RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	PRKCB	P05771	671 aa		11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	OR52Z1	P0C646	297 aa		11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	NPR3	P17342	541 aa		11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	CLCN5	P51795	746 aa		11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	NUBP1	P53384	320 aa		11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	PRPF4B	Q13523	1007 aa	Known RBP	11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	HSP90AA2P	Q14568	343 aa	Predicted RBP	11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	NBR1	Q14596	966 aa		11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	FAM187B	Q17R55	369 aa		11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	TMEM132A	Q24JP5	1023 aa		11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	RTP2	Q5QGT7	225 aa		11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	EEF1DP3	Q658K8	133 aa		11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	ELMSAN1	Q6PJG2	1045 aa		11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	PADI6	Q6TGC4	694 aa		11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	NOSTRIN	Q8IVI9	506 aa		11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	SIX5	Q8N196	739 aa		11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	ST13P5	Q8NFI4	369 aa	Predicted RBP	11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	C8orf76	Q96K31	380 aa		11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	PRIMPOL	Q96LW4	560 aa		11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	NACC1	Q96RE7	527 aa		11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	POLR3C	Q9BUI4	534 aa	Predicted RBP	11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	KIFC3	Q9BVG8	833 aa		11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	IRF2BPL	Q9H1B7	796 aa		11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	DPP7	Q9UHL4	492 aa		11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	FBXL21	Q9UKT6	434 aa		11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	LIMCH1	Q9UPQ0	1083 aa		11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	DMD	P11532	3685 aa		11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	ZMYM2	Q9UBW7	1377 aa		11.64	□□□□□ -0.55
LSM4-205	ENST00000597776	SF3B1	O75533	1304 aa	Known RBP eCLIP	11.63	□□□□□ -0.55
LSM4-205	ENST00000597776	N4BP3	O15049	544 aa		11.63	□□□□□ -0.55
LSM4-205	ENST00000597776	ST18	O60284	1047 aa		11.63	□□□□□ -0.55
LSM4-205	ENST00000597776	CFH	P08603	1231 aa		11.63	□□□□□ -0.55
LSM4-205	ENST00000597776	CYP11B2	P19099	503 aa		11.63	□□□□□ -0.55
LSM4-205	ENST00000597776	RPA1	P27694	616 aa		11.63	□□□□□ -0.55
LSM4-205	ENST00000597776	TUSC3	Q13454	348 aa		11.63	□□□□□ -0.55
LSM4-205	ENST00000597776	ECM1	Q16610	540 aa		11.63	□□□□□ -0.55
LSM4-205	ENST00000597776	MAPK6	Q16659	721 aa		11.63	□□□□□ -0.55
LSM4-205	ENST00000597776	TTC38	Q5R3I4	469 aa		11.63	□□□□□ -0.55
LSM4-205	ENST00000597776	LILRA6	Q6PI73	481 aa		11.63	□□□□□ -0.55
LSM4-205	ENST00000597776	CYP26C1	Q6V0L0	522 aa		11.63	□□□□□ -0.55
LSM4-205	ENST00000597776	GET4	Q7L5D6	327 aa	Predicted RBP	11.63	□□□□□ -0.55
LSM4-205	ENST00000597776	CEP57	Q86XR8	500 aa		11.63	□□□□□ -0.55
LSM4-205	ENST00000597776	ERMN	Q8TAM6	284 aa		11.63	□□□□□ -0.55
LSM4-205	ENST00000597776	DEPTOR	Q8TB45	409 aa		11.63	□□□□□ -0.55
LSM4-205	ENST00000597776	STAM	Q92783	540 aa		11.63	□□□□□ -0.55
LSM4-205	ENST00000597776	RHOBTB2	Q9BYZ6	727 aa		11.63	□□□□□ -0.55
LSM4-205	ENST00000597776	CCDC113	Q9H0I3	377 aa		11.63	□□□□□ -0.55
LSM4-205	ENST00000597776	NT5C3A	Q9H0P0	336 aa		11.63	□□□□□ -0.55
LSM4-205	ENST00000597776	C2orf40	Q9H1Z8	148 aa		11.63	□□□□□ -0.55
LSM4-205	ENST00000597776	PLEKHA4	Q9H4M7	779 aa		11.63	□□□□□ -0.55
LSM4-205	ENST00000597776	PIDD1	Q9HB75	910 aa		11.63	□□□□□ -0.55
LSM4-205	ENST00000597776	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	11.63	□□□□□ -0.55
LSM4-205	ENST00000597776	FNIP2	Q9P278	1114 aa		11.63	□□□□□ -0.55
LSM4-205	ENST00000597776	IGSF9	Q9P2J2	1179 aa		11.63	□□□□□ -0.55
LSM4-205	ENST00000597776	GDA	Q9Y2T3	454 aa		11.63	□□□□□ -0.55
LSM4-205	ENST00000597776	ADAM12	O43184	909 aa		11.62	□□□□□ -0.55
LSM4-205	ENST00000597776	TH	P07101	528 aa		11.62	□□□□□ -0.55
LSM4-205	ENST00000597776	IGFBP6	P24592	240 aa	Predicted RBP	11.62	□□□□□ -0.55
LSM4-205	ENST00000597776	CCT6A	P40227	531 aa	Known RBP	11.62	□□□□□ -0.55
LSM4-205	ENST00000597776	NAMPT	P43490	491 aa		11.62	□□□□□ -0.55
LSM4-205	ENST00000597776	NAB2	Q15742	525 aa		11.62	□□□□□ -0.55
LSM4-205	ENST00000597776	FAM171A1	Q5VUB5	890 aa		11.62	□□□□□ -0.55
LSM4-205	ENST00000597776	ASCL5	Q7RTU5	278 aa		11.62	□□□□□ -0.55
LSM4-205	ENST00000597776	GPR65	Q8IYL9	337 aa		11.62	□□□□□ -0.55
LSM4-205	ENST00000597776	HDAC7	Q8WUI4	952 aa		11.62	□□□□□ -0.55
LSM4-205	ENST00000597776	PRKD2	Q9BZL6	878 aa		11.62	□□□□□ -0.55
LSM4-205	ENST00000597776	FOXP1	Q9H334	677 aa	Predicted RBP	11.62	□□□□□ -0.55
LSM4-205	ENST00000597776	ZDHHC7	Q9NXF8	308 aa		11.62	□□□□□ -0.55
LSM4-205	ENST00000597776	EPS15L1	Q9UBC2	864 aa		11.62	□□□□□ -0.55
LSM4-205	ENST00000597776	KRBA1	A5PL33	1030 aa		11.61	□□□□□ -0.55
LSM4-205	ENST00000597776	ACKR2	O00590	384 aa		11.61	□□□□□ -0.55
LSM4-205	ENST00000597776	ZMYND10	O75800	440 aa		11.61	□□□□□ -0.55
LSM4-205	ENST00000597776	PAPLN	O95428	1278 aa		11.61	□□□□□ -0.55
LSM4-205	ENST00000597776	AOC1	P19801	751 aa		11.61	□□□□□ -0.55
LSM4-205	ENST00000597776	RBM25	P49756	843 aa	Known RBP	11.61	□□□□□ -0.55
LSM4-205	ENST00000597776	NTHL1	P78549	312 aa		11.61	□□□□□ -0.55
LSM4-205	ENST00000597776	CREM	Q03060	361 aa		11.61	□□□□□ -0.55
LSM4-205	ENST00000597776	ORC2	Q13416	577 aa	Predicted RBP	11.61	□□□□□ -0.55
LSM4-205	ENST00000597776	GNL2	Q13823	731 aa	Known RBP	11.61	□□□□□ -0.55
LSM4-205	ENST00000597776	PSMD5	Q16401	504 aa		11.61	□□□□□ -0.55
LSM4-205	ENST00000597776	GLRA4	Q5JXX5	417 aa		11.61	□□□□□ -0.55
LSM4-205	ENST00000597776	NT5DC1	Q5TFE4	455 aa		11.61	□□□□□ -0.55
LSM4-205	ENST00000597776	FRMD5	Q7Z6J6	570 aa		11.61	□□□□□ -0.55
LSM4-205	ENST00000597776	SLC44A3	Q8N4M1	653 aa		11.61	□□□□□ -0.55
LSM4-205	ENST00000597776	C4orf32	Q8N8J7	132 aa		11.61	□□□□□ -0.55
LSM4-205	ENST00000597776	FBXO18	Q8NFZ0	1043 aa		11.61	□□□□□ -0.55
LSM4-205	ENST00000597776	LNX1	Q8TBB1	728 aa	Predicted RBP	11.61	□□□□□ -0.55
LSM4-205	ENST00000597776	PIK3R5	Q8WYR1	880 aa		11.61	□□□□□ -0.55
LSM4-205	ENST00000597776	CLSTN3	Q9BQT9	956 aa		11.61	□□□□□ -0.55
LSM4-205	ENST00000597776	ADPGK	Q9BRR6	497 aa		11.61	□□□□□ -0.55
LSM4-205	ENST00000597776	LLPH	Q9BRT6	129 aa	Known RBP	11.61	□□□□□ -0.55
LSM4-205	ENST00000597776	TTPAL	Q9BTX7	342 aa		11.61	□□□□□ -0.55
LSM4-205	ENST00000597776	BHMT2	Q9H2M3	363 aa		11.61	□□□□□ -0.55
LSM4-205	ENST00000597776	FBXW11	Q9UKB1	542 aa		11.61	□□□□□ -0.55
LSM4-205	ENST00000597776	CA14	Q9ULX7	337 aa		11.61	□□□□□ -0.55
LSM4-205	ENST00000597776	DOCK8	Q8NF50	2099 aa		11.6	□□□□□ -0.55
LSM4-205	ENST00000597776	PROB1	E7EW31	1015 aa		11.6	□□□□□ -0.55
LSM4-205	ENST00000597776	STK25	O00506	426 aa		11.6	□□□□□ -0.55
LSM4-205	ENST00000597776	C1R	P00736	705 aa		11.6	□□□□□ -0.55
LSM4-205	ENST00000597776	LAMP2	P13473	410 aa		11.6	□□□□□ -0.55

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