa5.66□□□□□ -1.5
LINC00540-201ENST00000611481 DEFB129Q9H1M3 183 aa5.66□□□□□ -1.5
LINC00540-201ENST00000611481 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.66□□□□□ -1.5
LINC00540-201ENST00000611481 CFAP54Q96N23 3096 aa5.66□□□□□ -1.5
LINC00540-201ENST00000611481 MYO9BQ13459 2157 aa5.66□□□□□ -1.5
LINC00540-201ENST00000611481 IBTKQ9P2D0 1353 aaPredicted RBP5.66□□□□□ -1.5
LINC00540-201ENST00000611481 PI4K2BG5E9Z4 385 aa5.65□□□□□ -1.5
LINC00540-201ENST00000611481 KCNQ3O43525 872 aa5.65□□□□□ -1.5
LINC00540-201ENST00000611481 ZNF202O95125 648 aa5.65□□□□□ -1.5
LINC00540-201ENST00000611481 CSF2RBP32927 897 aa5.65□□□□□ -1.5
LINC00540-201ENST00000611481 FLT3LGP49771 235 aa5.65□□□□□ -1.5
LINC00540-201ENST00000611481 GFRA1P56159 465 aa5.65□□□□□ -1.5
LINC00540-201ENST00000611481 SF1Q15637 639 aaKnown RBP5.65□□□□□ -1.5
LINC00540-201ENST00000611481 SMN1Q16637 294 aaKnown RBP5.65□□□□□ -1.5
LINC00540-201ENST00000611481 AAK1Q2M2I8 961 aa5.65□□□□□ -1.5
LINC00540-201ENST00000611481 NAALADL2Q58DX5 795 aa5.65□□□□□ -1.5
LINC00540-201ENST00000611481 PHF19Q5T6S3 580 aa5.65□□□□□ -1.5
LINC00540-201ENST00000611481 DENND5AQ6IQ26 1287 aa5.65□□□□□ -1.5
LINC00540-201ENST00000611481 REXO1L1PQ8IX06 675 aa5.65□□□□□ -1.5
LINC00540-201ENST00000611481 NGEFQ8N5V2 710 aa5.65□□□□□ -1.5
LINC00540-201ENST00000611481 TBC1D16Q8TBP0 767 aa5.65□□□□□ -1.5
LINC00540-201ENST00000611481 EDAQ92838 391 aa5.65□□□□□ -1.5
LINC00540-201ENST00000611481 CARD11Q9BXL7 1154 aa5.65□□□□□ -1.5
LINC00540-201ENST00000611481 KCNH6Q9H252 994 aa5.65□□□□□ -1.5
LINC00540-201ENST00000611481 PRDM12Q9H4Q4 367 aa5.65□□□□□ -1.5
LINC00540-201ENST00000611481 SLC6A20Q9NP91 592 aa5.65□□□□□ -1.5
LINC00540-201ENST00000611481 PTPRZ1P23471 2315 aaPredicted RBP5.64□□□□□ -1.51
LINC00540-201ENST00000611481 RECKO95980 971 aa5.64□□□□□ -1.51
LINC00540-201ENST00000611481 CKMP06732 381 aa5.64□□□□□ -1.51
LINC00540-201ENST00000611481 U2AF1L5P0DN76 240 aaPredicted RBP5.64□□□□□ -1.51
LINC00540-201ENST00000611481 CETPP11597 493 aa5.64□□□□□ -1.51
LINC00540-201ENST00000611481 COMTP21964 271 aa5.64□□□□□ -1.51
LINC00540-201ENST00000611481 U2AF1Q01081 240 aaKnown RBP eCLIP5.64□□□□□ -1.51
LINC00540-201ENST00000611481 TEFQ10587 303 aa5.64□□□□□ -1.51
LINC00540-201ENST00000611481 SKIDA1Q1XH10 827 aa5.64□□□□□ -1.51
LINC00540-201ENST00000611481 ZNF568Q3ZCX4 644 aa5.64□□□□□ -1.51
LINC00540-201ENST00000611481 SUPT20HL1Q3ZLR7 823 aa5.64□□□□□ -1.51
LINC00540-201ENST00000611481 USP39Q53GS9 565 aaKnown RBP5.64□□□□□ -1.51
LINC00540-201ENST00000611481 GPR155Q7Z3F1 870 aa5.64□□□□□ -1.51
LINC00540-201ENST00000611481 TAX1BP1Q86VP1 789 aa5.64□□□□□ -1.51
LINC00540-201ENST00000611481 TMEM145Q8NBT3 493 aa5.64□□□□□ -1.51
LINC00540-201ENST00000611481 CHFRQ96EP1 664 aa5.64□□□□□ -1.51
LINC00540-201ENST00000611481 MXD3Q9BW11 206 aa5.64□□□□□ -1.51
LINC00540-201ENST00000611481 CSRNP2Q9H175 543 aa5.64□□□□□ -1.51
LINC00540-201ENST00000611481 CDIP1Q9H305 208 aa5.64□□□□□ -1.51
LINC00540-201ENST00000611481 ZFP69BQ9UJL9 534 aa5.64□□□□□ -1.51
LINC00540-201ENST00000611481 NPFFR2Q9Y5X5 522 aa5.64□□□□□ -1.51
LINC00540-201ENST00000611481 COL1A1P02452 1464 aaPredicted RBP5.64□□□□□ -1.51
LINC00540-201ENST00000611481 COL3A1P02461 1466 aaPredicted RBP5.64□□□□□ -1.51
LINC00540-201ENST00000611481 LRRC37AA6NMS7 1700 aa5.63□□□□□ -1.51
LINC00540-201ENST00000611481 TPRP12270 2363 aaKnown RBP5.63□□□□□ -1.51
LINC00540-201ENST00000611481 SLC27A2O14975 620 aa5.63□□□□□ -1.51
LINC00540-201ENST00000611481 GRIN1Q05586 938 aa5.63□□□□□ -1.51
LINC00540-201ENST00000611481 USP10Q14694 798 aaKnown RBP5.63□□□□□ -1.51
LINC00540-201ENST00000611481 SLC10A5Q5PT55 438 aa5.63□□□□□ -1.51
LINC00540-201ENST00000611481 AGBL4Q5VU57 503 aa5.63□□□□□ -1.51
LINC00540-201ENST00000611481 C6orf15Q6UXA7 325 aaPredicted RBP5.63□□□□□ -1.51
LINC00540-201ENST00000611481 PPP1R42Q7Z4L9 355 aa5.63□□□□□ -1.51
LINC00540-201ENST00000611481 FAM178BQ8IXR5 827 aa5.63□□□□□ -1.51
LINC00540-201ENST00000611481 AMER2Q8N7J2 671 aa5.63□□□□□ -1.51
LINC00540-201ENST00000611481 PIP4K2CQ8TBX8 421 aa5.63□□□□□ -1.51
LINC00540-201ENST00000611481 CLEC4DQ8WXI8 215 aa5.63□□□□□ -1.51
LINC00540-201ENST00000611481 TIFAQ96CG3 184 aa5.63□□□□□ -1.51
LINC00540-201ENST00000611481 NEIL1Q96FI4 390 aaPredicted RBP5.63□□□□□ -1.51
LINC00540-201ENST00000611481 C1orf159Q96HA4 380 aa5.63□□□□□ -1.51
LINC00540-201ENST00000611481 KATNBL1Q9H079 304 aa5.63□□□□□ -1.51
LINC00540-201ENST00000611481 ZCCHC17Q9NP64 241 aaKnown RBP5.63□□□□□ -1.51
LINC00540-201ENST00000611481 KCND1Q9NSA2 647 aa5.63□□□□□ -1.51
LINC00540-201ENST00000611481 ARHGAP20Q9P2F6 1191 aa5.63□□□□□ -1.51
LINC00540-201ENST00000611481 LAMB2P55268 1798 aa5.62□□□□□ -1.51
LINC00540-201ENST00000611481 KMT2BQ9UMN6 2715 aaPredicted RBP5.62□□□□□ -1.51
LINC00540-201ENST00000611481 NUP98P52948 1817 aa5.62□□□□□ -1.51
LINC00540-201ENST00000611481 OTOFQ9HC10 1997 aa5.62□□□□□ -1.51
LINC00540-201ENST00000611481 ZFHX4Q86UP3 3567 aa5.62□□□□□ -1.51
LINC00540-201ENST00000611481 ERVV-1B6SEH8 477 aa5.62□□□□□ -1.51
LINC00540-201ENST00000611481 SUSD5O60279 629 aa5.62□□□□□ -1.51
LINC00540-201ENST00000611481 UFL1O94874 794 aa5.62□□□□□ -1.51
LINC00540-201ENST00000611481 FAHP16930 419 aa5.62□□□□□ -1.51
LINC00540-201ENST00000611481 MCM7P33993 719 aa5.62□□□□□ -1.51
LINC00540-201ENST00000611481 GLRBP48167 497 aa5.62□□□□□ -1.51
LINC00540-201ENST00000611481 RAC3P60763 192 aa5.62□□□□□ -1.51
LINC00540-201ENST00000611481 PTH1RQ03431 593 aa5.62□□□□□ -1.51
LINC00540-201ENST00000611481 DPTQ07507 201 aa5.62□□□□□ -1.51
LINC00540-201ENST00000611481 MTHFSDQ2M296 383 aaKnown RBP5.62□□□□□ -1.51
LINC00540-201ENST00000611481 SLC35F1Q5T1Q4 408 aa5.62□□□□□ -1.51
LINC00540-201ENST00000611481 IGFL4Q6B9Z1 124 aa5.62□□□□□ -1.51
LINC00540-201ENST00000611481 KIF6Q6ZMV9 814 aa5.62□□□□□ -1.51
LINC00540-201ENST00000611481 NT5DC4Q86YG4 428 aa5.62□□□□□ -1.51
LINC00540-201ENST00000611481 ZNF34Q8IZ26 560 aa5.62□□□□□ -1.51
LINC00540-201ENST00000611481 STPG3Q8N7X2 389 aa5.62□□□□□ -1.51
LINC00540-201ENST00000611481 ANKS1AQ92625 1134 aa5.62□□□□□ -1.51
LINC00540-201ENST00000611481 CELF1Q92879 486 aaKnown RBP5.62□□□□□ -1.51
LINC00540-201ENST00000611481 EXTL1Q92935 676 aa5.62□□□□□ -1.51
LINC00540-201ENST00000611481 RNPC3Q96LT9 517 aaKnown RBP5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms