RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 POTEMA6NI47 508 aa21.65■■□□□ 1.06
UPF1-207ENST00000599848 MTSS1O43312 755 aa21.65■■□□□ 1.06
UPF1-207ENST00000599848 NDUFA10O95299 355 aa21.65■■□□□ 1.06
UPF1-207ENST00000599848 AKT1P31749 480 aa21.65■■□□□ 1.06
UPF1-207ENST00000599848 PDCD7Q8N8D1 485 aaKnown RBP21.65■■□□□ 1.06
UPF1-207ENST00000599848 MRPS31Q92665 395 aaKnown RBP21.65■■□□□ 1.06
UPF1-207ENST00000599848 SEPT5Q99719 369 aaPredicted RBP21.65■■□□□ 1.06
UPF1-207ENST00000599848 WNT8AQ9H1J5 351 aa21.65■■□□□ 1.06
UPF1-207ENST00000599848 USP31Q70CQ4 1352 aa21.65■■□□□ 1.06
UPF1-207ENST00000599848 UBA6A0AVT1 1052 aaPredicted RBP21.65■■□□□ 1.06
UPF1-207ENST00000599848 ALS2CLQ60I27 953 aa21.65■■□□□ 1.06
UPF1-207ENST00000599848 HDAC6Q9UBN7 1215 aa21.65■■□□□ 1.06
UPF1-207ENST00000599848 VPS9D1Q9Y2B5 631 aa21.65■■□□□ 1.06
UPF1-207ENST00000599848 SEC23IPQ9Y6Y8 1000 aaKnown RBP21.65■■□□□ 1.06
UPF1-207ENST00000599848 DPEP1P16444 411 aa21.65■■□□□ 1.06
UPF1-207ENST00000599848 RGS4P49798 205 aa21.65■■□□□ 1.06
UPF1-207ENST00000599848 P3H1Q32P28 736 aa21.65■■□□□ 1.06
UPF1-207ENST00000599848 PPP1R13BQ96KQ4 1090 aa21.65■■□□□ 1.06
UPF1-207ENST00000599848 AIPL1Q9NZN9 384 aa21.65■■□□□ 1.06
UPF1-207ENST00000599848 OR1G1P47890 313 aa21.64■■□□□ 1.06
UPF1-207ENST00000599848 MTA1Q13330 715 aa21.64■■□□□ 1.06
UPF1-207ENST00000599848 RESP18Q5W5W9 173 aa21.64■■□□□ 1.06
UPF1-207ENST00000599848 FRMD5Q7Z6J6 570 aa21.64■■□□□ 1.06
UPF1-207ENST00000599848 TRIM48Q8IWZ4 208 aa21.64■■□□□ 1.06
UPF1-207ENST00000599848 MUC3BQ9H195 1237 aa21.64■■□□□ 1.06
UPF1-207ENST00000599848 NSMCE4AQ9NXX6 385 aa21.64■■□□□ 1.06
UPF1-207ENST00000599848 PSD3Q9NYI0 1048 aa21.64■■□□□ 1.06
UPF1-207ENST00000599848 ANGPTL2Q9UKU9 493 aa21.64■■□□□ 1.06
UPF1-207ENST00000599848 GOLGA8TH3BQL2 631 aa21.64■■□□□ 1.05
UPF1-207ENST00000599848 PDXKO00764 312 aa21.64■■□□□ 1.05
UPF1-207ENST00000599848 ODC1P11926 461 aa21.64■■□□□ 1.05
UPF1-207ENST00000599848 SPARCL1Q14515 664 aa21.64■■□□□ 1.05
UPF1-207ENST00000599848 MGAT5BQ3V5L5 792 aa21.64■■□□□ 1.05
UPF1-207ENST00000599848 CYFIP1Q7L576 1253 aa21.64■■□□□ 1.05
UPF1-207ENST00000599848 RIN2Q8WYP3 895 aaPredicted RBP21.64■■□□□ 1.05
UPF1-207ENST00000599848 G3BP2Q9UN86 482 aaKnown RBP21.64■■□□□ 1.05
UPF1-207ENST00000599848 APOBEC2Q9Y235 224 aaKnown RBP21.64■■□□□ 1.05
UPF1-207ENST00000599848 E9PMD0 336 aa21.64■■□□□ 1.05
UPF1-207ENST00000599848 MMS22LQ6ZRQ5 1243 aa21.64■■□□□ 1.05
UPF1-207ENST00000599848 TBC1D1Q86TI0 1168 aaPredicted RBP21.64■■□□□ 1.05
UPF1-207ENST00000599848 RIT2Q99578 217 aa21.64■■□□□ 1.05
UPF1-207ENST00000599848 YIPF2Q9BWQ6 316 aa21.64■■□□□ 1.05
UPF1-207ENST00000599848 SPACA6W5XKT8 324 aa21.64■■□□□ 1.05
UPF1-207ENST00000599848 CFAP69A5D8W1 941 aa21.64■■□□□ 1.05
UPF1-207ENST00000599848 URODP06132 367 aa21.64■■□□□ 1.05
UPF1-207ENST00000599848 VCLP18206 1134 aa21.64■■□□□ 1.05
UPF1-207ENST00000599848 SULT1E1P49888 294 aa21.64■■□□□ 1.05
UPF1-207ENST00000599848 KCNH2Q12809 1159 aa21.64■■□□□ 1.05
UPF1-207ENST00000599848 ZNF564Q8TBZ8 553 aaPredicted RBP21.64■■□□□ 1.05
UPF1-207ENST00000599848 DEFB129Q9H1M3 183 aa21.64■■□□□ 1.05
UPF1-207ENST00000599848 YY1AP1Q9H869 796 aa21.64■■□□□ 1.05
UPF1-207ENST00000599848 TMEM63CQ9P1W3 806 aa21.64■■□□□ 1.05
UPF1-207ENST00000599848 SPATA31E1Q6ZUB1 1445 aa21.64■■□□□ 1.05
UPF1-207ENST00000599848 POTECB2RU33 542 aa21.63■■□□□ 1.05
UPF1-207ENST00000599848 PSMD14O00487 310 aa21.63■■□□□ 1.05
UPF1-207ENST00000599848 E2F6O75461 281 aa21.63■■□□□ 1.05
UPF1-207ENST00000599848 GPRASP2Q96D09 838 aa21.63■■□□□ 1.05
UPF1-207ENST00000599848 ECT2Q9H8V3 914 aa21.63■■□□□ 1.05
UPF1-207ENST00000599848 SAYSD1Q9NPB0 183 aa21.63■■□□□ 1.05
UPF1-207ENST00000599848 TULP4Q9NRJ4 1543 aa21.63■■□□□ 1.05
UPF1-207ENST00000599848 FTCDO95954 541 aa21.63■■□□□ 1.05
UPF1-207ENST00000599848 BRAFP15056 766 aa21.63■■□□□ 1.05
UPF1-207ENST00000599848 ABCE1P61221 599 aaKnown RBP21.63■■□□□ 1.05
UPF1-207ENST00000599848 PLD1Q13393 1074 aa21.63■■□□□ 1.05
UPF1-207ENST00000599848 KRT80Q6KB66 452 aa21.63■■□□□ 1.05
UPF1-207ENST00000599848 ATPAF2Q8N5M1 289 aa21.63■■□□□ 1.05
UPF1-207ENST00000599848 CALML6Q8TD86 181 aa21.63■■□□□ 1.05
UPF1-207ENST00000599848 GTSE1Q9NYZ3 720 aa21.63■■□□□ 1.05
UPF1-207ENST00000599848 EIF2AK3Q9NZJ5 1116 aaKnown RBP21.63■■□□□ 1.05
UPF1-207ENST00000599848 TRIM59Q8IWR1 403 aa21.63■■□□□ 1.05
UPF1-207ENST00000599848 MTMR4Q9NYA4 1195 aa21.63■■□□□ 1.05
UPF1-207ENST00000599848 DFFAO00273 331 aa21.63■■□□□ 1.05
UPF1-207ENST00000599848 RPL10AP62906 217 aaKnown RBP21.63■■□□□ 1.05
UPF1-207ENST00000599848 MDM2Q00987 491 aaPredicted RBP21.63■■□□□ 1.05
UPF1-207ENST00000599848 ZNF543Q08ER8 600 aa21.63■■□□□ 1.05
UPF1-207ENST00000599848 SMYD4Q8IYR2 804 aaPredicted RBP21.63■■□□□ 1.05
UPF1-207ENST00000599848 NR1H4Q96RI1 486 aaPredicted RBP21.63■■□□□ 1.05
UPF1-207ENST00000599848 SUFUQ9UMX1 484 aa21.63■■□□□ 1.05
UPF1-207ENST00000599848 PPP4R4Q6NUP7 873 aa21.62■■□□□ 1.05
UPF1-207ENST00000599848 PCDHB12Q9Y5F1 795 aa21.62■■□□□ 1.05
UPF1-207ENST00000599848 CTIFO43310 598 aaKnown RBP21.62■■□□□ 1.05
UPF1-207ENST00000599848 ZNF484Q5JVG2 852 aa21.62■■□□□ 1.05
UPF1-207ENST00000599848 SLC7A14Q8TBB6 771 aa21.62■■□□□ 1.05
UPF1-207ENST00000599848 ADAMTS1Q9UHI8 967 aa21.62■■□□□ 1.05
UPF1-207ENST00000599848 LGALS16A8MUM7 142 aa21.62■■□□□ 1.05
UPF1-207ENST00000599848 NPM3O75607 178 aaKnown RBP21.62■■□□□ 1.05
UPF1-207ENST00000599848 KRT16P08779 473 aa21.62■■□□□ 1.05
UPF1-207ENST00000599848 C18orf8Q96DM3 657 aa21.62■■□□□ 1.05
UPF1-207ENST00000599848 EEF2KMTQ96G04 330 aa21.62■■□□□ 1.05
UPF1-207ENST00000599848 TMEM51Q9NW97 253 aa21.62■■□□□ 1.05
UPF1-207ENST00000599848 RGL1Q9NZL6 768 aa21.62■■□□□ 1.05
UPF1-207ENST00000599848 SNX9Q9Y5X1 595 aa21.62■■□□□ 1.05
UPF1-207ENST00000599848 DYRK3O43781 588 aa21.62■■□□□ 1.05
UPF1-207ENST00000599848 CYP2C8P10632 490 aa21.62■■□□□ 1.05
UPF1-207ENST00000599848 SLC11A2P49281 568 aa21.62■■□□□ 1.05
UPF1-207ENST00000599848 ATP6V0D2Q8N8Y2 350 aa21.62■■□□□ 1.05
UPF1-207ENST00000599848 CEP19Q96LK0 163 aa21.62■■□□□ 1.05
UPF1-207ENST00000599848 NRBP1Q9UHY1 535 aa21.62■■□□□ 1.05
UPF1-207ENST00000599848 UBQLN1Q9UMX0 589 aaKnown RBP21.62■■□□□ 1.05
UPF1-207ENST00000599848 EPHX2P34913 555 aa21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms