RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 TUSC3Q13454 348 aa8.41□□□□□ -1.06
CUX1-219ENST00000606749 HSP90AA2PQ14568 343 aaPredicted RBP8.41□□□□□ -1.06
CUX1-219ENST00000606749 PPP2R5AQ15172 486 aa8.41□□□□□ -1.06
CUX1-219ENST00000606749 IL17AQ16552 155 aa8.41□□□□□ -1.06
CUX1-219ENST00000606749 NT5DC1Q5TFE4 455 aa8.41□□□□□ -1.06
CUX1-219ENST00000606749 HAUS3Q68CZ6 603 aa8.41□□□□□ -1.06
CUX1-219ENST00000606749 LILRA6Q6PI73 481 aa8.41□□□□□ -1.06
CUX1-219ENST00000606749 CYP26C1Q6V0L0 522 aa8.41□□□□□ -1.06
CUX1-219ENST00000606749 SPATA31D4Q6ZUB0 917 aa8.41□□□□□ -1.06
CUX1-219ENST00000606749 CCDC149Q6ZUS6 474 aa8.41□□□□□ -1.06
CUX1-219ENST00000606749 OTOP3Q7RTS5 596 aa8.41□□□□□ -1.06
CUX1-219ENST00000606749 PALB2Q86YC2 1186 aa8.41□□□□□ -1.06
CUX1-219ENST00000606749 HDAC7Q8WUI4 952 aa8.41□□□□□ -1.06
CUX1-219ENST00000606749 RIN2Q8WYP3 895 aaPredicted RBP8.41□□□□□ -1.06
CUX1-219ENST00000606749 ACSF2Q96CM8 615 aaPredicted RBP8.41□□□□□ -1.06
CUX1-219ENST00000606749 IFT74Q96LB3 600 aa8.41□□□□□ -1.06
CUX1-219ENST00000606749 PHOX2BQ99453 314 aa8.41□□□□□ -1.06
CUX1-219ENST00000606749 PAAF1Q9BRP4 392 aa8.41□□□□□ -1.06
CUX1-219ENST00000606749 ADPGKQ9BRR6 497 aa8.41□□□□□ -1.06
CUX1-219ENST00000606749 RHOBTB2Q9BYZ6 727 aa8.41□□□□□ -1.06
CUX1-219ENST00000606749 CXCL16Q9H2A7 254 aa8.41□□□□□ -1.06
CUX1-219ENST00000606749 BHMT2Q9H2M3 363 aa8.41□□□□□ -1.06
CUX1-219ENST00000606749 PLEKHA4Q9H4M7 779 aa8.41□□□□□ -1.06
CUX1-219ENST00000606749 WDR6Q9NNW5 1121 aaKnown RBP8.41□□□□□ -1.06
CUX1-219ENST00000606749 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.41□□□□□ -1.06
CUX1-219ENST00000606749 DDX19AQ9NUU7 478 aaKnown RBP8.41□□□□□ -1.06
CUX1-219ENST00000606749 SNTG2Q9NY99 539 aa8.41□□□□□ -1.06
CUX1-219ENST00000606749 FNIP2Q9P278 1114 aa8.41□□□□□ -1.06
CUX1-219ENST00000606749 LRWD1Q9UFC0 647 aa8.41□□□□□ -1.06
CUX1-219ENST00000606749 DPP7Q9UHL4 492 aa8.41□□□□□ -1.06
CUX1-219ENST00000606749 NOL7Q9UMY1 257 aaKnown RBP8.41□□□□□ -1.06
CUX1-219ENST00000606749 KIAA1024Q9UPX6 916 aa8.41□□□□□ -1.06
CUX1-219ENST00000606749 PCDHB6Q9Y5E3 794 aa8.41□□□□□ -1.06
CUX1-219ENST00000606749 CASTOR2A6NHX0 329 aa8.4□□□□□ -1.06
CUX1-219ENST00000606749 K7ERI5 159 aa8.4□□□□□ -1.06
CUX1-219ENST00000606749 TGM5O43548 720 aa8.4□□□□□ -1.06
CUX1-219ENST00000606749 N4BP1O75113 896 aaKnown RBP8.4□□□□□ -1.06
CUX1-219ENST00000606749 RFPL2O75678 378 aa8.4□□□□□ -1.06
CUX1-219ENST00000606749 RECQL4O94761 1208 aa8.4□□□□□ -1.06
CUX1-219ENST00000606749 EDN1P05305 212 aa8.4□□□□□ -1.06
CUX1-219ENST00000606749 NAB2Q15742 525 aa8.4□□□□□ -1.06
CUX1-219ENST00000606749 TMEM132AQ24JP5 1023 aa8.4□□□□□ -1.06
CUX1-219ENST00000606749 EEF1DP3Q658K8 133 aa8.4□□□□□ -1.06
CUX1-219ENST00000606749 ELMSAN1Q6PJG2 1045 aa8.4□□□□□ -1.06
CUX1-219ENST00000606749 PRSS55Q6UWB4 352 aaPredicted RBP8.4□□□□□ -1.06
CUX1-219ENST00000606749 IGSF22Q8N9C0 903 aa8.4□□□□□ -1.06
CUX1-219ENST00000606749 HASPINQ8TF76 798 aa8.4□□□□□ -1.06
CUX1-219ENST00000606749 KIFAP3Q92845 792 aa8.4□□□□□ -1.06
CUX1-219ENST00000606749 ZNF707Q96C28 371 aaPredicted RBP8.4□□□□□ -1.06
CUX1-219ENST00000606749 KIFC3Q9BVG8 833 aa8.4□□□□□ -1.06
CUX1-219ENST00000606749 NT5C3AQ9H0P0 336 aa8.4□□□□□ -1.06
CUX1-219ENST00000606749 KCNK12Q9HB15 430 aa8.4□□□□□ -1.06
CUX1-219ENST00000606749 DAXXQ9UER7 740 aaPredicted RBP8.4□□□□□ -1.06
CUX1-219ENST00000606749 DNM3Q9UQ16 869 aa8.4□□□□□ -1.06
CUX1-219ENST00000606749 GDAQ9Y2T3 454 aa8.4□□□□□ -1.06
CUX1-219ENST00000606749 STK24Q9Y6E0 443 aa8.4□□□□□ -1.06
CUX1-219ENST00000606749 TDRD15B5MCY1 1934 aaKnown RBP8.4□□□□□ -1.06
CUX1-219ENST00000606749 SF3B1O75533 1304 aaKnown RBP eCLIP8.39□□□□□ -1.078e-6■■■■■ 52.6
CUX1-219ENST00000606749 CCDC169A6NNP5 214 aa8.39□□□□□ -1.07
CUX1-219ENST00000606749 PP2D1A8MPX8 630 aa8.39□□□□□ -1.07
CUX1-219ENST00000606749 E9PMD0 336 aa8.39□□□□□ -1.07
CUX1-219ENST00000606749 LAD1O00515 517 aa8.39□□□□□ -1.07
CUX1-219ENST00000606749 KIF4AO95239 1232 aa8.39□□□□□ -1.07
CUX1-219ENST00000606749 RPL17P18621 184 aaKnown RBP8.39□□□□□ -1.07
CUX1-219ENST00000606749 IGFBP6P24592 240 aaPredicted RBP8.39□□□□□ -1.07
CUX1-219ENST00000606749 CDC25AP30304 524 aa8.39□□□□□ -1.07
CUX1-219ENST00000606749 PRPHP41219 470 aa8.39□□□□□ -1.07
CUX1-219ENST00000606749 NPTX2P47972 431 aa8.39□□□□□ -1.07
CUX1-219ENST00000606749 NUBP1P53384 320 aa8.39□□□□□ -1.07
CUX1-219ENST00000606749 CREMQ03060 361 aa8.39□□□□□ -1.07
CUX1-219ENST00000606749 TDGQ13569 410 aa8.39□□□□□ -1.07
CUX1-219ENST00000606749 DCAF4L1Q3SXM0 396 aa8.39□□□□□ -1.07
CUX1-219ENST00000606749 RTP2Q5QGT7 225 aa8.39□□□□□ -1.07
CUX1-219ENST00000606749 ATF7IP2Q5U623 682 aa8.39□□□□□ -1.07
CUX1-219ENST00000606749 FAM171A1Q5VUB5 890 aa8.39□□□□□ -1.07
CUX1-219ENST00000606749 DTHD1Q6ZMT9 781 aa8.39□□□□□ -1.07
CUX1-219ENST00000606749 CEP57Q86XR8 500 aa8.39□□□□□ -1.07
CUX1-219ENST00000606749 GLYCTKQ8IVS8 523 aa8.39□□□□□ -1.07
CUX1-219ENST00000606749 LNX1Q8TBB1 728 aaPredicted RBP8.39□□□□□ -1.07
CUX1-219ENST00000606749 SNX29Q8TEQ0 813 aa8.39□□□□□ -1.07
CUX1-219ENST00000606749 SMG7Q92540 1137 aaKnown RBP8.39□□□□□ -1.07
CUX1-219ENST00000606749 CLSTN3Q9BQT9 956 aa8.39□□□□□ -1.07
CUX1-219ENST00000606749 TTPALQ9BTX7 342 aa8.39□□□□□ -1.07
CUX1-219ENST00000606749 MMTAG2Q9BU76 263 aaKnown RBP8.39□□□□□ -1.07
CUX1-219ENST00000606749 RAB34Q9BZG1 259 aa8.39□□□□□ -1.07
CUX1-219ENST00000606749 PRKD2Q9BZL6 878 aa8.39□□□□□ -1.07
CUX1-219ENST00000606749 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.39□□□□□ -1.07
CUX1-219ENST00000606749 ZDHHC7Q9NXF8 308 aa8.39□□□□□ -1.07
CUX1-219ENST00000606749 IGSF9Q9P2J2 1179 aa8.39□□□□□ -1.07
CUX1-219ENST00000606749 TNFSF13BQ9Y275 285 aa8.39□□□□□ -1.07
CUX1-219ENST00000606749 CLUHO75153 1309 aa8.38□□□□□ -1.07
CUX1-219ENST00000606749 SFI1A8K8P3 1242 aa8.38□□□□□ -1.07
CUX1-219ENST00000606749 GALR2O43603 387 aaPredicted RBP8.38□□□□□ -1.07
CUX1-219ENST00000606749 HIP1RO75146 1068 aa8.38□□□□□ -1.07
CUX1-219ENST00000606749 ZMYND10O75800 440 aa8.38□□□□□ -1.07
CUX1-219ENST00000606749 GBP2P32456 591 aaPredicted RBP8.38□□□□□ -1.07
CUX1-219ENST00000606749 CLCN5P51795 746 aa8.38□□□□□ -1.07
CUX1-219ENST00000606749 PEX3P56589 373 aa8.38□□□□□ -1.07
CUX1-219ENST00000606749 ELAVL2Q12926 359 aaKnown RBP8.38□□□□□ -1.07
CUX1-219ENST00000606749 RABEP1Q15276 862 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms