RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.22□□□□□ -0.45
VRK3-210ENST00000596121 FAM237AA0A1B0GTK4 181 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 HIDE1A8MVS5 230 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 LINC01565O15544 149 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 ACTN4O43707 911 aaKnown RBP12.22□□□□□ -0.45
VRK3-210ENST00000596121 FAM189A1O60320 539 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 TOM1L1O75674 476 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 EFEMP2O95967 443 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 PIGRP01833 764 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 MYBP10242 640 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 MCF2P10911 925 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 PFKFB1P16118 471 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 CMA1P23946 247 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 LTBRP36941 435 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 GRM5P41594 1212 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 NUCB2P80303 420 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 RBM10P98175 930 aaKnown RBP12.22□□□□□ -0.45
VRK3-210ENST00000596121 UBE3AQ05086 875 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 MCL1Q07820 350 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 STRN3Q13033 797 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 SKIV2LQ15477 1246 aaKnown RBP12.22□□□□□ -0.45
VRK3-210ENST00000596121 CSPP1Q1MSJ5 1256 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 TPRNQ4KMQ1 711 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 TIGD5Q53EQ6 642 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 XKR4Q5GH76 650 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 GLRA4Q5JXX5 417 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 ZPBP2Q6X784 338 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 TAS1R1Q7RTX1 841 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 FAM178BQ8IXR5 827 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 RSPH1Q8WYR4 309 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 ZMAT2Q96NC0 199 aaKnown RBP12.22□□□□□ -0.45
VRK3-210ENST00000596121 ADPGKQ9BRR6 497 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 TMEM175Q9BSA9 504 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 TCHPQ9BT92 498 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 BLZF1Q9H2G9 400 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 TNMDQ9H2S6 317 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 GOLPH3LQ9H4A5 285 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 PANK4Q9NVE7 773 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 ANKFY1Q9P2R3 1169 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 LZTS1Q9Y250 596 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 FAN1Q9Y2M0 1017 aa12.22□□□□□ -0.45
VRK3-210ENST00000596121 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.21□□□□□ -0.45
VRK3-210ENST00000596121 PER2O15055 1255 aa12.21□□□□□ -0.45
VRK3-210ENST00000596121 ALDH2P05091 517 aa12.21□□□□□ -0.45
VRK3-210ENST00000596121 HARSP12081 509 aaKnown RBP12.21□□□□□ -0.45
VRK3-210ENST00000596121 IDEP14735 1019 aa12.21□□□□□ -0.45
VRK3-210ENST00000596121 GAP43P17677 238 aa12.21□□□□□ -0.45
VRK3-210ENST00000596121 HOXD13P35453 343 aa12.21□□□□□ -0.45
VRK3-210ENST00000596121 PPM1AP35813 382 aa12.21□□□□□ -0.45
VRK3-210ENST00000596121 OR1G1P47890 313 aa12.21□□□□□ -0.45
VRK3-210ENST00000596121 NDUFA8P51970 172 aa12.21□□□□□ -0.45
VRK3-210ENST00000596121 DLX2Q07687 328 aaPredicted RBP12.21□□□□□ -0.45
VRK3-210ENST00000596121 CUL4BQ13620 913 aa12.21□□□□□ -0.45
VRK3-210ENST00000596121 SLC10A6Q3KNW5 377 aa12.21□□□□□ -0.45
VRK3-210ENST00000596121 HERC4Q5GLZ8 1057 aaPredicted RBP12.21□□□□□ -0.45
VRK3-210ENST00000596121 CNNM4Q6P4Q7 775 aa12.21□□□□□ -0.45
VRK3-210ENST00000596121 CD300LGQ6UXG3 332 aa12.21□□□□□ -0.45
VRK3-210ENST00000596121 RBM23Q86U06 439 aaKnown RBP12.21□□□□□ -0.45
VRK3-210ENST00000596121 MAP4K3Q8IVH8 894 aa12.21□□□□□ -0.45
VRK3-210ENST00000596121 HACE1Q8IYU2 909 aa12.21□□□□□ -0.45
VRK3-210ENST00000596121 ZSWIM2Q8NEG5 633 aa12.21□□□□□ -0.45
VRK3-210ENST00000596121 VN1R2Q8NFZ6 395 aa12.21□□□□□ -0.45
VRK3-210ENST00000596121 AUTS2Q8WXX7 1259 aa12.21□□□□□ -0.45
VRK3-210ENST00000596121 PPP1R10Q96QC0 940 aaKnown RBP12.21□□□□□ -0.45
VRK3-210ENST00000596121 C7orf25Q9BPX7 421 aa12.21□□□□□ -0.45
VRK3-210ENST00000596121 TCF25Q9BQ70 676 aa12.21□□□□□ -0.45
VRK3-210ENST00000596121 CUEDC2Q9H467 287 aa12.21□□□□□ -0.45
VRK3-210ENST00000596121 IGFLR1Q9H665 355 aa12.21□□□□□ -0.45
VRK3-210ENST00000596121 TLR9Q9NR96 1032 aa12.21□□□□□ -0.45
VRK3-210ENST00000596121 FAM13BQ9NYF5 915 aa12.21□□□□□ -0.45
VRK3-210ENST00000596121 PRG3Q9Y2Y8 225 aaPredicted RBP12.21□□□□□ -0.45
VRK3-210ENST00000596121 ZMYM2Q9UBW7 1377 aa12.2□□□□□ -0.46
VRK3-210ENST00000596121 SMIM28A0A1B0GU29 152 aa12.2□□□□□ -0.46
VRK3-210ENST00000596121 CASTOR2A6NHX0 329 aa12.2□□□□□ -0.46
VRK3-210ENST00000596121 H0YCG3 227 aa12.2□□□□□ -0.46
VRK3-210ENST00000596121 CLDN3O15551 220 aa12.2□□□□□ -0.46
VRK3-210ENST00000596121 ADSSP30520 456 aa12.2□□□□□ -0.46
VRK3-210ENST00000596121 TNFSF9P41273 254 aa12.2□□□□□ -0.46
VRK3-210ENST00000596121 AFMP43652 599 aa12.2□□□□□ -0.46
VRK3-210ENST00000596121 NRIP1P48552 1158 aa12.2□□□□□ -0.46
VRK3-210ENST00000596121 KCNQ1P51787 676 aa12.2□□□□□ -0.46
VRK3-210ENST00000596121 SOX4Q06945 474 aaPredicted RBP12.2□□□□□ -0.46
VRK3-210ENST00000596121 EHHADHQ08426 723 aa12.2□□□□□ -0.46
VRK3-210ENST00000596121 GRIK3Q13003 919 aa12.2□□□□□ -0.46
VRK3-210ENST00000596121 COASYQ13057 564 aa12.2□□□□□ -0.46
VRK3-210ENST00000596121 NOLC1Q14978 699 aaKnown RBP eCLIP12.2□□□□□ -0.46
VRK3-210ENST00000596121 CTC1Q2NKJ3 1217 aa12.2□□□□□ -0.46
VRK3-210ENST00000596121 PLPP4Q5VZY2 271 aa12.2□□□□□ -0.46
VRK3-210ENST00000596121 DDX53Q86TM3 631 aaKnown RBP12.2□□□□□ -0.46
VRK3-210ENST00000596121 RNF168Q8IYW5 571 aaPredicted RBP12.2□□□□□ -0.46
VRK3-210ENST00000596121 VPS52Q8N1B4 723 aa12.2□□□□□ -0.46
VRK3-210ENST00000596121 MICAL1Q8TDZ2 1067 aa12.2□□□□□ -0.46
VRK3-210ENST00000596121 HLA-CQ95604 372 aa12.2□□□□□ -0.46
VRK3-210ENST00000596121 PAGE5Q96GU1 130 aa12.2□□□□□ -0.46
VRK3-210ENST00000596121 SNX27Q96L92 541 aa12.2□□□□□ -0.46
VRK3-210ENST00000596121 FAM193BQ96PV7 902 aaPredicted RBP12.2□□□□□ -0.46
VRK3-210ENST00000596121 SCAND2PQ9GZW5 306 aaPredicted RBP12.2□□□□□ -0.46
VRK3-210ENST00000596121 ZBP1Q9H171 429 aa12.2□□□□□ -0.46
VRK3-210ENST00000596121 UBE2ZQ9H832 354 aaPredicted RBP12.2□□□□□ -0.46
VRK3-210ENST00000596121 MRPL44Q9H9J2 332 aaKnown RBP12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms