RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 SSX2IPQ9Y2D8 614 aa13.81□□□□□ -0.2
UPF1-203ENST00000594504 GALR2O43603 387 aaPredicted RBP13.8□□□□□ -0.2
UPF1-203ENST00000594504 PI15O43692 258 aa13.8□□□□□ -0.2
UPF1-203ENST00000594504 GLUD1P00367 558 aa13.8□□□□□ -0.2
UPF1-203ENST00000594504 EDN1P05305 212 aa13.8□□□□□ -0.2
UPF1-203ENST00000594504 ADH1AP07327 375 aa13.8□□□□□ -0.2
UPF1-203ENST00000594504 NPR3P17342 541 aa13.8□□□□□ -0.2
UPF1-203ENST00000594504 LIG1P18858 919 aa13.8□□□□□ -0.2
UPF1-203ENST00000594504 GBP2P32456 591 aaPredicted RBP13.8□□□□□ -0.2
UPF1-203ENST00000594504 PTGDRQ13258 359 aa13.8□□□□□ -0.2
UPF1-203ENST00000594504 FUT10Q6P4F1 479 aa13.8□□□□□ -0.2
UPF1-203ENST00000594504 POTEGQ6S5H5 508 aa13.8□□□□□ -0.2
UPF1-203ENST00000594504 PRSS55Q6UWB4 352 aaPredicted RBP13.8□□□□□ -0.2
UPF1-203ENST00000594504 C15orf39Q6ZRI6 1047 aa13.8□□□□□ -0.2
UPF1-203ENST00000594504 OTOP3Q7RTS5 596 aa13.8□□□□□ -0.2
UPF1-203ENST00000594504 FLCNQ8NFG4 579 aa13.8□□□□□ -0.2
UPF1-203ENST00000594504 HASPINQ8TF76 798 aa13.8□□□□□ -0.2
UPF1-203ENST00000594504 MFSD1Q9H3U5 465 aa13.8□□□□□ -0.2
UPF1-203ENST00000594504 SNTG2Q9NY99 539 aa13.8□□□□□ -0.2
UPF1-203ENST00000594504 STK39Q9UEW8 545 aa13.8□□□□□ -0.2
UPF1-203ENST00000594504 MTMR6Q9Y217 621 aa13.8□□□□□ -0.2
UPF1-203ENST00000594504 MTCL1Q9Y4B5 1905 aaKnown RBP13.8□□□□□ -0.2
UPF1-203ENST00000594504 TGM5O43548 720 aa13.79□□□□□ -0.2
UPF1-203ENST00000594504 NR1I2O75469 434 aa13.79□□□□□ -0.2
UPF1-203ENST00000594504 TADA2AO75478 443 aa13.79□□□□□ -0.2
UPF1-203ENST00000594504 PRPHP41219 470 aa13.79□□□□□ -0.2
UPF1-203ENST00000594504 FXR2P51116 673 aaKnown RBP eCLIP13.79□□□□□ -0.27e-8■■■■□ 20.8
UPF1-203ENST00000594504 RESTQ13127 1097 aa13.79□□□□□ -0.2
UPF1-203ENST00000594504 TDGQ13569 410 aa13.79□□□□□ -0.2
UPF1-203ENST00000594504 ECM1Q16610 540 aa13.79□□□□□ -0.2
UPF1-203ENST00000594504 USP41Q3LFD5 358 aa13.79□□□□□ -0.2
UPF1-203ENST00000594504 ASTLQ6HA08 431 aaPredicted RBP13.79□□□□□ -0.2
UPF1-203ENST00000594504 RIN2Q8WYP3 895 aaPredicted RBP13.79□□□□□ -0.2
UPF1-203ENST00000594504 SMG7Q92540 1137 aaKnown RBP13.79□□□□□ -0.2
UPF1-203ENST00000594504 ZNF707Q96C28 371 aaPredicted RBP13.79□□□□□ -0.2
UPF1-203ENST00000594504 MYADMQ96S97 322 aa13.79□□□□□ -0.2
UPF1-203ENST00000594504 NT5C3AQ9H0P0 336 aa13.79□□□□□ -0.2
UPF1-203ENST00000594504 FZD8Q9H461 694 aa13.79□□□□□ -0.2
UPF1-203ENST00000594504 WDR6Q9NNW5 1121 aaKnown RBP13.79□□□□□ -0.2
UPF1-203ENST00000594504 TUFT1Q9NNX1 390 aa13.79□□□□□ -0.2
UPF1-203ENST00000594504 ADAM28Q9UKQ2 775 aa13.79□□□□□ -0.2
UPF1-203ENST00000594504 CASTOR2A6NHX0 329 aa13.78□□□□□ -0.2
UPF1-203ENST00000594504 GFRA3O60609 400 aa13.78□□□□□ -0.2
UPF1-203ENST00000594504 BMP15O95972 392 aa13.78□□□□□ -0.2
UPF1-203ENST00000594504 IGFBP6P24592 240 aaPredicted RBP13.78□□□□□ -0.2
UPF1-203ENST00000594504 ATP2C1P98194 919 aaPredicted RBP13.78□□□□□ -0.2
UPF1-203ENST00000594504 GRIK3Q13003 919 aa13.78□□□□□ -0.2
UPF1-203ENST00000594504 BECN1Q14457 450 aa13.78□□□□□ -0.2
UPF1-203ENST00000594504 EEF1DP3Q658K8 133 aa13.78□□□□□ -0.2
UPF1-203ENST00000594504 CWF19L1Q69YN2 538 aaKnown RBP13.78□□□□□ -0.2
UPF1-203ENST00000594504 LILRA6Q6PI73 481 aa13.78□□□□□ -0.2
UPF1-203ENST00000594504 PADI6Q6TGC4 694 aa13.78□□□□□ -0.2
UPF1-203ENST00000594504 PPP4R3CPQ6ZMV5 832 aa13.78□□□□□ -0.2
UPF1-203ENST00000594504 CEP57Q86XR8 500 aa13.78□□□□□ -0.2
UPF1-203ENST00000594504 HACE1Q8IYU2 909 aa13.78□□□□□ -0.2
UPF1-203ENST00000594504 CMASQ8NFW8 434 aaPredicted RBP13.78□□□□□ -0.2
UPF1-203ENST00000594504 ERMNQ8TAM6 284 aa13.78□□□□□ -0.2
UPF1-203ENST00000594504 NACC1Q96RE7 527 aa13.78□□□□□ -0.2
UPF1-203ENST00000594504 POLR3CQ9BUI4 534 aaPredicted RBP13.78□□□□□ -0.2
UPF1-203ENST00000594504 RAB34Q9BZG1 259 aa13.78□□□□□ -0.2
UPF1-203ENST00000594504 ZSCAN16Q9H4T2 348 aaPredicted RBP13.78□□□□□ -0.2
UPF1-203ENST00000594504 PDZD7Q9H5P4 517 aa13.78□□□□□ -0.2
UPF1-203ENST00000594504 PIDD1Q9HB75 910 aa13.78□□□□□ -0.2
UPF1-203ENST00000594504 PRMT7Q9NVM4 692 aaPredicted RBP13.78□□□□□ -0.2
UPF1-203ENST00000594504 PTGESO14684 152 aa13.77□□□□□ -0.21
UPF1-203ENST00000594504 CLUHO75153 1309 aa13.77□□□□□ -0.21
UPF1-203ENST00000594504 CFHP08603 1231 aa13.77□□□□□ -0.21
UPF1-203ENST00000594504 PDIA5Q14554 519 aa13.77□□□□□ -0.21
UPF1-203ENST00000594504 HSP90AA2PQ14568 343 aaPredicted RBP13.77□□□□□ -0.21
UPF1-203ENST00000594504 FAM187BQ17R55 369 aa13.77□□□□□ -0.21
UPF1-203ENST00000594504 TMEM132AQ24JP5 1023 aa13.77□□□□□ -0.21
UPF1-203ENST00000594504 RTP2Q5QGT7 225 aa13.77□□□□□ -0.21
UPF1-203ENST00000594504 ARL6IP4Q66PJ3 421 aaKnown RBP13.77□□□□□ -0.21
UPF1-203ENST00000594504 CDCA2Q69YH5 1023 aaPredicted RBP13.77□□□□□ -0.21
UPF1-203ENST00000594504 DTHD1Q6ZMT9 781 aa13.77□□□□□ -0.21
UPF1-203ENST00000594504 ZBTB8OSQ8IWT0 167 aa13.77□□□□□ -0.21
UPF1-203ENST00000594504 IGSF22Q8N9C0 903 aa13.77□□□□□ -0.21
UPF1-203ENST00000594504 SPRYD3Q8NCJ5 442 aa13.77□□□□□ -0.21
UPF1-203ENST00000594504 MCPH1Q8NEM0 835 aa13.77□□□□□ -0.21
UPF1-203ENST00000594504 KIFC3Q9BVG8 833 aa13.77□□□□□ -0.21
UPF1-203ENST00000594504 FBXL21Q9UKT6 434 aa13.77□□□□□ -0.21
UPF1-203ENST00000594504 DUSP12Q9UNI6 340 aa13.77□□□□□ -0.21
UPF1-203ENST00000594504 STK24Q9Y6E0 443 aa13.77□□□□□ -0.21
UPF1-203ENST00000594504 DOCK6Q96HP0 2047 aa13.76□□□□□ -0.21
UPF1-203ENST00000594504 ARHGEF35A5YM69 484 aa13.76□□□□□ -0.21
UPF1-203ENST00000594504 KIF4AO95239 1232 aa13.76□□□□□ -0.21
UPF1-203ENST00000594504 PRKCBP05771 671 aa13.76□□□□□ -0.21
UPF1-203ENST00000594504 CYP11B2P19099 503 aa13.76□□□□□ -0.21
UPF1-203ENST00000594504 RPA1P27694 616 aa13.76□□□□□ -0.21
UPF1-203ENST00000594504 CLCN5P51795 746 aa13.76□□□□□ -0.21
UPF1-203ENST00000594504 NUBP1P53384 320 aa13.76□□□□□ -0.21
UPF1-203ENST00000594504 TUSC3Q13454 348 aa13.76□□□□□ -0.21
UPF1-203ENST00000594504 PRPF4BQ13523 1007 aaKnown RBP13.76□□□□□ -0.21
UPF1-203ENST00000594504 FAM171A1Q5VUB5 890 aa13.76□□□□□ -0.21
UPF1-203ENST00000594504 HAUS3Q68CZ6 603 aa13.76□□□□□ -0.21
UPF1-203ENST00000594504 ASCL5Q7RTU5 278 aa13.76□□□□□ -0.21
UPF1-203ENST00000594504 SIX5Q8N196 739 aa13.76□□□□□ -0.21
UPF1-203ENST00000594504 SLC44A3Q8N4M1 653 aa13.76□□□□□ -0.21
UPF1-203ENST00000594504 PRIMPOLQ96LW4 560 aa13.76□□□□□ -0.21
UPF1-203ENST00000594504 CLSTN3Q9BQT9 956 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms