RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 AMPD3Q01432 767 aa16.66■□□□□ 0.26
LIG1-219ENST00000600055 PLCB3Q01970 1234 aa16.66■□□□□ 0.26
LIG1-219ENST00000600055 KCNA1Q09470 495 aa16.66■□□□□ 0.26
LIG1-219ENST00000600055 SKIV2LQ15477 1246 aaKnown RBP16.66■□□□□ 0.26
LIG1-219ENST00000600055 TCEAL5Q5H9L2 206 aa16.66■□□□□ 0.26
LIG1-219ENST00000600055 SLC39A4Q6P5W5 647 aa16.66■□□□□ 0.26
LIG1-219ENST00000600055 APBB1IPQ7Z5R6 666 aaPredicted RBP16.66■□□□□ 0.26
LIG1-219ENST00000600055 MAP4K3Q8IVH8 894 aa16.66■□□□□ 0.26
LIG1-219ENST00000600055 CCDC65Q8IXS2 484 aa16.66■□□□□ 0.26
LIG1-219ENST00000600055 COLGALT2Q8IYK4 626 aa16.66■□□□□ 0.26
LIG1-219ENST00000600055 CEP57L1Q8IYX8 460 aa16.66■□□□□ 0.26
LIG1-219ENST00000600055 MRPS27Q92552 414 aaKnown RBP16.66■□□□□ 0.26
LIG1-219ENST00000600055 RPS6KC1Q96S38 1066 aa16.66■□□□□ 0.26
LIG1-219ENST00000600055 STRA6Q9BX79 667 aa16.66■□□□□ 0.26
LIG1-219ENST00000600055 ST6GALNAC4Q9H4F1 302 aa16.66■□□□□ 0.26
LIG1-219ENST00000600055 MAGEF1Q9HAY2 307 aa16.66■□□□□ 0.26
LIG1-219ENST00000600055 CACNG4Q9UBN1 327 aa16.66■□□□□ 0.26
LIG1-219ENST00000600055 FAM237AA0A1B0GTK4 181 aa16.65■□□□□ 0.26
LIG1-219ENST00000600055 A0A1W2PQ27 194 aa16.65■□□□□ 0.26
LIG1-219ENST00000600055 A0A1W2PQ64 194 aa16.65■□□□□ 0.26
LIG1-219ENST00000600055 A0A1W2PQD8 194 aa16.65■□□□□ 0.26
LIG1-219ENST00000600055 ANKRD63C9JTQ0 380 aa16.65■□□□□ 0.26
LIG1-219ENST00000600055 NRP1O14786 923 aa16.65■□□□□ 0.26
LIG1-219ENST00000600055 HNRNPDLO14979 420 aaKnown RBP16.65■□□□□ 0.26
LIG1-219ENST00000600055 CLDN3O15551 220 aa16.65■□□□□ 0.26
LIG1-219ENST00000600055 MEFVO15553 781 aaPredicted RBP16.65■□□□□ 0.26
LIG1-219ENST00000600055 GCNT3O95395 438 aa16.65■□□□□ 0.26
LIG1-219ENST00000600055 PIGRP01833 764 aa16.65■□□□□ 0.26
LIG1-219ENST00000600055 SLFN14P0C7P3 912 aa16.65■□□□□ 0.26
LIG1-219ENST00000600055 MATR3P43243 847 aaKnown RBP eCLIP16.65■□□□□ 0.26
LIG1-219ENST00000600055 MCL1Q07820 350 aa16.65■□□□□ 0.26
LIG1-219ENST00000600055 DSC1Q08554 894 aa16.65■□□□□ 0.26
LIG1-219ENST00000600055 CUL4BQ13620 913 aa16.65■□□□□ 0.26
LIG1-219ENST00000600055 NOLC1Q14978 699 aaKnown RBP eCLIP16.65■□□□□ 0.26
LIG1-219ENST00000600055 SLC17A8Q8NDX2 589 aa16.65■□□□□ 0.26
LIG1-219ENST00000600055 GLIS3Q8NEA6 775 aa16.65■□□□□ 0.26
LIG1-219ENST00000600055 RABGGTAQ92696 567 aa16.65■□□□□ 0.26
LIG1-219ENST00000600055 PAGE5Q96GU1 130 aa16.65■□□□□ 0.26
LIG1-219ENST00000600055 IGSF21Q96ID5 467 aa16.65■□□□□ 0.26
LIG1-219ENST00000600055 PYM1Q9BRP8 204 aaKnown RBP16.65■□□□□ 0.26
LIG1-219ENST00000600055 NSUN3Q9H649 340 aaKnown RBP16.65■□□□□ 0.26
LIG1-219ENST00000600055 OLFML3Q9NRN5 406 aa16.65■□□□□ 0.26
LIG1-219ENST00000600055 PRG3Q9Y2Y8 225 aaPredicted RBP16.65■□□□□ 0.26
LIG1-219ENST00000600055 PRRC2BQ5JSZ5 2229 aaKnown RBP16.65■□□□□ 0.26
LIG1-219ENST00000600055 TCHHQ07283 1943 aa16.64■□□□□ 0.26
LIG1-219ENST00000600055 ZMYM2Q9UBW7 1377 aa16.64■□□□□ 0.26
LIG1-219ENST00000600055 F8W810 466 aa16.64■□□□□ 0.25
LIG1-219ENST00000600055 ALDH2P05091 517 aa16.64■□□□□ 0.25
LIG1-219ENST00000600055 SCP2P22307 547 aa16.64■□□□□ 0.25
LIG1-219ENST00000600055 SYKP43405 635 aa16.64■□□□□ 0.25
LIG1-219ENST00000600055 OR1G1P47890 313 aa16.64■□□□□ 0.25
LIG1-219ENST00000600055 KRT17Q04695 432 aa16.64■□□□□ 0.25
LIG1-219ENST00000600055 UBE3AQ05086 875 aa16.64■□□□□ 0.25
LIG1-219ENST00000600055 GRIK3Q13003 919 aa16.64■□□□□ 0.25
LIG1-219ENST00000600055 TIGD5Q53EQ6 642 aa16.64■□□□□ 0.25
LIG1-219ENST00000600055 GLRA4Q5JXX5 417 aa16.64■□□□□ 0.25
LIG1-219ENST00000600055 CNNM4Q6P4Q7 775 aa16.64■□□□□ 0.25
LIG1-219ENST00000600055 ADGRD2Q7Z7M1 963 aa16.64■□□□□ 0.25
LIG1-219ENST00000600055 MICAL1Q8TDZ2 1067 aa16.64■□□□□ 0.25
LIG1-219ENST00000600055 TMEM175Q9BSA9 504 aa16.64■□□□□ 0.25
LIG1-219ENST00000600055 CCDC94Q9BW85 323 aaPredicted RBP16.64■□□□□ 0.25
LIG1-219ENST00000600055 TLR9Q9NR96 1032 aa16.64■□□□□ 0.25
LIG1-219ENST00000600055 FAN1Q9Y2M0 1017 aa16.64■□□□□ 0.25
LIG1-219ENST00000600055 REV3LO60673 3130 aa16.63■□□□□ 0.25
LIG1-219ENST00000600055 PLXNA4Q9HCM2 1894 aa16.63■□□□□ 0.25
LIG1-219ENST00000600055 FSCN2O14926 492 aa16.63■□□□□ 0.25
LIG1-219ENST00000600055 PRPF6O94906 941 aaKnown RBP16.63■□□□□ 0.25
LIG1-219ENST00000600055 THP07101 528 aa16.63■□□□□ 0.25
LIG1-219ENST00000600055 GTF2F1P35269 517 aaKnown RBP eCLIP16.63■□□□□ 0.25
LIG1-219ENST00000600055 TNFSF9P41273 254 aa16.63■□□□□ 0.25
LIG1-219ENST00000600055 YARSP54577 528 aaKnown RBP16.63■□□□□ 0.25
LIG1-219ENST00000600055 NAB2Q15742 525 aa16.63■□□□□ 0.25
LIG1-219ENST00000600055 ZBTB41Q5SVQ8 909 aa16.63■□□□□ 0.25
LIG1-219ENST00000600055 L1TD1Q5T7N2 865 aaKnown RBP16.63■□□□□ 0.25
LIG1-219ENST00000600055 PLPP4Q5VZY2 271 aa16.63■□□□□ 0.25
LIG1-219ENST00000600055 ALKAL1Q6UXT8 129 aa16.63■□□□□ 0.25
LIG1-219ENST00000600055 UNC13DQ70J99 1090 aa16.63■□□□□ 0.25
LIG1-219ENST00000600055 TMEM169Q96HH4 297 aa16.63■□□□□ 0.25
LIG1-219ENST00000600055 ACAP3Q96P50 834 aa16.63■□□□□ 0.25
LIG1-219ENST00000600055 PAAF1Q9BRP4 392 aa16.63■□□□□ 0.25
LIG1-219ENST00000600055 VN1R3Q9BXE9 311 aa16.63■□□□□ 0.25
LIG1-219ENST00000600055 MARCH5Q9NX47 278 aa16.63■□□□□ 0.25
LIG1-219ENST00000600055 CHMP5Q9NZZ3 219 aa16.63■□□□□ 0.25
LIG1-219ENST00000600055 PUF60Q9UHX1 559 aaKnown RBP16.63■□□□□ 0.25
LIG1-219ENST00000600055 LZTS1Q9Y250 596 aa16.63■□□□□ 0.25
LIG1-219ENST00000600055 A0A0B4J269 797 aa16.62■□□□□ 0.25
LIG1-219ENST00000600055 CASTOR2A6NHX0 329 aa16.62■□□□□ 0.25
LIG1-219ENST00000600055 ABCD1P33897 745 aa16.62■□□□□ 0.25
LIG1-219ENST00000600055 HYAL1Q12794 435 aa16.62■□□□□ 0.25
LIG1-219ENST00000600055 SLC10A6Q3KNW5 377 aa16.62■□□□□ 0.25
LIG1-219ENST00000600055 XKR4Q5GH76 650 aa16.62■□□□□ 0.25
LIG1-219ENST00000600055 HVCN1Q96D96 273 aa16.62■□□□□ 0.25
LIG1-219ENST00000600055 SNX27Q96L92 541 aa16.62■□□□□ 0.25
LIG1-219ENST00000600055 ZMAT2Q96NC0 199 aaKnown RBP16.62■□□□□ 0.25
LIG1-219ENST00000600055 PPP1R10Q96QC0 940 aaKnown RBP16.62■□□□□ 0.25
LIG1-219ENST00000600055 ACCSQ96QU6 501 aa16.62■□□□□ 0.25
LIG1-219ENST00000600055 TCF25Q9BQ70 676 aa16.62■□□□□ 0.25
LIG1-219ENST00000600055 MSTO1Q9BUK6 570 aa16.62■□□□□ 0.25
LIG1-219ENST00000600055 IGFLR1Q9H665 355 aa16.62■□□□□ 0.25
LIG1-219ENST00000600055 ENTPD7Q9NQZ7 604 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms