RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 LPPQ93052 612 aa19.9■□□□□ 0.78
LIG1-216ENST00000598938 CCDC47Q96A33 483 aaKnown RBP19.9■□□□□ 0.78
LIG1-216ENST00000598938 ZBTB45Q96K62 511 aaPredicted RBP19.9■□□□□ 0.78
LIG1-216ENST00000598938 YME1L1Q96TA2 773 aa19.9■□□□□ 0.78
LIG1-216ENST00000598938 NXF3Q9H4D5 531 aaKnown RBP19.9■□□□□ 0.78
LIG1-216ENST00000598938 UBE4BO95155 1302 aa19.9■□□□□ 0.78
LIG1-216ENST00000598938 MEIS3P2A8K0S8 358 aa19.89■□□□□ 0.77
LIG1-216ENST00000598938 PRR33A8MZF0 331 aa19.89■□□□□ 0.77
LIG1-216ENST00000598938 PRPF6O94906 941 aaKnown RBP19.89■□□□□ 0.77
LIG1-216ENST00000598938 SMC2O95347 1197 aa19.89■□□□□ 0.77
LIG1-216ENST00000598938 MCF2P10911 925 aa19.89■□□□□ 0.77
LIG1-216ENST00000598938 HOXD13P35453 343 aa19.89■□□□□ 0.77
LIG1-216ENST00000598938 GATMP50440 423 aa19.89■□□□□ 0.77
LIG1-216ENST00000598938 BMT2Q1RMZ1 405 aa19.89■□□□□ 0.77
LIG1-216ENST00000598938 CLLU1OSQ5K130 101 aa19.89■□□□□ 0.77
LIG1-216ENST00000598938 AGMOQ6ZNB7 445 aa19.89■□□□□ 0.77
LIG1-216ENST00000598938 SPRED2Q7Z698 418 aa19.89■□□□□ 0.77
LIG1-216ENST00000598938 KIAA0895Q8NCT3 520 aa19.89■□□□□ 0.77
LIG1-216ENST00000598938 SCFD1Q8WVM8 642 aa19.89■□□□□ 0.77
LIG1-216ENST00000598938 GSDMAQ96QA5 445 aa19.89■□□□□ 0.77
LIG1-216ENST00000598938 HAPLN2Q9GZV7 340 aa19.89■□□□□ 0.77
LIG1-216ENST00000598938 RNF39Q9H2S5 420 aa19.89■□□□□ 0.77
LIG1-216ENST00000598938 IKZF4Q9H2S9 585 aa19.89■□□□□ 0.77
LIG1-216ENST00000598938 TMEM206Q9H813 350 aa19.89■□□□□ 0.77
LIG1-216ENST00000598938 EXOC7Q9UPT5 735 aa19.89■□□□□ 0.77
LIG1-216ENST00000598938 HES2Q9Y543 173 aa19.89■□□□□ 0.77
LIG1-216ENST00000598938 PCDHA5Q9Y5H7 936 aa19.89■□□□□ 0.77
LIG1-216ENST00000598938 ZMYM2Q9UBW7 1377 aa19.88■□□□□ 0.77
LIG1-216ENST00000598938 LINC01553A4QN01 128 aa19.88■□□□□ 0.77
LIG1-216ENST00000598938 ANKRD63C9JTQ0 380 aa19.88■□□□□ 0.77
LIG1-216ENST00000598938 ITGA4P13612 1032 aa19.88■□□□□ 0.77
LIG1-216ENST00000598938 MCM4P33991 863 aa19.88■□□□□ 0.77
LIG1-216ENST00000598938 NOLC1Q14978 699 aaKnown RBP eCLIP19.88■□□□□ 0.77
LIG1-216ENST00000598938 CMTR2Q8IYT2 770 aaKnown RBP19.88■□□□□ 0.77
LIG1-216ENST00000598938 HACE1Q8IYU2 909 aa19.88■□□□□ 0.77
LIG1-216ENST00000598938 GPT2Q8TD30 523 aa19.88■□□□□ 0.77
LIG1-216ENST00000598938 RSPH1Q8WYR4 309 aa19.88■□□□□ 0.77
LIG1-216ENST00000598938 ERCC4Q92889 916 aaPredicted RBP19.88■□□□□ 0.77
LIG1-216ENST00000598938 SMARCE1Q969G3 411 aa19.88■□□□□ 0.77
LIG1-216ENST00000598938 CASD1Q96PB1 797 aa19.88■□□□□ 0.77
LIG1-216ENST00000598938 TCHPQ9BT92 498 aa19.88■□□□□ 0.77
LIG1-216ENST00000598938 TMEM117Q9H0C3 514 aa19.88■□□□□ 0.77
LIG1-216ENST00000598938 UBN1Q9NPG3 1134 aa19.88■□□□□ 0.77
LIG1-216ENST00000598938 RMND1Q9NWS8 449 aa19.88■□□□□ 0.77
LIG1-216ENST00000598938 ANKFY1Q9P2R3 1169 aa19.88■□□□□ 0.77
LIG1-216ENST00000598938 STYXL1Q9Y6J8 313 aa19.88■□□□□ 0.77
LIG1-216ENST00000598938 TISP43B9A030 160 aa19.87■□□□□ 0.77
LIG1-216ENST00000598938 CLDN3O15551 220 aa19.87■□□□□ 0.77
LIG1-216ENST00000598938 GRM5P41594 1212 aa19.87■□□□□ 0.77
LIG1-216ENST00000598938 PUS10Q3MIT2 529 aaKnown RBP19.87■□□□□ 0.77
LIG1-216ENST00000598938 ZBTB33Q86T24 672 aa19.87■□□□□ 0.77
LIG1-216ENST00000598938 HELQQ8TDG4 1101 aa19.87■□□□□ 0.77
LIG1-216ENST00000598938 CLSTN2Q9H4D0 955 aa19.87■□□□□ 0.77
LIG1-216ENST00000598938 RSAD1Q9HA92 442 aa19.87■□□□□ 0.77
LIG1-216ENST00000598938 A0A0B4J269 797 aa19.86■□□□□ 0.77
LIG1-216ENST00000598938 TBKBP1A7MCY6 615 aa19.86■□□□□ 0.77
LIG1-216ENST00000598938 INPPL1O15357 1258 aa19.86■□□□□ 0.77
LIG1-216ENST00000598938 OFD1O75665 1012 aa19.86■□□□□ 0.77
LIG1-216ENST00000598938 SLFN12LQ6IEE8 588 aa19.86■□□□□ 0.77
LIG1-216ENST00000598938 GLB1LQ6UWU2 654 aa19.86■□□□□ 0.77
LIG1-216ENST00000598938 ABI1Q8IZP0 508 aa19.86■□□□□ 0.77
LIG1-216ENST00000598938 SYCP3Q8IZU3 236 aa19.86■□□□□ 0.77
LIG1-216ENST00000598938 GJD3Q8N144 294 aa19.86■□□□□ 0.77
LIG1-216ENST00000598938 CEP120Q8N960 986 aa19.86■□□□□ 0.77
LIG1-216ENST00000598938 APOL6Q9BWW8 343 aa19.86■□□□□ 0.77
LIG1-216ENST00000598938 CD320Q9NPF0 282 aa19.86■□□□□ 0.77
LIG1-216ENST00000598938 SNTG2Q9NY99 539 aa19.86■□□□□ 0.77
LIG1-216ENST00000598938 GIT1Q9Y2X7 761 aa19.86■□□□□ 0.77
LIG1-216ENST00000598938 RALGAPA2Q2PPJ7 1873 aa19.86■□□□□ 0.77
LIG1-216ENST00000598938 FNDC1Q4ZHG4 1894 aaPredicted RBP19.86■□□□□ 0.77
LIG1-216ENST00000598938 FAM189A1O60320 539 aa19.85■□□□□ 0.77
LIG1-216ENST00000598938 HARSP12081 509 aaKnown RBP19.85■□□□□ 0.77
LIG1-216ENST00000598938 ALADP13716 330 aa19.85■□□□□ 0.77
LIG1-216ENST00000598938 AKAP5P24588 427 aa19.85■□□□□ 0.77
LIG1-216ENST00000598938 ADSSP30520 456 aa19.85■□□□□ 0.77
LIG1-216ENST00000598938 MATR3P43243 847 aaKnown RBP eCLIP19.85■□□□□ 0.77
LIG1-216ENST00000598938 BTG3Q14201 252 aaPredicted RBP19.85■□□□□ 0.77
LIG1-216ENST00000598938 CAMK4Q16566 473 aa19.85■□□□□ 0.77
LIG1-216ENST00000598938 PAN2Q504Q3 1202 aaKnown RBP19.85■□□□□ 0.77
LIG1-216ENST00000598938 SAMD11Q96NU1 681 aa19.85■□□□□ 0.77
LIG1-216ENST00000598938 GBP3Q9H0R5 595 aa19.85■□□□□ 0.77
LIG1-216ENST00000598938 GDAQ9Y2T3 454 aa19.85■□□□□ 0.77
LIG1-216ENST00000598938 NLRC5Q86WI3 1866 aa19.85■□□□□ 0.77
LIG1-216ENST00000598938 FAM86C2PA6NEL3 165 aa19.84■□□□□ 0.77
LIG1-216ENST00000598938 ARL5CA6NH57 179 aa19.84■□□□□ 0.77
LIG1-216ENST00000598938 OGTO15294 1046 aa19.84■□□□□ 0.77
LIG1-216ENST00000598938 TGFB1I1O43294 461 aa19.84■□□□□ 0.77
LIG1-216ENST00000598938 RECQL4O94761 1208 aa19.84■□□□□ 0.77
LIG1-216ENST00000598938 MBD3O95983 291 aa19.84■□□□□ 0.77
LIG1-216ENST00000598938 LINC00271P0C7V0 271 aa19.84■□□□□ 0.77
LIG1-216ENST00000598938 GARTP22102 1010 aa19.84■□□□□ 0.77
LIG1-216ENST00000598938 KNOP1Q1ED39 458 aaKnown RBP19.84■□□□□ 0.77
LIG1-216ENST00000598938 NOMO2Q5JPE7 1267 aa19.84■□□□□ 0.77
LIG1-216ENST00000598938 NELFCDQ8IXH7 590 aa19.84■□□□□ 0.77
LIG1-216ENST00000598938 TMEM192Q8IY95 271 aa19.84■□□□□ 0.77
LIG1-216ENST00000598938 THNSL1Q8IYQ7 743 aa19.84■□□□□ 0.77
LIG1-216ENST00000598938 FIBCD1Q8N539 461 aa19.84■□□□□ 0.77
LIG1-216ENST00000598938 FBXO22Q8NEZ5 403 aa19.84■□□□□ 0.77
LIG1-216ENST00000598938 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.84■□□□□ 0.77
LIG1-216ENST00000598938 MSTO1Q9BUK6 570 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms